EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000031976 (Gene tree)
Gene ID: 382038
Gene Symbol: Urb2
Alias: -
Full Name: URB2 ribosome biogenesis 2 homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 26998 bases
Position: chr8:124021508-124048505
Accession: 2681124
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000034457	Urb2	PF10441.9	2.5e-23	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000034457	-	5853	XM_006531150	ENSMUSP00000034457	1524 (aa)	XP_006531213	E9Q7L1
ENSMUST00000173168	-	6073	-	ENSMUSP00000133547	1296 (aa)	-	G3UX45

Gene Model

Click here to download ENSMUSG00000031976's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000031976's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000031976	Urb2	100	71.531	ENSG00000135763	URB2	100	79.762	Homo_sapiens
ENSMUSG00000031976	Urb2	90	35.408	ENSAPOG00000000608	urb2	95	35.294	Acanthochromis_polyacanthus
ENSMUSG00000031976	Urb2	99	70.295	ENSAMEG00000009206	URB2	99	70.295	Ailuropoda_melanoleuca
ENSMUSG00000031976	Urb2	99	53.086	ENSAOCG00000019961	urb2	97	53.086	Amphiprion_ocellaris
ENSMUSG00000031976	Urb2	99	53.086	ENSAPEG00000005263	urb2	97	53.086	Amphiprion_percula
ENSMUSG00000031976	Urb2	99	34.618	ENSATEG00000020930	urb2	99	34.463	Anabas_testudineus
ENSMUSG00000031976	Urb2	97	46.927	ENSAPLG00000002998	URB2	100	47.125	Anas_platyrhynchos
ENSMUSG00000031976	Urb2	100	47.188	ENSACAG00000001285	URB2	100	47.188	Anolis_carolinensis
ENSMUSG00000031976	Urb2	100	71.597	ENSANAG00000033963	URB2	100	71.531	Aotus_nancymaae
ENSMUSG00000031976	Urb2	90	34.331	ENSACLG00000009254	urb2	95	34.369	Astatotilapia_calliptera
ENSMUSG00000031976	Urb2	100	35.623	ENSAMXG00000003474	urb2	100	35.449	Astyanax_mexicanus
ENSMUSG00000031976	Urb2	99	64.421	ENSBTAG00000010180	URB2	99	64.421	Bos_taurus
ENSMUSG00000031976	Urb2	95	81.560	ENSCJAG00000010968	URB2	100	71.270	Callithrix_jacchus
ENSMUSG00000031976	Urb2	100	69.790	ENSCAFG00000012118	URB2	100	69.790	Canis_familiaris
ENSMUSG00000031976	Urb2	93	68.233	ENSCAFG00020027217	URB2	99	68.233	Canis_lupus_dingo
ENSMUSG00000031976	Urb2	99	64.617	ENSCHIG00000014513	URB2	99	64.617	Capra_hircus
ENSMUSG00000031976	Urb2	99	70.727	ENSTSYG00000006924	URB2	99	70.727	Carlito_syrichta
ENSMUSG00000031976	Urb2	64	76.852	ENSCPOG00000020777	-	100	74.138	Cavia_porcellus
ENSMUSG00000031976	Urb2	100	71.401	ENSCCAG00000023932	URB2	100	71.335	Cebus_capucinus
ENSMUSG00000031976	Urb2	100	71.728	ENSCATG00000043366	URB2	100	71.728	Cercocebus_atys
ENSMUSG00000031976	Urb2	100	71.681	ENSCLAG00000006268	URB2	100	71.681	Chinchilla_lanigera
ENSMUSG00000031976	Urb2	100	71.662	ENSCSAG00000010599	URB2	100	71.662	Chlorocebus_sabaeus
ENSMUSG00000031976	Urb2	69	71.253	ENSCHOG00000010163	URB2	71	71.253	Choloepus_hoffmanni
ENSMUSG00000031976	Urb2	100	51.350	ENSCPBG00000006191	URB2	100	51.350	Chrysemys_picta_bellii
ENSMUSG00000031976	Urb2	100	71.859	ENSCANG00000023711	URB2	100	71.859	Colobus_angolensis_palliatus
ENSMUSG00000031976	Urb2	100	86.024	ENSCGRG00001009591	Urb2	100	86.024	Cricetulus_griseus_chok1gshd
ENSMUSG00000031976	Urb2	100	86.024	ENSCGRG00000011259	Urb2	100	86.024	Cricetulus_griseus_crigri
ENSMUSG00000031976	Urb2	99	33.514	ENSCSEG00000000299	urb2	99	33.313	Cynoglossus_semilaevis
ENSMUSG00000031976	Urb2	99	34.018	ENSCVAG00000011011	urb2	99	34.065	Cyprinodon_variegatus
ENSMUSG00000031976	Urb2	99	37.307	ENSDARG00000003217	urb2	97	57.143	Danio_rerio
ENSMUSG00000031976	Urb2	97	56.237	ENSDNOG00000043064	URB2	99	56.372	Dasypus_novemcinctus
ENSMUSG00000031976	Urb2	100	72.626	ENSDORG00000014975	Urb2	100	72.626	Dipodomys_ordii
ENSMUSG00000031976	Urb2	95	65.141	ENSETEG00000002869	URB2	95	65.141	Echinops_telfairi
ENSMUSG00000031976	Urb2	99	69.810	ENSEASG00005012060	URB2	99	69.810	Equus_asinus_asinus
ENSMUSG00000031976	Urb2	93	79.433	ENSECAG00000012338	URB2	99	79.433	Equus_caballus
ENSMUSG00000031976	Urb2	92	75.887	ENSEEUG00000002669	URB2	92	75.887	Erinaceus_europaeus
ENSMUSG00000031976	Urb2	99	38.828	ENSELUG00000014647	urb2	99	38.604	Esox_lucius
ENSMUSG00000031976	Urb2	100	68.828	ENSFCAG00000007662	URB2	100	68.828	Felis_catus
ENSMUSG00000031976	Urb2	100	47.399	ENSFALG00000003385	URB2	100	47.399	Ficedula_albicollis
ENSMUSG00000031976	Urb2	100	71.830	ENSFDAG00000021079	URB2	100	71.830	Fukomys_damarensis
ENSMUSG00000031976	Urb2	99	34.023	ENSFHEG00000010357	urb2	99	34.227	Fundulus_heteroclitus
ENSMUSG00000031976	Urb2	90	38.981	ENSGMOG00000012459	urb2	100	34.184	Gadus_morhua
ENSMUSG00000031976	Urb2	100	47.726	ENSGALG00000011101	URB2	100	47.726	Gallus_gallus
ENSMUSG00000031976	Urb2	99	36.697	ENSGACG00000016179	urb2	99	36.825	Gasterosteus_aculeatus
ENSMUSG00000031976	Urb2	100	51.284	ENSGAGG00000021879	URB2	100	51.284	Gopherus_agassizii
ENSMUSG00000031976	Urb2	100	71.335	ENSGGOG00000025643	URB2	100	71.335	Gorilla_gorilla
ENSMUSG00000031976	Urb2	99	51.235	ENSHBUG00000018469	urb2	97	51.235	Haplochromis_burtoni
ENSMUSG00000031976	Urb2	97	72.629	ENSHGLG00000016561	URB2	99	72.629	Heterocephalus_glaber_female
ENSMUSG00000031976	Urb2	100	70.569	ENSHGLG00100001838	URB2	100	70.569	Heterocephalus_glaber_male
ENSMUSG00000031976	Urb2	99	35.664	ENSIPUG00000020315	urb2	99	35.614	Ictalurus_punctatus
ENSMUSG00000031976	Urb2	100	70.877	ENSSTOG00000025323	URB2	100	70.877	Ictidomys_tridecemlineatus
ENSMUSG00000031976	Urb2	100	76.509	ENSJJAG00000011998	Urb2	100	76.444	Jaculus_jaculus
ENSMUSG00000031976	Urb2	99	33.213	ENSKMAG00000020129	urb2	99	33.273	Kryptolebias_marmoratus
ENSMUSG00000031976	Urb2	100	44.622	ENSLACG00000002038	URB2	100	44.764	Latimeria_chalumnae
ENSMUSG00000031976	Urb2	100	39.846	ENSLOCG00000015462	urb2	100	39.782	Lepisosteus_oculatus
ENSMUSG00000031976	Urb2	99	68.631	ENSLAFG00000012484	URB2	100	68.631	Loxodonta_africana
ENSMUSG00000031976	Urb2	100	71.270	ENSMFAG00000039905	URB2	100	71.270	Macaca_fascicularis
ENSMUSG00000031976	Urb2	100	71.401	ENSMMUG00000009509	URB2	100	71.401	Macaca_mulatta
ENSMUSG00000031976	Urb2	100	71.793	ENSMNEG00000038762	URB2	100	71.793	Macaca_nemestrina
ENSMUSG00000031976	Urb2	100	71.662	ENSMLEG00000043252	URB2	100	71.662	Mandrillus_leucophaeus
ENSMUSG00000031976	Urb2	99	33.702	ENSMAMG00000020365	urb2	99	33.645	Mastacembelus_armatus
ENSMUSG00000031976	Urb2	99	34.689	ENSMZEG00005011027	urb2	99	34.726	Maylandia_zebra
ENSMUSG00000031976	Urb2	94	45.280	ENSMGAG00000012073	URB2	100	45.417	Meleagris_gallopavo
ENSMUSG00000031976	Urb2	95	89.362	ENSMAUG00000017980	Urb2	100	89.362	Mesocricetus_auratus
ENSMUSG00000031976	Urb2	99	71.035	ENSMICG00000033302	URB2	99	71.035	Microcebus_murinus
ENSMUSG00000031976	Urb2	100	84.908	ENSMOCG00000020369	Urb2	100	84.908	Microtus_ochrogaster
ENSMUSG00000031976	Urb2	99	35.622	ENSMALG00000006529	urb2	99	35.518	Monopterus_albus
ENSMUSG00000031976	Urb2	100	69.201	ENSMPUG00000012438	URB2	100	69.135	Mustela_putorius_furo
ENSMUSG00000031976	Urb2	100	77.100	ENSNGAG00000016524	Urb2	100	77.100	Nannospalax_galili
ENSMUSG00000031976	Urb2	100	71.746	ENSNLEG00000014450	URB2	100	71.746	Nomascus_leucogenys
ENSMUSG00000031976	Urb2	91	56.303	ENSMEUG00000016434	URB2	94	56.388	Notamacropus_eugenii
ENSMUSG00000031976	Urb2	92	65.105	ENSOPRG00000009906	URB2	92	65.105	Ochotona_princeps
ENSMUSG00000031976	Urb2	100	71.438	ENSODEG00000005593	URB2	100	71.438	Octodon_degus
ENSMUSG00000031976	Urb2	99	37.105	ENSONIG00000017078	urb2	99	37.081	Oreochromis_niloticus
ENSMUSG00000031976	Urb2	100	48.469	ENSOANG00000013732	URB2	100	48.925	Ornithorhynchus_anatinus
ENSMUSG00000031976	Urb2	99	68.807	ENSOCUG00000010700	URB2	99	68.807	Oryctolagus_cuniculus
ENSMUSG00000031976	Urb2	99	34.895	ENSORLG00000010915	urb2	99	34.683	Oryzias_latipes
ENSMUSG00000031976	Urb2	99	34.678	ENSORLG00020003361	urb2	99	34.518	Oryzias_latipes_hni
ENSMUSG00000031976	Urb2	99	34.356	ENSORLG00015001534	urb2	99	34.437	Oryzias_latipes_hsok
ENSMUSG00000031976	Urb2	99	34.388	ENSOMEG00000010076	urb2	99	34.388	Oryzias_melastigma
ENSMUSG00000031976	Urb2	99	69.961	ENSOGAG00000003021	URB2	99	69.961	Otolemur_garnettii
ENSMUSG00000031976	Urb2	99	64.683	ENSOARG00000003102	URB2	99	64.683	Ovis_aries
ENSMUSG00000031976	Urb2	100	72.055	ENSPPAG00000040629	URB2	100	72.055	Pan_paniscus
ENSMUSG00000031976	Urb2	100	68.500	ENSPPRG00000012767	URB2	100	68.500	Panthera_pardus
ENSMUSG00000031976	Urb2	95	75.758	ENSPTIG00000012577	URB2	100	75.758	Panthera_tigris_altaica
ENSMUSG00000031976	Urb2	100	71.793	ENSPTRG00000002092	URB2	100	71.793	Pan_troglodytes
ENSMUSG00000031976	Urb2	100	70.026	ENSPANG00000002245	URB2	100	70.026	Papio_anubis
ENSMUSG00000031976	Urb2	100	38.924	ENSPKIG00000005787	urb2	100	38.822	Paramormyrops_kingsleyae
ENSMUSG00000031976	Urb2	100	50.606	ENSPSIG00000002690	URB2	100	50.606	Pelodiscus_sinensis
ENSMUSG00000031976	Urb2	96	86.566	ENSPEMG00000019551	Urb2	100	86.566	Peromyscus_maniculatus_bairdii
ENSMUSG00000031976	Urb2	100	58.018	ENSPCIG00000030071	URB2	100	58.018	Phascolarctos_cinereus
ENSMUSG00000031976	Urb2	99	34.403	ENSPFOG00000014330	urb2	99	34.758	Poecilia_formosa
ENSMUSG00000031976	Urb2	99	33.982	ENSPLAG00000014654	urb2	99	34.525	Poecilia_latipinna
ENSMUSG00000031976	Urb2	99	33.557	ENSPMEG00000012356	urb2	99	34.015	Poecilia_mexicana
ENSMUSG00000031976	Urb2	99	34.173	ENSPREG00000010268	urb2	99	34.215	Poecilia_reticulata
ENSMUSG00000031976	Urb2	99	71.316	ENSPPYG00000000123	URB2	99	71.316	Pongo_abelii
ENSMUSG00000031976	Urb2	99	71.120	ENSPCOG00000023537	URB2	99	71.120	Propithecus_coquereli
ENSMUSG00000031976	Urb2	100	59.542	ENSPVAG00000002108	URB2	100	59.608	Pteropus_vampyrus
ENSMUSG00000031976	Urb2	90	34.444	ENSPNYG00000016840	urb2	95	34.483	Pundamilia_nyererei
ENSMUSG00000031976	Urb2	100	35.783	ENSPNAG00000013684	urb2	100	35.723	Pygocentrus_nattereri
ENSMUSG00000031976	Urb2	100	90.623	ENSRNOG00000026853	Urb2	97	90.623	Rattus_norvegicus
ENSMUSG00000031976	Urb2	100	71.924	ENSRBIG00000037937	URB2	100	71.924	Rhinopithecus_bieti
ENSMUSG00000031976	Urb2	100	71.728	ENSRROG00000039854	URB2	100	71.728	Rhinopithecus_roxellana
ENSMUSG00000031976	Urb2	100	71.990	ENSSBOG00000023055	URB2	100	71.924	Saimiri_boliviensis_boliviensis
ENSMUSG00000031976	Urb2	100	58.094	ENSSHAG00000014735	URB2	100	57.963	Sarcophilus_harrisii
ENSMUSG00000031976	Urb2	98	38.426	ENSSFOG00015015432	urb2	98	38.758	Scleropages_formosus
ENSMUSG00000031976	Urb2	90	33.935	ENSSMAG00000004984	urb2	95	33.623	Scophthalmus_maximus
ENSMUSG00000031976	Urb2	99	34.553	ENSSDUG00000000902	urb2	99	34.477	Seriola_dumerili
ENSMUSG00000031976	Urb2	100	50.224	ENSSPUG00000018549	URB2	100	50.255	Sphenodon_punctatus
ENSMUSG00000031976	Urb2	99	35.719	ENSSPAG00000013632	urb2	99	35.813	Stegastes_partitus
ENSMUSG00000031976	Urb2	99	66.296	ENSSSCG00000010186	URB2	99	66.296	Sus_scrofa
ENSMUSG00000031976	Urb2	100	47.665	ENSTGUG00000009990	URB2	100	47.665	Taeniopygia_guttata
ENSMUSG00000031976	Urb2	99	34.029	ENSTRUG00000008173	urb2	99	34.129	Takifugu_rubripes
ENSMUSG00000031976	Urb2	95	45.336	ENSTNIG00000017689	urb2	95	45.904	Tetraodon_nigroviridis
ENSMUSG00000031976	Urb2	99	59.088	ENSTTRG00000014864	URB2	99	59.088	Tursiops_truncatus
ENSMUSG00000031976	Urb2	99	70.295	ENSUAMG00000015022	URB2	99	70.295	Ursus_americanus
ENSMUSG00000031976	Urb2	99	70.492	ENSUMAG00000004728	URB2	99	70.492	Ursus_maritimus
ENSMUSG00000031976	Urb2	63	81.429	ENSVPAG00000001750	-	63	81.429	Vicugna_pacos
ENSMUSG00000031976	Urb2	100	69.397	ENSVVUG00000006747	URB2	100	69.397	Vulpes_vulpes
ENSMUSG00000031976	Urb2	100	40.283	ENSXETG00000023331	urb2	100	40.283	Xenopus_tropicalis
ENSMUSG00000031976	Urb2	99	34.542	ENSXMAG00000015059	urb2	99	34.398	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0016235	aggresome	-	ISO	Component
GO:0030496	midbody	-	ISO	Component
GO:0042254	ribosome biogenesis	21873635.	IBA	Process