EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000032044 (Gene tree)
Gene ID: 71989
Gene Symbol: Rpusd4
Alias: 2410001E19Rik
Full Name: RNA pseudouridylate synthase domain containing 4
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 9867 bases
Position: chr9:35267865-35277731
Accession: 1919239
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000034543	PseudoU_synth_2	PF00849.22	3.4e-34	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000144582	-	508	-	ENSMUSP00000120327	35 (aa)	-	F6W6X9
ENSMUST00000146571	-	495	-	-	- (aa)	-	-
ENSMUST00000034543	-	1821	-	ENSMUSP00000034543	377 (aa)	-	Q9CWX4
ENSMUST00000130552	-	801	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000032044's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000032044's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000032044	Rpusd4	70	34.043	ENSMUSG00000051169	Rpusd3	78	34.752

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000032044	Rpusd4	100	78.515	ENSG00000165526	RPUSD4	100	78.515	Homo_sapiens
ENSMUSG00000032044	Rpusd4	87	50.301	ENSAPOG00000011024	rpusd4	83	50.301	Acanthochromis_polyacanthus
ENSMUSG00000032044	Rpusd4	100	77.719	ENSAMEG00000000127	-	100	77.719	Ailuropoda_melanoleuca
ENSMUSG00000032044	Rpusd4	80	86.290	ENSAMEG00000005953	-	100	86.290	Ailuropoda_melanoleuca
ENSMUSG00000032044	Rpusd4	90	48.688	ENSACIG00000003533	rpusd4	98	49.704	Amphilophus_citrinellus
ENSMUSG00000032044	Rpusd4	88	50.893	ENSAOCG00000015409	rpusd4	83	50.893	Amphiprion_ocellaris
ENSMUSG00000032044	Rpusd4	88	50.737	ENSAPEG00000018935	rpusd4	83	51.190	Amphiprion_percula
ENSMUSG00000032044	Rpusd4	89	51.176	ENSATEG00000008059	rpusd4	84	51.176	Anabas_testudineus
ENSMUSG00000032044	Rpusd4	73	60.215	ENSAPLG00000013250	RPUSD4	99	58.983	Anas_platyrhynchos
ENSMUSG00000032044	Rpusd4	97	60.598	ENSACAG00000000189	RPUSD4	100	60.598	Anolis_carolinensis
ENSMUSG00000032044	Rpusd4	99	80.376	ENSANAG00000024050	RPUSD4	100	80.376	Aotus_nancymaae
ENSMUSG00000032044	Rpusd4	91	51.585	ENSACLG00000020996	rpusd4	87	51.585	Astatotilapia_calliptera
ENSMUSG00000032044	Rpusd4	92	48.889	ENSAMXG00000031479	rpusd4	94	50.298	Astyanax_mexicanus
ENSMUSG00000032044	Rpusd4	98	74.462	ENSBTAG00000020900	RPUSD4	98	74.462	Bos_taurus
ENSMUSG00000032044	Rpusd4	98	80.000	ENSCJAG00000042850	RPUSD4	93	80.000	Callithrix_jacchus
ENSMUSG00000032044	Rpusd4	100	78.307	ENSCAFG00000010488	RPUSD4	100	78.307	Canis_familiaris
ENSMUSG00000032044	Rpusd4	100	78.307	ENSCAFG00020010621	RPUSD4	100	78.307	Canis_lupus_dingo
ENSMUSG00000032044	Rpusd4	98	75.335	ENSCHIG00000009975	RPUSD4	98	75.335	Capra_hircus
ENSMUSG00000032044	Rpusd4	98	81.351	ENSTSYG00000008456	RPUSD4	98	81.351	Carlito_syrichta
ENSMUSG00000032044	Rpusd4	68	79.070	ENSCAPG00000006040	RPUSD4	100	79.070	Cavia_aperea
ENSMUSG00000032044	Rpusd4	100	77.719	ENSCPOG00000014971	RPUSD4	100	77.719	Cavia_porcellus
ENSMUSG00000032044	Rpusd4	99	80.914	ENSCCAG00000027838	RPUSD4	100	80.914	Cebus_capucinus
ENSMUSG00000032044	Rpusd4	100	79.576	ENSCATG00000041570	RPUSD4	100	79.576	Cercocebus_atys
ENSMUSG00000032044	Rpusd4	100	79.310	ENSCLAG00000016553	RPUSD4	100	79.310	Chinchilla_lanigera
ENSMUSG00000032044	Rpusd4	100	79.576	ENSCSAG00000002274	RPUSD4	100	79.576	Chlorocebus_sabaeus
ENSMUSG00000032044	Rpusd4	74	82.857	ENSCHOG00000010249	RPUSD4	99	82.857	Choloepus_hoffmanni
ENSMUSG00000032044	Rpusd4	75	67.719	ENSCPBG00000011175	RPUSD4	98	67.719	Chrysemys_picta_bellii
ENSMUSG00000032044	Rpusd4	70	43.015	ENSCSAVG00000000872	-	53	43.015	Ciona_savignyi
ENSMUSG00000032044	Rpusd4	100	79.045	ENSCANG00000039684	RPUSD4	100	79.045	Colobus_angolensis_palliatus
ENSMUSG00000032044	Rpusd4	100	89.655	ENSCGRG00001024141	Rpusd4	100	89.655	Cricetulus_griseus_chok1gshd
ENSMUSG00000032044	Rpusd4	100	89.655	ENSCGRG00000014415	Rpusd4	100	89.655	Cricetulus_griseus_crigri
ENSMUSG00000032044	Rpusd4	88	50.296	ENSCVAG00000008761	rpusd4	86	50.296	Cyprinodon_variegatus
ENSMUSG00000032044	Rpusd4	88	50.592	ENSCVAG00000000392	rpusd4	95	50.592	Cyprinodon_variegatus
ENSMUSG00000032044	Rpusd4	85	50.613	ENSDARG00000012674	rpusd4	91	50.613	Danio_rerio
ENSMUSG00000032044	Rpusd4	100	75.979	ENSDNOG00000020026	RPUSD4	100	75.979	Dasypus_novemcinctus
ENSMUSG00000032044	Rpusd4	98	80.593	ENSDORG00000016717	Rpusd4	98	80.593	Dipodomys_ordii
ENSMUSG00000032044	Rpusd4	99	77.333	ENSETEG00000013953	RPUSD4	99	77.333	Echinops_telfairi
ENSMUSG00000032044	Rpusd4	100	79.310	ENSEASG00005022982	RPUSD4	100	79.310	Equus_asinus_asinus
ENSMUSG00000032044	Rpusd4	100	79.310	ENSECAG00000000557	RPUSD4	100	79.310	Equus_caballus
ENSMUSG00000032044	Rpusd4	80	79.348	ENSEEUG00000014036	RPUSD4	80	79.348	Erinaceus_europaeus
ENSMUSG00000032044	Rpusd4	96	51.862	ENSELUG00000008075	rpusd4	97	51.862	Esox_lucius
ENSMUSG00000032044	Rpusd4	100	78.249	ENSFCAG00000029789	RPUSD4	100	78.249	Felis_catus
ENSMUSG00000032044	Rpusd4	89	58.112	ENSFALG00000005171	RPUSD4	99	58.112	Ficedula_albicollis
ENSMUSG00000032044	Rpusd4	99	80.645	ENSFDAG00000014307	RPUSD4	99	80.645	Fukomys_damarensis
ENSMUSG00000032044	Rpusd4	96	47.967	ENSFHEG00000004329	rpusd4	94	47.967	Fundulus_heteroclitus
ENSMUSG00000032044	Rpusd4	85	51.682	ENSGMOG00000017726	rpusd4	96	51.682	Gadus_morhua
ENSMUSG00000032044	Rpusd4	92	55.182	ENSGALG00000024326	RPUSD4	100	55.956	Gallus_gallus
ENSMUSG00000032044	Rpusd4	87	49.263	ENSGAFG00000021559	rpusd4	86	49.263	Gambusia_affinis
ENSMUSG00000032044	Rpusd4	85	50.307	ENSGACG00000001657	rpusd4	97	50.714	Gasterosteus_aculeatus
ENSMUSG00000032044	Rpusd4	88	63.582	ENSGAGG00000000132	RPUSD4	93	63.582	Gopherus_agassizii
ENSMUSG00000032044	Rpusd4	100	77.984	ENSGGOG00000016494	RPUSD4	100	77.984	Gorilla_gorilla
ENSMUSG00000032044	Rpusd4	91	51.585	ENSHBUG00000022838	rpusd4	87	51.585	Haplochromis_burtoni
ENSMUSG00000032044	Rpusd4	100	79.841	ENSHGLG00000002285	RPUSD4	100	79.841	Heterocephalus_glaber_female
ENSMUSG00000032044	Rpusd4	100	79.841	ENSHGLG00100006385	RPUSD4	100	79.841	Heterocephalus_glaber_male
ENSMUSG00000032044	Rpusd4	86	50.915	ENSHCOG00000006612	rpusd4	83	50.915	Hippocampus_comes
ENSMUSG00000032044	Rpusd4	86	52.744	ENSIPUG00000023879	rusd4	85	52.744	Ictalurus_punctatus
ENSMUSG00000032044	Rpusd4	97	80.769	ENSSTOG00000025280	RPUSD4	100	80.769	Ictidomys_tridecemlineatus
ENSMUSG00000032044	Rpusd4	99	83.065	ENSJJAG00000018673	Rpusd4	100	83.065	Jaculus_jaculus
ENSMUSG00000032044	Rpusd4	85	53.374	ENSKMAG00000021805	rpusd4	84	53.374	Kryptolebias_marmoratus
ENSMUSG00000032044	Rpusd4	86	51.829	ENSLBEG00000020394	rpusd4	91	51.829	Labrus_bergylta
ENSMUSG00000032044	Rpusd4	85	61.111	ENSLACG00000011028	RPUSD4	94	56.684	Latimeria_chalumnae
ENSMUSG00000032044	Rpusd4	87	48.640	ENSLOCG00000003124	rpusd4	88	47.416	Lepisosteus_oculatus
ENSMUSG00000032044	Rpusd4	99	78.342	ENSLAFG00000005211	RPUSD4	99	78.342	Loxodonta_africana
ENSMUSG00000032044	Rpusd4	100	79.576	ENSMFAG00000039513	RPUSD4	100	79.576	Macaca_fascicularis
ENSMUSG00000032044	Rpusd4	100	79.310	ENSMMUG00000007933	RPUSD4	100	79.310	Macaca_mulatta
ENSMUSG00000032044	Rpusd4	100	79.310	ENSMNEG00000027414	RPUSD4	100	79.310	Macaca_nemestrina
ENSMUSG00000032044	Rpusd4	100	79.310	ENSMLEG00000042461	RPUSD4	100	79.310	Mandrillus_leucophaeus
ENSMUSG00000032044	Rpusd4	87	49.851	ENSMAMG00000023839	rpusd4	98	46.073	Mastacembelus_armatus
ENSMUSG00000032044	Rpusd4	91	51.585	ENSMZEG00005011999	rpusd4	87	51.585	Maylandia_zebra
ENSMUSG00000032044	Rpusd4	74	60.714	ENSMGAG00000000840	RPUSD4	99	57.716	Meleagris_gallopavo
ENSMUSG00000032044	Rpusd4	100	87.003	ENSMAUG00000010280	Rpusd4	100	87.003	Mesocricetus_auratus
ENSMUSG00000032044	Rpusd4	99	79.412	ENSMICG00000015979	RPUSD4	94	85.531	Microcebus_murinus
ENSMUSG00000032044	Rpusd4	99	86.702	ENSMOCG00000000661	Rpusd4	99	86.702	Microtus_ochrogaster
ENSMUSG00000032044	Rpusd4	82	52.381	ENSMMOG00000021731	rpusd4	93	52.381	Mola_mola
ENSMUSG00000032044	Rpusd4	86	74.540	ENSMODG00000004521	RPUSD4	84	74.540	Monodelphis_domestica
ENSMUSG00000032044	Rpusd4	80	51.948	ENSMALG00000005839	rpusd4	97	50.621	Monopterus_albus
ENSMUSG00000032044	Rpusd4	100	97.613	MGP_CAROLIEiJ_G0031954	Rpusd4	100	97.613	Mus_caroli
ENSMUSG00000032044	Rpusd4	100	95.756	MGP_PahariEiJ_G0014819	Rpusd4	100	95.756	Mus_pahari
ENSMUSG00000032044	Rpusd4	100	98.408	MGP_SPRETEiJ_G0033078	Rpusd4	100	98.408	Mus_spretus
ENSMUSG00000032044	Rpusd4	98	76.280	ENSMPUG00000006608	RPUSD4	99	76.280	Mustela_putorius_furo
ENSMUSG00000032044	Rpusd4	89	83.284	ENSMLUG00000017328	-	96	78.082	Myotis_lucifugus
ENSMUSG00000032044	Rpusd4	67	83.465	ENSMLUG00000029348	-	100	83.465	Myotis_lucifugus
ENSMUSG00000032044	Rpusd4	99	82.447	ENSNGAG00000020847	Rpusd4	99	82.447	Nannospalax_galili
ENSMUSG00000032044	Rpusd4	86	53.191	ENSNBRG00000005207	rpusd4	95	53.191	Neolamprologus_brichardi
ENSMUSG00000032044	Rpusd4	99	80.108	ENSNLEG00000007465	RPUSD4	99	80.108	Nomascus_leucogenys
ENSMUSG00000032044	Rpusd4	89	73.653	ENSMEUG00000004370	RPUSD4	90	73.653	Notamacropus_eugenii
ENSMUSG00000032044	Rpusd4	70	58.113	ENSOPRG00000013141	-	100	58.113	Ochotona_princeps
ENSMUSG00000032044	Rpusd4	100	78.780	ENSODEG00000004577	RPUSD4	100	78.780	Octodon_degus
ENSMUSG00000032044	Rpusd4	94	51.944	ENSONIG00000018879	rpusd4	96	51.944	Oreochromis_niloticus
ENSMUSG00000032044	Rpusd4	82	66.134	ENSOANG00000007247	RPUSD4	100	66.134	Ornithorhynchus_anatinus
ENSMUSG00000032044	Rpusd4	93	84.286	ENSOCUG00000017039	RPUSD4	93	84.286	Oryctolagus_cuniculus
ENSMUSG00000032044	Rpusd4	93	48.739	ENSORLG00000002750	rpusd4	97	48.739	Oryzias_latipes
ENSMUSG00000032044	Rpusd4	80	51.803	ENSORLG00020002044	rpusd4	75	51.803	Oryzias_latipes_hni
ENSMUSG00000032044	Rpusd4	88	50.296	ENSORLG00015020034	rpusd4	83	50.296	Oryzias_latipes_hsok
ENSMUSG00000032044	Rpusd4	86	51.212	ENSOMEG00000004861	rpusd4	81	51.212	Oryzias_melastigma
ENSMUSG00000032044	Rpusd4	99	77.273	ENSOGAG00000008922	RPUSD4	99	77.273	Otolemur_garnettii
ENSMUSG00000032044	Rpusd4	93	78.187	ENSOARG00000012238	RPUSD4	96	76.164	Ovis_aries
ENSMUSG00000032044	Rpusd4	100	78.780	ENSPPAG00000042883	RPUSD4	93	78.780	Pan_paniscus
ENSMUSG00000032044	Rpusd4	100	78.249	ENSPPRG00000003081	RPUSD4	100	78.249	Panthera_pardus
ENSMUSG00000032044	Rpusd4	100	78.249	ENSPTIG00000012059	RPUSD4	100	78.249	Panthera_tigris_altaica
ENSMUSG00000032044	Rpusd4	95	81.793	ENSPTRG00000004454	RPUSD4	95	81.793	Pan_troglodytes
ENSMUSG00000032044	Rpusd4	100	79.576	ENSPANG00000015040	RPUSD4	100	79.576	Papio_anubis
ENSMUSG00000032044	Rpusd4	88	57.784	ENSPKIG00000023986	rpusd4	85	57.784	Paramormyrops_kingsleyae
ENSMUSG00000032044	Rpusd4	79	66.333	ENSPSIG00000014268	RPUSD4	95	66.333	Pelodiscus_sinensis
ENSMUSG00000032044	Rpusd4	90	47.253	ENSPMGG00000002806	rpusd4	95	47.253	Periophthalmus_magnuspinnatus
ENSMUSG00000032044	Rpusd4	100	80.637	ENSPEMG00000000278	Rpusd4	100	80.637	Peromyscus_maniculatus_bairdii
ENSMUSG00000032044	Rpusd4	81	45.294	ENSPMAG00000008183	rpusd4	98	44.706	Petromyzon_marinus
ENSMUSG00000032044	Rpusd4	89	73.353	ENSPCIG00000010212	RPUSD4	92	73.353	Phascolarctos_cinereus
ENSMUSG00000032044	Rpusd4	95	48.257	ENSPFOG00000019030	rpusd4	96	48.257	Poecilia_formosa
ENSMUSG00000032044	Rpusd4	95	48.787	ENSPLAG00000016848	rpusd4	93	48.787	Poecilia_latipinna
ENSMUSG00000032044	Rpusd4	95	47.709	ENSPMEG00000017534	rpusd4	93	47.709	Poecilia_mexicana
ENSMUSG00000032044	Rpusd4	91	49.292	ENSPREG00000005689	rpusd4	89	49.292	Poecilia_reticulata
ENSMUSG00000032044	Rpusd4	100	78.780	ENSPPYG00000004043	RPUSD4	100	78.780	Pongo_abelii
ENSMUSG00000032044	Rpusd4	79	80.000	ENSPCAG00000000753	RPUSD4	82	77.838	Procavia_capensis
ENSMUSG00000032044	Rpusd4	98	73.046	ENSPCOG00000020694	RPUSD4	100	73.046	Propithecus_coquereli
ENSMUSG00000032044	Rpusd4	99	80.749	ENSPVAG00000000988	RPUSD4	99	80.749	Pteropus_vampyrus
ENSMUSG00000032044	Rpusd4	91	50.432	ENSPNYG00000009652	rpusd4	87	50.432	Pundamilia_nyererei
ENSMUSG00000032044	Rpusd4	88	51.796	ENSPNAG00000012264	rpusd4	88	51.796	Pygocentrus_nattereri
ENSMUSG00000032044	Rpusd4	100	92.573	ENSRNOG00000011567	Rpusd4	100	92.573	Rattus_norvegicus
ENSMUSG00000032044	Rpusd4	96	81.994	ENSRBIG00000034842	RPUSD4	100	80.106	Rhinopithecus_bieti
ENSMUSG00000032044	Rpusd4	96	81.994	ENSRROG00000039753	RPUSD4	100	80.106	Rhinopithecus_roxellana
ENSMUSG00000032044	Rpusd4	99	80.376	ENSSBOG00000030413	RPUSD4	100	80.376	Saimiri_boliviensis_boliviensis
ENSMUSG00000032044	Rpusd4	80	73.510	ENSSHAG00000008304	RPUSD4	100	73.510	Sarcophilus_harrisii
ENSMUSG00000032044	Rpusd4	93	55.462	ENSSFOG00015006203	rpusd4	96	55.742	Scleropages_formosus
ENSMUSG00000032044	Rpusd4	96	48.641	ENSSMAG00000020978	rpusd4	92	48.641	Scophthalmus_maximus
ENSMUSG00000032044	Rpusd4	89	48.680	ENSSDUG00000013399	rpusd4	89	48.680	Seriola_dumerili
ENSMUSG00000032044	Rpusd4	89	48.974	ENSSLDG00000023507	rpusd4	89	48.974	Seriola_lalandi_dorsalis
ENSMUSG00000032044	Rpusd4	91	60.983	ENSSPUG00000001401	RPUSD4	96	61.561	Sphenodon_punctatus
ENSMUSG00000032044	Rpusd4	89	51.176	ENSSPAG00000012163	rpusd4	87	51.176	Stegastes_partitus
ENSMUSG00000032044	Rpusd4	99	78.820	ENSSSCG00000015233	RPUSD4	99	78.820	Sus_scrofa
ENSMUSG00000032044	Rpusd4	79	61.333	ENSTGUG00000000773	RPUSD4	100	61.333	Taeniopygia_guttata
ENSMUSG00000032044	Rpusd4	86	51.212	ENSTRUG00000012283	rpusd4	84	51.212	Takifugu_rubripes
ENSMUSG00000032044	Rpusd4	86	50.000	ENSTNIG00000014676	rpusd4	84	50.000	Tetraodon_nigroviridis
ENSMUSG00000032044	Rpusd4	100	76.923	ENSTTRG00000001555	RPUSD4	100	76.923	Tursiops_truncatus
ENSMUSG00000032044	Rpusd4	100	77.188	ENSUMAG00000002219	RPUSD4	100	77.188	Ursus_maritimus
ENSMUSG00000032044	Rpusd4	70	81.132	ENSVPAG00000001066	RPUSD4	100	81.132	Vicugna_pacos
ENSMUSG00000032044	Rpusd4	100	78.307	ENSVVUG00000020101	RPUSD4	100	78.307	Vulpes_vulpes
ENSMUSG00000032044	Rpusd4	87	50.296	ENSXCOG00000004676	rpusd4	88	50.148	Xiphophorus_couchianus
ENSMUSG00000032044	Rpusd4	87	50.445	ENSXMAG00000023351	rpusd4	86	50.445	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001522	pseudouridine synthesis	-	IEA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005739	mitochondrion	18614015.	HDA	Component
GO:0008033	tRNA processing	-	IEA	Process
GO:0009451	RNA modification	-	IEA	Process
GO:0009982	pseudouridine synthase activity	-	IEA	Function
GO:0016853	isomerase activity	-	IEA	Function
GO:0070131	positive regulation of mitochondrial translation	-	ISO	Process