EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000032050 (Gene tree)
Gene ID: 19684
Gene Symbol: Rdx
Alias: -
Full Name: radixin
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 41563
Position: chr9: 52047173-52088735
Accession: 97887
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000061352	-	1502	-	ENSMUSP00000055303	389 (aa)	-	Q7TSG6
ENSMUST00000000590	-	4380	-	ENSMUSP00000000590	583 (aa)	-	P26043
ENSMUST00000163153	-	4131	-	ENSMUSP00000128249	583 (aa)	-	P26043

Gene Model

Click here to download ENSMUSG00000032050's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04530	Tight junction	KEGG
mmu04810	Regulation of actin cytoskeleton	KEGG
mmu05205	Proteoglycans in cancer	KEGG
mmu05206	MicroRNAs in cancer	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000032050's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000032050	Rdx	100	98.456	ENSG00000137710	RDX	100	100.000	Homo_sapiens
ENSMUSG00000032050	Rdx	93	89.532	ENSG00000147065	MSN	100	88.350	Homo_sapiens
ENSMUSG00000032050	Rdx	93	84.022	ENSG00000092820	EZR	100	76.280	Homo_sapiens
ENSMUSG00000032050	Rdx	93	88.981	ENSMUSG00000031207	Msn	100	80.961	Mus_musculus
ENSMUSG00000032050	Rdx	93	83.196	ENSMUSG00000052397	Ezr	100	75.939	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001726	ruffle	9563848.	IDA	Component
GO:0003779	actin binding	-	ISO	Function
GO:0005515	protein binding	9472040.12068294.12522145.12554651.16615918.23055941.	IPI	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005886	plasma membrane	21047789.	IDA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0005902	microvillus	9472040.12068294.15093731.21047789.	IDA	Component
GO:0005902	microvillus	-	ISO	Component
GO:0005913	cell-cell adherens junction	-	ISO	Component
GO:0005925	focal adhesion	-	ISO	Component
GO:0008092	cytoskeletal protein binding	-	IEA	Function
GO:0008360	regulation of cell shape	-	ISO	Process
GO:0008361	regulation of cell size	-	ISO	Process
GO:0010628	positive regulation of gene expression	-	ISO	Process
GO:0016020	membrane	-	IEA	Component
GO:0016324	apical plasma membrane	-	ISO	Component
GO:0019904	protein domain specific binding	21047789.	IPI	Function
GO:0030027	lamellipodium	9563848.21047789.	IDA	Component
GO:0030033	microvillus assembly	12068294.	IMP	Process
GO:0030175	filopodium	9563848.21047789.	IDA	Component
GO:0030315	T-tubule	-	ISO	Component
GO:0030335	positive regulation of cell migration	-	ISO	Process
GO:0030496	midbody	-	ISO	Component
GO:0030864	cortical actin cytoskeleton	21047789.	IDA	Component
GO:0032154	cleavage furrow	-	ISO	Component
GO:0032231	regulation of actin filament bundle assembly	-	ISO	Process
GO:0032420	stereocilium	17021174.	IDA	Component
GO:0034111	negative regulation of homotypic cell-cell adhesion	-	ISO	Process
GO:0034260	negative regulation of GTPase activity	-	ISO	Process
GO:0042803	protein homodimerization activity	16582480.	IMP	Function
GO:0042995	cell projection	-	IEA	Component
GO:0043087	regulation of GTPase activity	-	ISO	Process
GO:0043209	myelin sheath	17634366.	HDA	Component
GO:0045176	apical protein localization	12068294.	IMP	Process
GO:0045176	apical protein localization	-	ISO	Process
GO:0045177	apical part of cell	9890997.	IDA	Component
GO:0045184	establishment of protein localization	21047789.	IMP	Process
GO:0045792	negative regulation of cell size	-	ISO	Process
GO:0051016	barbed-end actin filament capping	-	ISO	Process
GO:0051117	ATPase binding	-	ISO	Function
GO:0051286	cell tip	-	ISO	Component
GO:0051693	actin filament capping	-	IEA	Process
GO:0061028	establishment of endothelial barrier	-	ISO	Process
GO:0071944	cell periphery	-	ISO	Component
GO:0072659	protein localization to plasma membrane	-	ISO	Process
GO:0097067	cellular response to thyroid hormone stimulus	21047789.	IMP	Process
GO:1900027	regulation of ruffle assembly	-	ISO	Process
GO:1900087	positive regulation of G1/S transition of mitotic cell cycle	21047789.	IMP	Process
GO:1902115	regulation of organelle assembly	-	ISO	Process
GO:1902966	positive regulation of protein localization to early endosome	-	ISO	Process
GO:1903364	positive regulation of cellular protein catabolic process	-	ISO	Process
GO:1903392	negative regulation of adherens junction organization	-	ISO	Process
GO:2000643	positive regulation of early endosome to late endosome transport	-	ISO	Process