EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000032096 (Gene tree)
Gene ID: 213827
Gene Symbol: Arcn1
Alias: 4632432M07Rik|delta-COP|nur17|pale coat neuro
Full Name: archain 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 26282
Position: chr9: 44741564-44767845
Accession: 2387591
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000215140	-	3497	-	-	- (aa)	-	-
ENSMUST00000150160	-	2956	-	-	- (aa)	-	-
ENSMUST00000125164	-	739	-	-	- (aa)	-	-
ENSMUST00000217199	-	3211	-	-	- (aa)	-	-
ENSMUST00000217194	-	2616	-	-	- (aa)	-	-
ENSMUST00000034607	-	4072	-	ENSMUSP00000034607	511 (aa)	-	Q5XJY5

Gene Model

Click here to download ENSMUSG00000032096's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000032096's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000032096	Arcn1	100	48.859	WBGene00015734	copd-1	100	50.189	Caenorhabditis_elegans
ENSMUSG00000032096	Arcn1	100	99.022	ENSG00000095139	ARCN1	100	99.022	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005737	cytoplasm	-	IEA	Component
GO:0005783	endoplasmic reticulum	20502676.	IDA	Component
GO:0005794	Golgi apparatus	20502676.	IDA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0006888	ER to Golgi vesicle-mediated transport	21873635.	IBA	Process
GO:0006890	retrograde vesicle-mediated transport, Golgi to ER	21873635.	IBA	Process
GO:0008344	adult locomotory behavior	20502676.	IMP	Process
GO:0015031	protein transport	-	IEA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016192	vesicle-mediated transport	-	IEA	Process
GO:0021691	cerebellar Purkinje cell layer maturation	20502676.	IMP	Process
GO:0030126	COPI vesicle coat	21873635.	IBA	Component
GO:0030137	COPI-coated vesicle	21873635.	IBA	Component
GO:0030137	COPI-coated vesicle	20502676.	IDA	Component
GO:0031410	cytoplasmic vesicle	-	IEA	Component
GO:0043473	pigmentation	20502676.	IMP	Process
GO:0048193	Golgi vesicle transport	20502676.	IMP	Process
GO:0051645	Golgi localization	21873635.	IBA	Process