EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000032097 (Gene tree)
Gene ID
13209
Gene Symbol
Ddx6
Alias
1110001P04Rik|C430015D01Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck
Full Name
DEAD (Asp-Glu-Ala-Asp) box polypeptide 6
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
35840 bases
Position
chr9:44604892-44640731
Accession
104976
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000128421DEADPF00270.293.3e-4311
ENSMUSP00000149620DEADPF00270.293.3e-4311
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000217034-6029XM_011242391ENSMUSP00000149620483 (aa)XP_011240693P54823
ENSMUST00000213697-3502--- (aa)--
ENSMUST00000170489-6065XM_011242392ENSMUSP00000128421483 (aa)XP_011240694P54823
Gene Model
Click here to download ENSMUSG00000032097's gene model file
Pathways
Pathway IDPathway NameSource
mmu03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000032097's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000032097Ddx68030.256ENSMUSG00000026404Ddx596230.256
ENSMUSG00000032097Ddx66830.678ENSMUSG00000020719Ddx55530.678
ENSMUSG00000032097Ddx67731.159ENSMUSG00000003360Ddx235131.175
ENSMUSG00000032097Ddx67731.771ENSMUSG00000070291Ddx435931.771
ENSMUSG00000032097Ddx67631.915ENSMUSG00000020677Ddx526331.915
ENSMUSG00000032097Ddx67635.526ENSMUSG00000015023Ddx19a7935.526
ENSMUSG00000032097Ddx66931.755ENSMUSG00000000787Ddx3x5431.755
ENSMUSG00000032097Ddx67433.784ENSMUSG00000032101Ddx257834.555
ENSMUSG00000032097Ddx67833.419ENSMUSG00000027905Ddx205032.767
ENSMUSG00000032097Ddx67630.534ENSMUSG00000069045Ddx3y6030.534
ENSMUSG00000032097Ddx67533.333ENSMUSG00000057788Ddx497733.333
ENSMUSG00000032097Ddx67935.659ENSMUSG00000019432Ddx39b9934.014
ENSMUSG00000032097Ddx67430.025ENSMUSG00000004393Ddx568333.981
ENSMUSG00000032097Ddx67131.742ENSMUSG00000021494Ddx415732.022
ENSMUSG00000032097Ddx67637.398ENSMUSG00000107906Gm55809037.398
ENSMUSG00000032097Ddx66832.479ENSMUSG00000029389Ddx555932.479
ENSMUSG00000032097Ddx68234.750ENSMUSG00000005481Ddx399634.223
ENSMUSG00000032097Ddx66940.678ENSMUSG00000037149Ddx15340.678
ENSMUSG00000032097Ddx67832.987ENSMUSG00000030204Ddx479331.759
ENSMUSG00000032097Ddx67637.398ENSMUSG00000094973Gm89949037.398
ENSMUSG00000032097Ddx66932.402ENSMUSG00000039224D1Pas15432.402
ENSMUSG00000032097Ddx67837.566ENSMUSG00000025580Eif4a39137.566
ENSMUSG00000032097Ddx67430.894ENSMUSG00000055065Ddx175830.971
ENSMUSG00000032097Ddx67638.441ENSMUSG00000022884Eif4a29336.986
ENSMUSG00000032097Ddx67638.710ENSMUSG00000059796Eif4a19138.710
ENSMUSG00000032097Ddx67132.782ENSMUSG00000021758Ddx45132.782
ENSMUSG00000032097Ddx66630.699ENSMUSG00000001674Ddx185030.699
ENSMUSG00000032097Ddx67635.263ENSMUSG00000033658Ddx19b7835.263
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000032097Ddx610097.723ENSG00000110367DDX610097.723Homo_sapiens
ENSMUSG00000032097Ddx610089.256ENSAPOG00000007695ddx610089.256Acanthochromis_polyacanthus
ENSMUSG00000032097Ddx610097.930ENSAMEG00000006073DDX610097.930Ailuropoda_melanoleuca
ENSMUSG00000032097Ddx610075.826ENSACIG00000023989ddx610075.620Amphilophus_citrinellus
ENSMUSG00000032097Ddx610089.256ENSAOCG00000022849ddx610089.256Amphiprion_ocellaris
ENSMUSG00000032097Ddx610089.256ENSAPEG00000013047ddx610089.256Amphiprion_percula
ENSMUSG00000032097Ddx610089.855ENSATEG00000009693ddx610089.855Anabas_testudineus
ENSMUSG00000032097Ddx69997.510ENSAPLG00000007274DDX69997.510Anas_platyrhynchos
ENSMUSG00000032097Ddx69996.480ENSACAG00000017134DDX69996.480Anolis_carolinensis
ENSMUSG00000032097Ddx610068.530ENSANAG00000032103-9083.684Aotus_nancymaae
ENSMUSG00000032097Ddx610092.593ENSANAG00000038280-10092.593Aotus_nancymaae
ENSMUSG00000032097Ddx610089.855ENSACLG00000022164ddx610089.855Astatotilapia_calliptera
ENSMUSG00000032097Ddx69989.027ENSAMXG00000019553ddx69989.027Astyanax_mexicanus
ENSMUSG00000032097Ddx69997.925ENSBTAG00000009067DDX69997.925Bos_taurus
ENSMUSG00000032097Ddx610097.930ENSCJAG00000013591DDX610097.930Callithrix_jacchus
ENSMUSG00000032097Ddx610097.930ENSCAFG00000012442DDX610097.930Canis_familiaris
ENSMUSG00000032097Ddx610097.930ENSCAFG00020013150DDX610097.930Canis_lupus_dingo
ENSMUSG00000032097Ddx69997.718ENSCHIG00000026114DDX69997.718Capra_hircus
ENSMUSG00000032097Ddx610097.930ENSTSYG00000026313DDX610097.930Carlito_syrichta
ENSMUSG00000032097Ddx68163.951ENSCAPG00000013040DDX610063.951Cavia_aperea
ENSMUSG00000032097Ddx610091.511ENSCPOG00000010587Ddx610091.511Cavia_porcellus
ENSMUSG00000032097Ddx610093.789ENSCCAG00000021636-10093.789Cebus_capucinus
ENSMUSG00000032097Ddx610071.605ENSCATG00000009414-10070.757Cercocebus_atys
ENSMUSG00000032097Ddx610097.723ENSCATG00000045025DDX610097.723Cercocebus_atys
ENSMUSG00000032097Ddx610097.723ENSCLAG00000016749DDX610097.723Chinchilla_lanigera
ENSMUSG00000032097Ddx610097.723ENSCSAG00000002564DDX610097.723Chlorocebus_sabaeus
ENSMUSG00000032097Ddx68699.519ENSCHOG00000007565DDX610099.519Choloepus_hoffmanni
ENSMUSG00000032097Ddx610097.101ENSCPBG00000004323DDX610097.101Chrysemys_picta_bellii
ENSMUSG00000032097Ddx610087.578ENSCANG00000042664DDX610087.578Colobus_angolensis_palliatus
ENSMUSG00000032097Ddx610098.137ENSCGRG00001023465Ddx610098.137Cricetulus_griseus_chok1gshd
ENSMUSG00000032097Ddx610098.137ENSCGRG00000014165Ddx610098.137Cricetulus_griseus_crigri
ENSMUSG00000032097Ddx610089.050ENSCSEG00000006875ddx610089.050Cynoglossus_semilaevis
ENSMUSG00000032097Ddx69987.759ENSCVAG00000002540ddx69987.759Cyprinodon_variegatus
ENSMUSG00000032097Ddx69989.027ENSDARG00000061338ddx69988.613Danio_rerio
ENSMUSG00000032097Ddx610093.196ENSDNOG00000014447DDX610093.196Dasypus_novemcinctus
ENSMUSG00000032097Ddx68889.412ENSDORG00000001037Ddx610089.412Dipodomys_ordii
ENSMUSG00000032097Ddx66599.612ENSETEG00000007589-7099.612Echinops_telfairi
ENSMUSG00000032097Ddx65487.405ENSEBUG00000010009ddx67187.405Eptatretus_burgeri
ENSMUSG00000032097Ddx610097.930ENSEASG00005004961DDX610097.930Equus_asinus_asinus
ENSMUSG00000032097Ddx610097.930ENSECAG00000000539DDX610097.930Equus_caballus
ENSMUSG00000032097Ddx68889.176ENSEEUG00000002824DDX610089.176Erinaceus_europaeus
ENSMUSG00000032097Ddx610085.801ENSELUG00000022660ddx610085.801Esox_lucius
ENSMUSG00000032097Ddx610097.930ENSFCAG00000029360DDX610097.930Felis_catus
ENSMUSG00000032097Ddx69997.303ENSFALG00000009831DDX69997.303Ficedula_albicollis
ENSMUSG00000032097Ddx610097.723ENSFDAG00000012457DDX610097.723Fukomys_damarensis
ENSMUSG00000032097Ddx69987.759ENSFHEG00000021202ddx69988.199Fundulus_heteroclitus
ENSMUSG00000032097Ddx69986.157ENSGMOG00000009542ddx69985.950Gadus_morhua
ENSMUSG00000032097Ddx69997.510ENSGALG00000033064DDX69997.510Gallus_gallus
ENSMUSG00000032097Ddx69987.785ENSGAFG00000020279ddx69987.578Gambusia_affinis
ENSMUSG00000032097Ddx610088.017ENSGACG00000012258ddx610087.603Gasterosteus_aculeatus
ENSMUSG00000032097Ddx610096.894ENSGAGG00000020608DDX610096.894Gopherus_agassizii
ENSMUSG00000032097Ddx610067.909ENSGGOG00000023765-10067.909Gorilla_gorilla
ENSMUSG00000032097Ddx610076.653ENSGGOG00000038856-10076.653Gorilla_gorilla
ENSMUSG00000032097Ddx610087.371ENSGGOG00000016751DDX610087.371Gorilla_gorilla
ENSMUSG00000032097Ddx610089.648ENSHBUG00000009651ddx610089.648Haplochromis_burtoni
ENSMUSG00000032097Ddx610097.930ENSHGLG00000004316DDX610097.930Heterocephalus_glaber_female
ENSMUSG00000032097Ddx610097.930ENSHGLG00100014595DDX610097.930Heterocephalus_glaber_male
ENSMUSG00000032097Ddx610087.910ENSHCOG00000012451ddx610088.115Hippocampus_comes
ENSMUSG00000032097Ddx69987.578ENSIPUG00000000616ddx69987.164Ictalurus_punctatus
ENSMUSG00000032097Ddx610097.930ENSSTOG00000014475DDX610097.930Ictidomys_tridecemlineatus
ENSMUSG00000032097Ddx610097.723ENSJJAG00000021630Ddx610097.723Jaculus_jaculus
ENSMUSG00000032097Ddx69988.382ENSKMAG00000003546ddx69988.382Kryptolebias_marmoratus
ENSMUSG00000032097Ddx610083.231ENSLBEG00000017823ddx610078.627Labrus_bergylta
ENSMUSG00000032097Ddx69993.182ENSLACG00000017153DDX69992.769Latimeria_chalumnae
ENSMUSG00000032097Ddx69989.050ENSLOCG00000000770ddx69989.050Lepisosteus_oculatus
ENSMUSG00000032097Ddx69997.718ENSLAFG00000011012DDX69997.718Loxodonta_africana
ENSMUSG00000032097Ddx610097.723ENSMFAG00000042472DDX610097.723Macaca_fascicularis
ENSMUSG00000032097Ddx610097.723ENSMMUG00000018651DDX610097.723Macaca_mulatta
ENSMUSG00000032097Ddx610069.151ENSMMUG00000047408-10069.772Macaca_mulatta
ENSMUSG00000032097Ddx610097.723ENSMNEG00000033959DDX610097.723Macaca_nemestrina
ENSMUSG00000032097Ddx610097.723ENSMLEG00000028151DDX610097.723Mandrillus_leucophaeus
ENSMUSG00000032097Ddx610088.391ENSMAMG00000013732ddx610087.373Mastacembelus_armatus
ENSMUSG00000032097Ddx610089.855ENSMZEG00005024098ddx610089.855Maylandia_zebra
ENSMUSG00000032097Ddx69997.510ENSMGAG00000004123DDX69997.510Meleagris_gallopavo
ENSMUSG00000032097Ddx610097.308ENSMAUG00000008886Ddx610097.308Mesocricetus_auratus
ENSMUSG00000032097Ddx610097.930ENSMICG00000011519DDX610097.930Microcebus_murinus
ENSMUSG00000032097Ddx610098.137ENSMOCG00000002068Ddx610098.137Microtus_ochrogaster
ENSMUSG00000032097Ddx610081.818ENSMMOG00000001233ddx610081.818Mola_mola
ENSMUSG00000032097Ddx610097.930ENSMODG00000013375DDX610097.930Monodelphis_domestica
ENSMUSG00000032097Ddx610084.298ENSMALG00000009308ddx610084.504Monopterus_albus
ENSMUSG00000032097Ddx610095.445MGP_CAROLIEiJ_G0032122Ddx610095.445Mus_caroli
ENSMUSG00000032097Ddx610099.379MGP_PahariEiJ_G0014991Ddx610099.379Mus_pahari
ENSMUSG00000032097Ddx610097.930ENSMPUG00000004857DDX610097.930Mustela_putorius_furo
ENSMUSG00000032097Ddx610097.516ENSMLUG00000003671DDX610097.516Myotis_lucifugus
ENSMUSG00000032097Ddx610097.930ENSNGAG00000016848Ddx610097.930Nannospalax_galili
ENSMUSG00000032097Ddx610080.745ENSNBRG00000003507ddx610080.745Neolamprologus_brichardi
ENSMUSG00000032097Ddx610097.723ENSNLEG00000007372DDX610097.723Nomascus_leucogenys
ENSMUSG00000032097Ddx610086.957ENSMEUG00000010556DDX610086.957Notamacropus_eugenii
ENSMUSG00000032097Ddx68180.307ENSOPRG00000016112DDX610080.307Ochotona_princeps
ENSMUSG00000032097Ddx610097.723ENSODEG00000007950DDX610097.723Octodon_degus
ENSMUSG00000032097Ddx610089.855ENSONIG00000005756ddx610089.441Oreochromis_niloticus
ENSMUSG00000032097Ddx68898.598ENSOANG00000003751DDX610098.598Ornithorhynchus_anatinus
ENSMUSG00000032097Ddx610097.516ENSOCUG00000005849DDX610097.516Oryctolagus_cuniculus
ENSMUSG00000032097Ddx610088.406ENSORLG00000002506ddx610087.992Oryzias_latipes
ENSMUSG00000032097Ddx610088.613ENSORLG00020016534ddx610088.199Oryzias_latipes_hni
ENSMUSG00000032097Ddx610087.785ENSORLG00015005301ddx610088.199Oryzias_latipes_hsok
ENSMUSG00000032097Ddx610087.785ENSOMEG00000001347ddx610088.199Oryzias_melastigma
ENSMUSG00000032097Ddx610097.930ENSOGAG00000007978DDX610097.930Otolemur_garnettii
ENSMUSG00000032097Ddx69997.718ENSOARG00000011455DDX69997.718Ovis_aries
ENSMUSG00000032097Ddx610077.893ENSPPAG00000040387-10077.893Pan_paniscus
ENSMUSG00000032097Ddx610097.723ENSPPAG00000034894DDX610097.723Pan_paniscus
ENSMUSG00000032097Ddx610067.081ENSPPAG00000039963-10066.874Pan_paniscus
ENSMUSG00000032097Ddx610097.930ENSPPRG00000009039DDX610097.930Panthera_pardus
ENSMUSG00000032097Ddx610097.930ENSPTIG00000018551DDX610097.930Panthera_tigris_altaica
ENSMUSG00000032097Ddx610077.686ENSPTRG00000050136-10077.686Pan_troglodytes
ENSMUSG00000032097Ddx610068.116ENSPTRG00000043896-10067.909Pan_troglodytes
ENSMUSG00000032097Ddx610097.723ENSPTRG00000004353DDX610097.723Pan_troglodytes
ENSMUSG00000032097Ddx610097.723ENSPANG00000018963DDX610097.723Papio_anubis
ENSMUSG00000032097Ddx69989.234ENSPKIG00000013728ddx69988.820Paramormyrops_kingsleyae
ENSMUSG00000032097Ddx610095.885ENSPSIG00000013230DDX610095.885Pelodiscus_sinensis
ENSMUSG00000032097Ddx610077.847ENSPMGG00000023707ddx610077.640Periophthalmus_magnuspinnatus
ENSMUSG00000032097Ddx69979.339ENSPMAG00000007168ddx69979.089Petromyzon_marinus
ENSMUSG00000032097Ddx69988.406ENSPFOG00000010555ddx69987.992Poecilia_formosa
ENSMUSG00000032097Ddx69988.199ENSPLAG00000019684ddx69988.199Poecilia_latipinna
ENSMUSG00000032097Ddx69988.406ENSPMEG00000019775ddx69987.992Poecilia_mexicana
ENSMUSG00000032097Ddx69987.785ENSPREG00000016082ddx69987.785Poecilia_reticulata
ENSMUSG00000032097Ddx610094.410ENSPPYG00000003942DDX610094.410Pongo_abelii
ENSMUSG00000032097Ddx610088.820ENSPCAG00000004767DDX610088.820Procavia_capensis
ENSMUSG00000032097Ddx610097.930ENSPCOG00000020762DDX610097.930Propithecus_coquereli
ENSMUSG00000032097Ddx610090.062ENSPVAG00000005421DDX610090.062Pteropus_vampyrus
ENSMUSG00000032097Ddx610089.648ENSPNYG00000008538ddx610089.648Pundamilia_nyererei
ENSMUSG00000032097Ddx610070.183ENSPNAG00000010102ddx610069.574Pygocentrus_nattereri
ENSMUSG00000032097Ddx610098.965ENSRNOG00000053932Ddx610098.965Rattus_norvegicus
ENSMUSG00000032097Ddx610069.530ENSRBIG00000038129-10069.262Rhinopithecus_bieti
ENSMUSG00000032097Ddx610097.723ENSRBIG00000032545DDX610097.723Rhinopithecus_bieti
ENSMUSG00000032097Ddx610067.081ENSRBIG00000027933-10067.702Rhinopithecus_bieti
ENSMUSG00000032097Ddx610070.186ENSRROG00000034419-10070.807Rhinopithecus_roxellana
ENSMUSG00000032097Ddx610097.723ENSRROG00000032478DDX610097.723Rhinopithecus_roxellana
ENSMUSG00000032097Ddx610069.877ENSRROG00000032664-10069.672Rhinopithecus_roxellana
ENSMUSG00000032097Ddx610097.930ENSSBOG00000029671DDX610097.930Saimiri_boliviensis_boliviensis
ENSMUSG00000032097Ddx610097.930ENSSHAG00000011424DDX610097.930Sarcophilus_harrisii
ENSMUSG00000032097Ddx69989.648ENSSFOG00015023211ddx69988.820Scleropages_formosus
ENSMUSG00000032097Ddx68250.378ENSSFOG00015005998DDX69749.492Scleropages_formosus
ENSMUSG00000032097Ddx610088.636ENSSMAG00000001253ddx610088.430Scophthalmus_maximus
ENSMUSG00000032097Ddx610089.876ENSSDUG00000019695ddx610089.876Seriola_dumerili
ENSMUSG00000032097Ddx610089.876ENSSLDG00000006167ddx610089.876Seriola_lalandi_dorsalis
ENSMUSG00000032097Ddx610097.930ENSSARG00000003219DDX610097.930Sorex_araneus
ENSMUSG00000032097Ddx69490.132ENSSPUG00000004404DDX69394.824Sphenodon_punctatus
ENSMUSG00000032097Ddx610089.463ENSSPAG00000023258ddx610089.463Stegastes_partitus
ENSMUSG00000032097Ddx610098.137ENSSSCG00000015097DDX610098.137Sus_scrofa
ENSMUSG00000032097Ddx69595.425ENSTGUG00000017360DDX610095.425Taeniopygia_guttata
ENSMUSG00000032097Ddx610088.223ENSTRUG00000011848ddx610088.223Takifugu_rubripes
ENSMUSG00000032097Ddx610089.050ENSTNIG00000016295ddx610089.050Tetraodon_nigroviridis
ENSMUSG00000032097Ddx610094.824ENSTTRG00000004313DDX610094.824Tursiops_truncatus
ENSMUSG00000032097Ddx610097.930ENSUAMG00000027749DDX610097.930Ursus_americanus
ENSMUSG00000032097Ddx610097.930ENSUMAG00000000993DDX610097.930Ursus_maritimus
ENSMUSG00000032097Ddx610095.652ENSVPAG00000005601DDX610095.652Vicugna_pacos
ENSMUSG00000032097Ddx610097.308ENSVVUG00000024121DDX610097.308Vulpes_vulpes
ENSMUSG00000032097Ddx69995.218ENSXETG00000010061ddx69995.010Xenopus_tropicalis
ENSMUSG00000032097Ddx69981.159ENSXCOG00000008560ddx69980.952Xiphophorus_couchianus
ENSMUSG00000032097Ddx69987.992ENSXMAG00000007620ddx69987.785Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000166nucleotide binding-IEAFunction
GO:0000792heterochromatin-ISOComponent
GO:0000932P-body25456498.IDAComponent
GO:0000932P-body20826699.ISOComponent
GO:0001520outer dense fiber-ISOComponent
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:0004386helicase activity-IEAFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus-ISOComponent
GO:0005730nucleolus-ISOComponent
GO:0005737cytoplasm20014101.IDAComponent
GO:0005737cytoplasm-ISOComponent
GO:0005739mitochondrion-ISOComponent
GO:0005829cytosol-ISOComponent
GO:0005913cell-cell adherens junction-ISOComponent
GO:0010494cytoplasmic stress granule-ISOComponent
GO:0016442RISC complex-ISOComponent
GO:0016787hydrolase activity-IEAFunction
GO:0019074viral RNA genome packaging-ISOProcess
GO:0019827stem cell population maintenance25456498.IMPProcess
GO:0019904protein domain specific binding-ISOFunction
GO:0033391chromatoid body-ISOComponent
GO:0033962cytoplasmic mRNA processing body assembly20826699.ISOProcess
GO:0036464cytoplasmic ribonucleoprotein granule-ISOComponent
GO:0045665negative regulation of neuron differentiation25456498.IMPProcess
GO:0048471perinuclear region of cytoplasm-ISOComponent
GO:0061830concave side of sperm head-ISOComponent
GO:0097227sperm annulus-ISOComponent

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