EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000032212 (Gene tree)
Gene ID: 66660
Gene Symbol: Sltm
Alias: 5730455C01Rik|5730555F13Rik|9130215G10Rik
Full Name: SAFB-like%2C transcription modulator
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 49481 bases
Position: chr9:70542754-70592234
Accession: 1913910
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000149059	RRM_5	PF13893.6	1.8e-07	1	1
ENSMUSP00000049112	RRM_5	PF13893.6	1.9e-07	1	1
ENSMUSP00000149059	RRM_1	PF00076.22	2e-10	1	1
ENSMUSP00000049112	RRM_1	PF00076.22	2e-10	1	1
ENSMUSP00000149059	SAP	PF02037.27	8.9e-09	1	1
ENSMUSP00000049112	SAP	PF02037.27	9.1e-09	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000217593	-	3319	-	ENSMUSP00000150324	664 (aa)	-	A0A1L1STF9
ENSMUST00000216881	-	2915	-	-	- (aa)	-	-
ENSMUST00000213808	-	1124	-	ENSMUSP00000149511	62 (aa)	-	A0A1L1SRL0
ENSMUST00000049263	-	3691	XM_006511349	ENSMUSP00000049112	1031 (aa)	XP_006511412	Q8CH25
ENSMUST00000214834	-	1786	-	-	- (aa)	-	-
ENSMUST00000213362	-	3042	-	-	- (aa)	-	-
ENSMUST00000215714	-	1066	-	-	- (aa)	-	-
ENSMUST00000216816	-	3755	XM_006511351	ENSMUSP00000149059	1013 (aa)	XP_006511414	Q8CH25

Gene Model

Click here to download ENSMUSG00000032212's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000032212's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000032212	Sltm	84	44.643	ENSMUSG00000042625	Safb2	55	39.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000032212	Sltm	98	91.249	ENSG00000137776	SLTM	100	91.000	Homo_sapiens
ENSMUSG00000032212	Sltm	99	48.774	ENSAPOG00000012346	sltm	52	45.076	Acanthochromis_polyacanthus
ENSMUSG00000032212	Sltm	95	89.501	ENSAMEG00000004537	SLTM	59	90.690	Ailuropoda_melanoleuca
ENSMUSG00000032212	Sltm	99	48.250	ENSACIG00000001971	sltm	99	48.092	Amphilophus_citrinellus
ENSMUSG00000032212	Sltm	99	49.197	ENSAOCG00000002747	sltm	52	44.633	Amphiprion_ocellaris
ENSMUSG00000032212	Sltm	99	49.244	ENSAPEG00000012366	sltm	52	46.053	Amphiprion_percula
ENSMUSG00000032212	Sltm	99	49.434	ENSATEG00000003763	sltm	59	45.600	Anabas_testudineus
ENSMUSG00000032212	Sltm	95	76.166	ENSAPLG00000013025	SLTM	59	75.298	Anas_platyrhynchos
ENSMUSG00000032212	Sltm	98	70.087	ENSACAG00000015120	SLTM	59	67.773	Anolis_carolinensis
ENSMUSG00000032212	Sltm	98	90.462	ENSANAG00000037031	SLTM	74	91.304	Aotus_nancymaae
ENSMUSG00000032212	Sltm	99	49.199	ENSACLG00000002523	sltm	99	48.910	Astatotilapia_calliptera
ENSMUSG00000032212	Sltm	98	49.905	ENSAMXG00000012409	sltm	56	45.652	Astyanax_mexicanus
ENSMUSG00000032212	Sltm	91	91.685	ENSBTAG00000011319	SLTM	56	91.753	Bos_taurus
ENSMUSG00000032212	Sltm	98	89.774	ENSCJAG00000020395	SLTM	74	91.304	Callithrix_jacchus
ENSMUSG00000032212	Sltm	99	89.143	ENSCAFG00000016586	SLTM	59	90.985	Canis_familiaris
ENSMUSG00000032212	Sltm	98	88.507	ENSCAFG00020011253	SLTM	97	89.189	Canis_lupus_dingo
ENSMUSG00000032212	Sltm	98	89.590	ENSCHIG00000008780	SLTM	59	91.122	Capra_hircus
ENSMUSG00000032212	Sltm	95	90.306	ENSTSYG00000013581	SLTM	56	91.710	Carlito_syrichta
ENSMUSG00000032212	Sltm	92	72.785	ENSCAPG00000013326	SLTM	61	80.073	Cavia_aperea
ENSMUSG00000032212	Sltm	91	90.099	ENSCPOG00000026109	SLTM	67	89.806	Cavia_porcellus
ENSMUSG00000032212	Sltm	98	90.659	ENSCCAG00000022982	SLTM	74	91.304	Cebus_capucinus
ENSMUSG00000032212	Sltm	98	91.150	ENSCATG00000030254	SLTM	74	86.957	Cercocebus_atys
ENSMUSG00000032212	Sltm	91	86.547	ENSCLAG00000007160	SLTM	61	88.083	Chinchilla_lanigera
ENSMUSG00000032212	Sltm	98	91.052	ENSCSAG00000012004	SLTM	60	92.058	Chlorocebus_sabaeus
ENSMUSG00000032212	Sltm	84	87.179	ENSCHOG00000001125	SLTM	52	87.179	Choloepus_hoffmanni
ENSMUSG00000032212	Sltm	98	78.589	ENSCPBG00000006045	SLTM	54	89.773	Chrysemys_picta_bellii
ENSMUSG00000032212	Sltm	95	91.122	ENSCANG00000043731	SLTM	59	92.055	Colobus_angolensis_palliatus
ENSMUSG00000032212	Sltm	98	94.789	ENSCGRG00001022009	Sltm	60	95.122	Cricetulus_griseus_chok1gshd
ENSMUSG00000032212	Sltm	95	94.785	ENSCGRG00000014806	Sltm	59	94.810	Cricetulus_griseus_crigri
ENSMUSG00000032212	Sltm	95	47.600	ENSCSEG00000001618	sltm	59	43.344	Cynoglossus_semilaevis
ENSMUSG00000032212	Sltm	99	51.774	ENSDARG00000052728	sltm	91	62.000	Danio_rerio
ENSMUSG00000032212	Sltm	99	89.041	ENSDNOG00000002975	SLTM	63	90.600	Dasypus_novemcinctus
ENSMUSG00000032212	Sltm	76	90.745	ENSDORG00000007463	Sltm	85	90.766	Dipodomys_ordii
ENSMUSG00000032212	Sltm	86	90.018	ENSETEG00000008003	SLTM	59	89.465	Echinops_telfairi
ENSMUSG00000032212	Sltm	98	90.739	ENSEASG00005006792	SLTM	60	92.545	Equus_asinus_asinus
ENSMUSG00000032212	Sltm	98	90.837	ENSECAG00000011267	SLTM	62	92.707	Equus_caballus
ENSMUSG00000032212	Sltm	86	87.901	ENSEEUG00000000580	SLTM	73	87.901	Erinaceus_europaeus
ENSMUSG00000032212	Sltm	99	48.120	ENSELUG00000013388	sltm	92	47.222	Esox_lucius
ENSMUSG00000032212	Sltm	98	90.757	ENSFCAG00000004826	SLTM	74	91.304	Felis_catus
ENSMUSG00000032212	Sltm	95	75.862	ENSFALG00000012285	SLTM	59	73.846	Ficedula_albicollis
ENSMUSG00000032212	Sltm	95	88.163	ENSFDAG00000018075	SLTM	59	90.328	Fukomys_damarensis
ENSMUSG00000032212	Sltm	70	68.421	ENSFHEG00000014764	sltm	52	43.897	Fundulus_heteroclitus
ENSMUSG00000032212	Sltm	63	75.676	ENSGMOG00000015455	sltm	50	65.957	Gadus_morhua
ENSMUSG00000032212	Sltm	61	78.947	ENSGALG00000052242	-	51	83.051	Gallus_gallus
ENSMUSG00000032212	Sltm	99	48.808	ENSGACG00000015814	sltm	59	46.091	Gasterosteus_aculeatus
ENSMUSG00000032212	Sltm	99	77.635	ENSGAGG00000021279	SLTM	55	85.417	Gopherus_agassizii
ENSMUSG00000032212	Sltm	98	91.249	ENSGGOG00000015866	SLTM	81	89.130	Gorilla_gorilla
ENSMUSG00000032212	Sltm	99	49.010	ENSHBUG00000012461	sltm	99	48.720	Haplochromis_burtoni
ENSMUSG00000032212	Sltm	87	68.519	ENSHGLG00000000785	-	76	85.246	Heterocephalus_glaber_female
ENSMUSG00000032212	Sltm	100	87.246	ENSHGLG00000018512	-	60	89.789	Heterocephalus_glaber_female
ENSMUSG00000032212	Sltm	96	79.193	ENSHGLG00000015426	-	61	84.228	Heterocephalus_glaber_female
ENSMUSG00000032212	Sltm	99	76.453	ENSHGLG00100001757	-	62	84.000	Heterocephalus_glaber_male
ENSMUSG00000032212	Sltm	100	81.625	ENSHGLG00100002674	-	61	87.034	Heterocephalus_glaber_male
ENSMUSG00000032212	Sltm	94	77.070	ENSHGLG00100002576	-	61	76.634	Heterocephalus_glaber_male
ENSMUSG00000032212	Sltm	98	50.000	ENSIPUG00000023201	sltm	54	45.369	Ictalurus_punctatus
ENSMUSG00000032212	Sltm	95	90.204	ENSSTOG00000000584	SLTM	59	91.537	Ictidomys_tridecemlineatus
ENSMUSG00000032212	Sltm	99	86.927	ENSJJAG00000006970	Sltm	59	85.737	Jaculus_jaculus
ENSMUSG00000032212	Sltm	99	46.563	ENSKMAG00000007570	sltm	62	42.161	Kryptolebias_marmoratus
ENSMUSG00000032212	Sltm	98	46.957	ENSLBEG00000025472	sltm	60	46.580	Labrus_bergylta
ENSMUSG00000032212	Sltm	99	63.267	ENSLACG00000005234	SLTM	60	61.146	Latimeria_chalumnae
ENSMUSG00000032212	Sltm	99	55.651	ENSLOCG00000013629	sltm	60	53.883	Lepisosteus_oculatus
ENSMUSG00000032212	Sltm	98	87.217	ENSLAFG00000017922	SLTM	81	91.638	Loxodonta_africana
ENSMUSG00000032212	Sltm	98	91.150	ENSMFAG00000033354	SLTM	74	86.957	Macaca_fascicularis
ENSMUSG00000032212	Sltm	98	91.150	ENSMMUG00000022200	SLTM	92	91.667	Macaca_mulatta
ENSMUSG00000032212	Sltm	98	91.052	ENSMNEG00000025105	SLTM	74	84.783	Macaca_nemestrina
ENSMUSG00000032212	Sltm	98	90.954	ENSMLEG00000043355	SLTM	74	86.957	Mandrillus_leucophaeus
ENSMUSG00000032212	Sltm	99	49.569	ENSMAMG00000021391	sltm	59	43.339	Mastacembelus_armatus
ENSMUSG00000032212	Sltm	99	49.199	ENSMZEG00005013839	sltm	99	48.910	Maylandia_zebra
ENSMUSG00000032212	Sltm	96	72.919	ENSMGAG00000005313	SLTM	60	71.477	Meleagris_gallopavo
ENSMUSG00000032212	Sltm	92	95.341	ENSMAUG00000014391	Sltm	54	100.000	Mesocricetus_auratus
ENSMUSG00000032212	Sltm	98	90.265	ENSMICG00000013069	SLTM	74	91.304	Microcebus_murinus
ENSMUSG00000032212	Sltm	98	94.581	ENSMOCG00000012419	Sltm	60	94.805	Microtus_ochrogaster
ENSMUSG00000032212	Sltm	87	50.000	ENSMODG00000020311	-	95	55.120	Monodelphis_domestica
ENSMUSG00000032212	Sltm	98	78.474	ENSMODG00000008794	-	58	73.430	Monodelphis_domestica
ENSMUSG00000032212	Sltm	99	49.570	ENSMALG00000021474	sltm	59	46.699	Monopterus_albus
ENSMUSG00000032212	Sltm	100	98.933	MGP_CAROLIEiJ_G0032404	Sltm	100	98.933	Mus_caroli
ENSMUSG00000032212	Sltm	100	98.642	MGP_PahariEiJ_G0015268	Sltm	100	98.642	Mus_pahari
ENSMUSG00000032212	Sltm	100	99.515	MGP_SPRETEiJ_G0033542	Sltm	100	99.515	Mus_spretus
ENSMUSG00000032212	Sltm	97	87.167	ENSMPUG00000004229	SLTM	57	88.739	Mustela_putorius_furo
ENSMUSG00000032212	Sltm	95	87.703	ENSMLUG00000000742	SLTM	59	90.155	Myotis_lucifugus
ENSMUSG00000032212	Sltm	100	91.570	ENSNGAG00000012328	Sltm	60	92.208	Nannospalax_galili
ENSMUSG00000032212	Sltm	99	48.173	ENSNBRG00000010183	sltm	91	48.845	Neolamprologus_brichardi
ENSMUSG00000032212	Sltm	98	90.963	ENSNLEG00000011440	SLTM	74	86.957	Nomascus_leucogenys
ENSMUSG00000032212	Sltm	98	70.029	ENSMEUG00000015230	SLTM	60	67.742	Notamacropus_eugenii
ENSMUSG00000032212	Sltm	95	85.888	ENSODEG00000017077	SLTM	59	88.621	Octodon_degus
ENSMUSG00000032212	Sltm	100	48.926	ENSONIG00000005838	sltm	98	49.278	Oreochromis_niloticus
ENSMUSG00000032212	Sltm	73	80.658	ENSOANG00000012311	-	95	80.658	Ornithorhynchus_anatinus
ENSMUSG00000032212	Sltm	89	90.617	ENSOCUG00000003327	SLTM	65	90.894	Oryctolagus_cuniculus
ENSMUSG00000032212	Sltm	98	45.349	ENSORLG00000008161	sltm	99	42.802	Oryzias_latipes
ENSMUSG00000032212	Sltm	98	44.841	ENSORLG00020008903	sltm	99	43.217	Oryzias_latipes_hni
ENSMUSG00000032212	Sltm	98	45.349	ENSORLG00015007103	sltm	99	43.243	Oryzias_latipes_hsok
ENSMUSG00000032212	Sltm	85	56.604	ENSOMEG00000002031	-	64	68.421	Oryzias_melastigma
ENSMUSG00000032212	Sltm	83	47.279	ENSOMEG00000002041	sltm	98	45.928	Oryzias_melastigma
ENSMUSG00000032212	Sltm	98	89.971	ENSOGAG00000011297	SLTM	60	91.248	Otolemur_garnettii
ENSMUSG00000032212	Sltm	100	88.201	ENSOARG00000020844	SLTM	60	89.789	Ovis_aries
ENSMUSG00000032212	Sltm	98	89.381	ENSPPAG00000029308	SLTM	74	89.130	Pan_paniscus
ENSMUSG00000032212	Sltm	98	90.364	ENSPPRG00000012400	SLTM	74	91.304	Panthera_pardus
ENSMUSG00000032212	Sltm	95	90.408	ENSPTIG00000021933	SLTM	56	91.883	Panthera_tigris_altaica
ENSMUSG00000032212	Sltm	98	91.249	ENSPTRG00000007121	SLTM	74	89.130	Pan_troglodytes
ENSMUSG00000032212	Sltm	98	88.911	ENSPANG00000017193	SLTM	74	86.957	Papio_anubis
ENSMUSG00000032212	Sltm	87	71.429	ENSPKIG00000022760	sltm	90	49.258	Paramormyrops_kingsleyae
ENSMUSG00000032212	Sltm	98	76.298	ENSPSIG00000005489	SLTM	60	76.973	Pelodiscus_sinensis
ENSMUSG00000032212	Sltm	58	75.000	ENSPMGG00000006037	sltm	50	72.727	Periophthalmus_magnuspinnatus
ENSMUSG00000032212	Sltm	98	93.609	ENSPEMG00000013263	Sltm	60	94.984	Peromyscus_maniculatus_bairdii
ENSMUSG00000032212	Sltm	76	40.833	ENSPMAG00000008206	sltm	52	42.155	Petromyzon_marinus
ENSMUSG00000032212	Sltm	98	81.311	ENSPCIG00000028356	SLTM	98	80.192	Phascolarctos_cinereus
ENSMUSG00000032212	Sltm	99	45.158	ENSPFOG00000004372	sltm	99	44.488	Poecilia_formosa
ENSMUSG00000032212	Sltm	84	57.692	ENSPLAG00000008000	sltm	99	44.780	Poecilia_latipinna
ENSMUSG00000032212	Sltm	84	57.692	ENSPMEG00000006047	sltm	99	44.270	Poecilia_mexicana
ENSMUSG00000032212	Sltm	99	45.202	ENSPREG00000023236	sltm	99	45.083	Poecilia_reticulata
ENSMUSG00000032212	Sltm	98	89.676	ENSPPYG00000006515	SLTM	60	89.465	Pongo_abelii
ENSMUSG00000032212	Sltm	100	76.522	ENSPCAG00000013482	SLTM	90	78.594	Procavia_capensis
ENSMUSG00000032212	Sltm	98	89.971	ENSPCOG00000010624	SLTM	74	93.478	Propithecus_coquereli
ENSMUSG00000032212	Sltm	98	87.316	ENSPVAG00000015056	SLTM	60	87.196	Pteropus_vampyrus
ENSMUSG00000032212	Sltm	99	49.010	ENSPNYG00000013893	sltm	99	48.720	Pundamilia_nyererei
ENSMUSG00000032212	Sltm	85	64.151	ENSPNAG00000020563	sltm	58	47.738	Pygocentrus_nattereri
ENSMUSG00000032212	Sltm	99	96.217	ENSRNOG00000054446	Sltm	99	96.217	Rattus_norvegicus
ENSMUSG00000032212	Sltm	95	91.122	ENSRBIG00000029226	SLTM	59	92.055	Rhinopithecus_bieti
ENSMUSG00000032212	Sltm	98	91.052	ENSRROG00000045301	SLTM	74	86.957	Rhinopithecus_roxellana
ENSMUSG00000032212	Sltm	98	90.659	ENSSBOG00000018883	SLTM	74	91.304	Saimiri_boliviensis_boliviensis
ENSMUSG00000032212	Sltm	95	80.163	ENSSHAG00000015395	SLTM	58	78.731	Sarcophilus_harrisii
ENSMUSG00000032212	Sltm	60	75.676	ENSSFOG00015024086	-	67	74.138	Scleropages_formosus
ENSMUSG00000032212	Sltm	99	48.417	ENSSMAG00000000355	sltm	60	42.547	Scophthalmus_maximus
ENSMUSG00000032212	Sltm	99	49.715	ENSSDUG00000018134	sltm	60	45.177	Seriola_dumerili
ENSMUSG00000032212	Sltm	99	49.573	ENSSLDG00000013907	sltm	60	44.855	Seriola_lalandi_dorsalis
ENSMUSG00000032212	Sltm	61	86.842	ENSSPUG00000001006	-	55	86.441	Sphenodon_punctatus
ENSMUSG00000032212	Sltm	99	49.628	ENSSPAG00000008130	sltm	61	44.580	Stegastes_partitus
ENSMUSG00000032212	Sltm	98	89.790	ENSSSCG00000004592	SLTM	97	90.590	Sus_scrofa
ENSMUSG00000032212	Sltm	92	74.738	ENSTGUG00000006017	SLTM	58	73.188	Taeniopygia_guttata
ENSMUSG00000032212	Sltm	98	46.384	ENSTNIG00000009334	sltm	60	43.196	Tetraodon_nigroviridis
ENSMUSG00000032212	Sltm	95	84.388	ENSTBEG00000000945	SLTM	59	82.556	Tupaia_belangeri
ENSMUSG00000032212	Sltm	100	89.845	ENSTTRG00000005246	SLTM	60	91.572	Tursiops_truncatus
ENSMUSG00000032212	Sltm	79	90.199	ENSUAMG00000025901	SLTM	50	92.346	Ursus_americanus
ENSMUSG00000032212	Sltm	65	87.500	ENSUAMG00000006773	-	64	89.744	Ursus_americanus
ENSMUSG00000032212	Sltm	96	88.129	ENSUMAG00000023678	SLTM	99	88.545	Ursus_maritimus
ENSMUSG00000032212	Sltm	95	89.195	ENSVPAG00000008606	SLTM	59	91.019	Vicugna_pacos
ENSMUSG00000032212	Sltm	98	89.293	ENSVVUG00000001450	SLTM	65	93.548	Vulpes_vulpes
ENSMUSG00000032212	Sltm	98	58.187	ENSXETG00000010840	sltm	59	56.577	Xenopus_tropicalis
ENSMUSG00000032212	Sltm	99	44.487	ENSXMAG00000014466	sltm	99	44.976	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006357	regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0006915	apoptotic process	-	IEA	Process
GO:0016604	nuclear body	-	ISO	Component
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0050684	regulation of mRNA processing	21873635.	IBA	Process