EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000098613	-	2797	-	ENSMUSP00000096213	482 (aa)	-	E9Q8W9
ENSMUST00000034940	-	2405	-	-	- (aa)	-	-
ENSMUST00000127569	-	5607	XM_006511110	ENSMUSP00000122199	520 (aa)	XP_006511173	Q91W36
ENSMUST00000132255	-	573	-	-	- (aa)	-	-
ENSMUST00000174387	-	1901	XM_011242729	ENSMUSP00000134472	476 (aa)	XP_011241031	G3UZF0
ENSMUST00000139952	-	324	-	-	- (aa)	-	-
ENSMUST00000124694	-	588	-	-	- (aa)	-	-
ENSMUST00000139547	-	3662	-	ENSMUSP00000115620	49 (aa)	-	D6RG67
ENSMUST00000124519	-	664	-	-	- (aa)	-	-
ENSMUST00000154476	-	625	-	-	- (aa)	-	-
ENSMUST00000150840	-	565	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000278	mitotic cell cycle	-	ISO	Process
GO:0000790	nuclear chromatin	-	ISO	Component
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	ISO	Function
GO:0004843	thiol-dependent ubiquitin-specific protease activity	-	ISO	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006281	DNA repair	-	ISO	Process
GO:0006325	chromatin organization	-	IEA	Process
GO:0006508	proteolysis	-	IEA	Process
GO:0006511	ubiquitin-dependent protein catabolic process	-	IEA	Process
GO:0006974	cellular response to DNA damage stimulus	-	IEA	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0008233	peptidase activity	-	IEA	Function
GO:0008234	cysteine-type peptidase activity	-	IEA	Function
GO:0008270	zinc ion binding	-	IEA	Function
GO:0016578	histone deubiquitination	21873635.	IBA	Process
GO:0016578	histone deubiquitination	-	ISO	Process
GO:0016579	protein deubiquitination	-	IEA	Process
GO:0016787	hydrolase activity	-	IEA	Function
GO:0031647	regulation of protein stability	-	ISO	Process
GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	-	IEA	Function
GO:0036464	cytoplasmic ribonucleoprotein granule	-	ISO	Component
GO:0042393	histone binding	-	ISO	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0090543	Flemming body	-	ISO	Component
GO:1990841	promoter-specific chromatin binding	-	ISO	Function