EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000032410 (Gene tree)
Gene ID
24127
Gene Symbol
Xrn1
Alias
Dhm2|mXrn1
Full Name
5'-3' exoribonuclease 1
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
103044 bases
Position
chr9:95954760-96057803
Accession
891964
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000139510XRN_NPF03159.183.8e-9611
ENSMUSP00000140278XRN_NPF03159.182e-9511
ENSMUSP00000034981XRN_NPF03159.182e-9511
ENSMUSP00000140004XRN_NPF03159.181.2e-1211
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27281784Identification of RNA binding Proteins in Macrophages by Interactome CaptureIC & RAW264.72016 Jun 8Liepelt ADOI: 10.1074/mcp.M115.056564
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000187359-3046--- (aa)--
ENSMUST00000034981-5499XM_006511154ENSMUSP000000349811723 (aa)XP_006511217F8VQ87
ENSMUST00000187175-6235--- (aa)--
ENSMUST00000185759-3615--- (aa)--
ENSMUST00000189612-3357--- (aa)--
ENSMUST00000185633-10256XM_006511155ENSMUSP000001402781719 (aa)XP_006511218A0A087WQN7
ENSMUST00000190665-3093-ENSMUSP00000139510969 (aa)-A0A087WNV6
ENSMUST00000189106-357-ENSMUSP0000014000440 (aa)-A0A087WQ18
ENSMUST00000189806-844--- (aa)--
Gene Model
Click here to download ENSMUSG00000032410's gene model file
Pathways
Pathway IDPathway NameSource
mmu03008Ribosome biogenesis in eukaryotesKEGG
mmu03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000032410's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000032410Xrn19066.667ENSMUSG00000027433Xrn27139.060
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000032410Xrn1100100.000ENSG00000114127XRN110098.788Homo_sapiens
ENSMUSG00000032410Xrn110090.000ENSAPOG00000000622xrn19476.891Acanthochromis_polyacanthus
ENSMUSG00000032410Xrn110097.500ENSAMEG00000012538XRN110088.266Ailuropoda_melanoleuca
ENSMUSG00000032410Xrn110087.805ENSACIG00000001057xrn19872.186Amphilophus_citrinellus
ENSMUSG00000032410Xrn110092.500ENSAOCG00000014097xrn19871.292Amphiprion_ocellaris
ENSMUSG00000032410Xrn110092.500ENSAPEG00000006620xrn19172.552Amphiprion_percula
ENSMUSG00000032410Xrn110092.500ENSATEG00000009752xrn110068.072Anabas_testudineus
ENSMUSG00000032410Xrn110097.500ENSAPLG00000004905XRN110073.984Anas_platyrhynchos
ENSMUSG00000032410Xrn110097.500ENSACAG00000004985XRN110071.059Anolis_carolinensis
ENSMUSG00000032410Xrn1100100.000ENSANAG00000029013XRN19993.733Aotus_nancymaae
ENSMUSG00000032410Xrn110090.000ENSACLG00000004806xrn19960.089Astatotilapia_calliptera
ENSMUSG00000032410Xrn110095.000ENSAMXG00000019370xrn19594.175Astyanax_mexicanus
ENSMUSG00000032410Xrn110097.500ENSBTAG00000011524XRN110085.132Bos_taurus
ENSMUSG00000032410Xrn110067.500WBGene00012730xrn-18338.274Caenorhabditis_elegans
ENSMUSG00000032410Xrn1100100.000ENSCJAG00000001872XRN110086.366Callithrix_jacchus
ENSMUSG00000032410Xrn110097.500ENSCAFG00000007783XRN110088.388Canis_familiaris
ENSMUSG00000032410Xrn110097.500ENSCAFG00020009120XRN19992.791Canis_lupus_dingo
ENSMUSG00000032410Xrn1100100.000ENSCHIG00000019192XRN19987.348Capra_hircus
ENSMUSG00000032410Xrn1100100.000ENSTSYG00000002705XRN110086.894Carlito_syrichta
ENSMUSG00000032410Xrn110097.500ENSCAPG00000004604-9975.788Cavia_aperea
ENSMUSG00000032410Xrn153100.000ENSCPOG00000035199-100100.000Cavia_porcellus
ENSMUSG00000032410Xrn1100100.000ENSCCAG00000034800XRN19995.880Cebus_capucinus
ENSMUSG00000032410Xrn1100100.000ENSCATG00000041794XRN110086.944Cercocebus_atys
ENSMUSG00000032410Xrn1100100.000ENSCLAG00000001451XRN19994.929Chinchilla_lanigera
ENSMUSG00000032410Xrn1100100.000ENSCSAG00000011265XRN110086.239Chlorocebus_sabaeus
ENSMUSG00000032410Xrn16098.701ENSCHOG00000013961-6298.701Choloepus_hoffmanni
ENSMUSG00000032410Xrn110085.000ENSCING00000001334-9570.652Ciona_intestinalis
ENSMUSG00000032410Xrn110085.000ENSCSAVG00000008584-9844.796Ciona_savignyi
ENSMUSG00000032410Xrn1100100.000ENSCANG00000037495XRN19995.880Colobus_angolensis_palliatus
ENSMUSG00000032410Xrn1100100.000ENSCGRG00001019411Xrn19998.257Cricetulus_griseus_chok1gshd
ENSMUSG00000032410Xrn1100100.000ENSCGRG00000012464Xrn19998.257Cricetulus_griseus_crigri
ENSMUSG00000032410Xrn110092.500ENSCSEG00000021285xrn19495.192Cynoglossus_semilaevis
ENSMUSG00000032410Xrn110092.500ENSCVAG00000013089xrn19971.869Cyprinodon_variegatus
ENSMUSG00000032410Xrn110092.500ENSDARG00000091652xrn19880.169Danio_rerio
ENSMUSG00000032410Xrn153100.000ENSDNOG00000034202-10098.058Dasypus_novemcinctus
ENSMUSG00000032410Xrn1100100.000ENSDORG00000013833Xrn110085.260Dipodomys_ordii
ENSMUSG00000032410Xrn19568.421FBgn0020261pcm7639.646Drosophila_melanogaster
ENSMUSG00000032410Xrn1100100.000ENSETEG00000003978XRN18896.774Echinops_telfairi
ENSMUSG00000032410Xrn1100100.000ENSEASG00005002687XRN19994.929Equus_asinus_asinus
ENSMUSG00000032410Xrn1100100.000ENSECAG00000008301XRN110085.083Equus_caballus
ENSMUSG00000032410Xrn1100100.000ENSEEUG00000011323XRN19281.134Erinaceus_europaeus
ENSMUSG00000032410Xrn110092.500ENSELUG00000000169xrn110061.258Esox_lucius
ENSMUSG00000032410Xrn110097.500ENSFCAG00000027589XRN19994.286Felis_catus
ENSMUSG00000032410Xrn110095.000ENSFALG00000007021XRN110072.809Ficedula_albicollis
ENSMUSG00000032410Xrn110097.500ENSFDAG00000020494XRN19994.136Fukomys_damarensis
ENSMUSG00000032410Xrn153100.000ENSFHEG00000017255-10095.146Fundulus_heteroclitus
ENSMUSG00000032410Xrn15069.917ENSFHEG00000017356-9969.502Fundulus_heteroclitus
ENSMUSG00000032410Xrn110095.000ENSGMOG00000006396xrn18467.185Gadus_morhua
ENSMUSG00000032410Xrn110095.000ENSGALG00000002706XRN110072.932Gallus_gallus
ENSMUSG00000032410Xrn153100.000ENSGAFG00000006293-10094.175Gambusia_affinis
ENSMUSG00000032410Xrn110092.500ENSGACG00000014328xrn110060.469Gasterosteus_aculeatus
ENSMUSG00000032410Xrn110090.000ENSGAGG00000017535XRN19976.371Gopherus_agassizii
ENSMUSG00000032410Xrn110097.500ENSGGOG00000008047XRN110086.540Gorilla_gorilla
ENSMUSG00000032410Xrn110087.805ENSHBUG00000005908xrn19873.511Haplochromis_burtoni
ENSMUSG00000032410Xrn1100100.000ENSHGLG00000014476XRN110094.421Heterocephalus_glaber_female
ENSMUSG00000032410Xrn1100100.000ENSHGLG00100015130XRN110094.421Heterocephalus_glaber_male
ENSMUSG00000032410Xrn16087.500ENSHCOG00000013992-9096.117Hippocampus_comes
ENSMUSG00000032410Xrn110090.000ENSHCOG00000014062xrn19969.782Hippocampus_comes
ENSMUSG00000032410Xrn110092.500ENSIPUG00000015229xrn19962.514Ictalurus_punctatus
ENSMUSG00000032410Xrn1100100.000ENSSTOG00000013552XRN19995.880Ictidomys_tridecemlineatus
ENSMUSG00000032410Xrn1100100.000ENSJJAG00000010863Xrn19993.955Jaculus_jaculus
ENSMUSG00000032410Xrn110090.000ENSKMAG00000021356xrn19475.738Kryptolebias_marmoratus
ENSMUSG00000032410Xrn110095.000ENSLBEG00000018656xrn19796.117Labrus_bergylta
ENSMUSG00000032410Xrn110097.500ENSLACG00000009020XRN110068.547Latimeria_chalumnae
ENSMUSG00000032410Xrn110095.000ENSLOCG00000007944xrn110064.018Lepisosteus_oculatus
ENSMUSG00000032410Xrn1100100.000ENSLAFG00000015426XRN110093.639Loxodonta_africana
ENSMUSG00000032410Xrn1100100.000ENSMFAG00000032599XRN110087.002Macaca_fascicularis
ENSMUSG00000032410Xrn1100100.000ENSMMUG00000014038XRN110087.002Macaca_mulatta
ENSMUSG00000032410Xrn1100100.000ENSMNEG00000034217XRN110086.828Macaca_nemestrina
ENSMUSG00000032410Xrn1100100.000ENSMLEG00000041349-9995.595Mandrillus_leucophaeus
ENSMUSG00000032410Xrn110090.000ENSMAMG00000013219xrn19477.113Mastacembelus_armatus
ENSMUSG00000032410Xrn110090.000ENSMZEG00005015099xrn19959.922Maylandia_zebra
ENSMUSG00000032410Xrn110095.000ENSMGAG00000006333XRN110072.616Meleagris_gallopavo
ENSMUSG00000032410Xrn153100.000ENSMAUG00000014268-97100.000Mesocricetus_auratus
ENSMUSG00000032410Xrn110097.500ENSMICG00000048948XRN196100.000Microcebus_murinus
ENSMUSG00000032410Xrn1100100.000ENSMOCG00000008665Xrn19996.989Microtus_ochrogaster
ENSMUSG00000032410Xrn15385.714ENSMMOG00000020896-9668.266Mola_mola
ENSMUSG00000032410Xrn110092.500ENSMODG00000021236XRN110077.130Monodelphis_domestica
ENSMUSG00000032410Xrn110090.000ENSMALG00000004098xrn110057.282Monopterus_albus
ENSMUSG00000032410Xrn1100100.000MGP_CAROLIEiJ_G0032535Xrn1100100.000Mus_caroli
ENSMUSG00000032410Xrn1100100.000MGP_PahariEiJ_G0015404Xrn1100100.000Mus_pahari
ENSMUSG00000032410Xrn1100100.000MGP_SPRETEiJ_G0033678Xrn1100100.000Mus_spretus
ENSMUSG00000032410Xrn110097.500ENSMPUG00000012040XRN110086.067Mustela_putorius_furo
ENSMUSG00000032410Xrn1100100.000ENSMLUG00000016885XRN110085.987Myotis_lucifugus
ENSMUSG00000032410Xrn1100100.000ENSNGAG00000023964Xrn110092.427Nannospalax_galili
ENSMUSG00000032410Xrn153100.000ENSNBRG00000001531-9995.146Neolamprologus_brichardi
ENSMUSG00000032410Xrn1100100.000ENSNLEG00000004726XRN110086.713Nomascus_leucogenys
ENSMUSG00000032410Xrn17198.969ENSMEUG00000014473-7399.029Notamacropus_eugenii
ENSMUSG00000032410Xrn110097.500ENSOPRG00000007337-7883.040Ochotona_princeps
ENSMUSG00000032410Xrn153100.000ENSODEG00000008804-100100.000Octodon_degus
ENSMUSG00000032410Xrn110090.000ENSONIG00000016673xrn19963.919Oreochromis_niloticus
ENSMUSG00000032410Xrn18586.290ENSOANG00000006735XRN110074.594Ornithorhynchus_anatinus
ENSMUSG00000032410Xrn110097.500ENSOCUG00000001861XRN110086.353Oryctolagus_cuniculus
ENSMUSG00000032410Xrn110092.500ENSORLG00000013005xrn110060.216Oryzias_latipes
ENSMUSG00000032410Xrn110092.500ENSORLG00020005559xrn19572.414Oryzias_latipes_hni
ENSMUSG00000032410Xrn110092.500ENSORLG00015022523xrn18972.231Oryzias_latipes_hsok
ENSMUSG00000032410Xrn110092.500ENSOMEG00000015397xrn110072.942Oryzias_melastigma
ENSMUSG00000032410Xrn1100100.000ENSOGAG00000000170XRN110083.142Otolemur_garnettii
ENSMUSG00000032410Xrn1100100.000ENSOARG00000006343XRN19987.184Ovis_aries
ENSMUSG00000032410Xrn110097.500ENSPPAG00000010180XRN110086.416Pan_paniscus
ENSMUSG00000032410Xrn110097.500ENSPPRG00000007125XRN110086.316Panthera_pardus
ENSMUSG00000032410Xrn110097.500ENSPTIG00000021081XRN110086.259Panthera_tigris_altaica
ENSMUSG00000032410Xrn110097.500ENSPTRG00000015482XRN110086.532Pan_troglodytes
ENSMUSG00000032410Xrn1100100.000ENSPANG00000010638XRN110086.886Papio_anubis
ENSMUSG00000032410Xrn153100.000ENSPKIG00000011903-7996.117Paramormyrops_kingsleyae
ENSMUSG00000032410Xrn110095.000ENSPSIG00000018050XRN110074.629Pelodiscus_sinensis
ENSMUSG00000032410Xrn110095.000ENSPMGG00000002648xrn19878.022Periophthalmus_magnuspinnatus
ENSMUSG00000032410Xrn1100100.000ENSPEMG00000020610Xrn19997.464Peromyscus_maniculatus_bairdii
ENSMUSG00000032410Xrn110097.500ENSPMAG00000002975xrn19178.161Petromyzon_marinus
ENSMUSG00000032410Xrn110092.500ENSPCIG00000028735XRN19988.273Phascolarctos_cinereus
ENSMUSG00000032410Xrn110090.000ENSPFOG00000013932xrn19763.421Poecilia_formosa
ENSMUSG00000032410Xrn110090.000ENSPLAG00000021653xrn19763.395Poecilia_latipinna
ENSMUSG00000032410Xrn110090.000ENSPMEG00000003076xrn19563.410Poecilia_mexicana
ENSMUSG00000032410Xrn110090.000ENSPREG00000021147xrn110060.604Poecilia_reticulata
ENSMUSG00000032410Xrn1100100.000ENSPPYG00000014172XRN110085.837Pongo_abelii
ENSMUSG00000032410Xrn110095.000ENSPCAG00000005638XRN19679.274Procavia_capensis
ENSMUSG00000032410Xrn1100100.000ENSPCOG00000013089XRN19995.246Propithecus_coquereli
ENSMUSG00000032410Xrn110097.500ENSPVAG00000016265XRN19689.775Pteropus_vampyrus
ENSMUSG00000032410Xrn110090.000ENSPNYG00000010570xrn19871.201Pundamilia_nyererei
ENSMUSG00000032410Xrn110095.000ENSPNAG00000023531xrn19960.922Pygocentrus_nattereri
ENSMUSG00000032410Xrn1100100.000ENSRNOG00000042951Xrn110094.036Rattus_norvegicus
ENSMUSG00000032410Xrn1100100.000ENSRBIG00000041227XRN110086.251Rhinopithecus_bieti
ENSMUSG00000032410Xrn1100100.000ENSRROG00000033764-100100.000Rhinopithecus_roxellana
ENSMUSG00000032410Xrn110070.000YGL173CXRN18134.041Saccharomyces_cerevisiae
ENSMUSG00000032410Xrn1100100.000ENSSBOG00000029561XRN110086.424Saimiri_boliviensis_boliviensis
ENSMUSG00000032410Xrn110092.500ENSSHAG00000016207XRN110077.979Sarcophilus_harrisii
ENSMUSG00000032410Xrn110092.500ENSSFOG00015024211xrn110061.609Scleropages_formosus
ENSMUSG00000032410Xrn110095.000ENSSMAG00000016534xrn110067.654Scophthalmus_maximus
ENSMUSG00000032410Xrn110092.500ENSSDUG00000010306xrn19772.231Seriola_dumerili
ENSMUSG00000032410Xrn110092.500ENSSLDG00000021543xrn110070.310Seriola_lalandi_dorsalis
ENSMUSG00000032410Xrn110097.500ENSSARG00000007741-8182.955Sorex_araneus
ENSMUSG00000032410Xrn153100.000ENSSPUG00000010754-10096.117Sphenodon_punctatus
ENSMUSG00000032410Xrn18860.526ENSSPAG00000009856-9676.970Stegastes_partitus
ENSMUSG00000032410Xrn110097.500ENSTGUG00000008498XRN110074.264Taeniopygia_guttata
ENSMUSG00000032410Xrn110090.000ENSTRUG00000004895xrn19775.579Takifugu_rubripes
ENSMUSG00000032410Xrn110087.805ENSTNIG00000017615xrn19767.917Tetraodon_nigroviridis
ENSMUSG00000032410Xrn110097.500ENSTBEG00000003256XRN18985.965Tupaia_belangeri
ENSMUSG00000032410Xrn1100100.000ENSTTRG00000012914XRN110081.641Tursiops_truncatus
ENSMUSG00000032410Xrn110097.500ENSUAMG00000001608XRN19991.727Ursus_americanus
ENSMUSG00000032410Xrn110097.500ENSUMAG00000013625XRN110088.915Ursus_maritimus
ENSMUSG00000032410Xrn1100100.000ENSVPAG00000004690XRN110082.798Vicugna_pacos
ENSMUSG00000032410Xrn110097.500ENSVVUG00000024461XRN19995.246Vulpes_vulpes
ENSMUSG00000032410Xrn110095.000ENSXETG00000000619xrn19988.542Xenopus_tropicalis
ENSMUSG00000032410Xrn110090.000ENSXCOG00000007917xrn19871.649Xiphophorus_couchianus
ENSMUSG00000032410Xrn110090.000ENSXMAG00000018320xrn110068.569Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000723telomere maintenance9049243.ICProcess
GO:0000723telomere maintenance9218715.NASProcess
GO:0000932P-body18625844.IDAComponent
GO:0000932P-body-ISOComponent
GO:0000956nuclear-transcribed mRNA catabolic process-ISOProcess
GO:0002151G-quadruplex RNA binding9049243.IDAFunction
GO:0003676nucleic acid binding-IEAFunction
GO:0003677DNA binding-IEAFunction
GO:0003723RNA binding-IEAFunction
GO:0004518nuclease activity-IEAFunction
GO:0004527exonuclease activity-IEAFunction
GO:00045345'-3' exoribonuclease activity9049243.IDAFunction
GO:00045345'-3' exoribonuclease activity-ISOFunction
GO:00045345'-3' exoribonuclease activity9218715.TASFunction
GO:0005515protein binding29033321.IPIFunction
GO:0005737cytoplasm9049243.IDAComponent
GO:0005829cytosol-ISOComponent
GO:0005886plasma membrane-ISOComponent
GO:0006396RNA processing9049243.TASProcess
GO:0007569cell aging9218715.NASProcess
GO:00084095'-3' exonuclease activity-IEAFunction
GO:0016075rRNA catabolic process-ISOProcess
GO:0016787hydrolase activity-IEAFunction
GO:0017148negative regulation of translation-ISOProcess
GO:0030425dendrite-ISOComponent
GO:0043025neuronal cell body-ISOComponent
GO:0045202synapse-ISOComponent
GO:0051321meiotic cell cycle9218715.NASProcess
GO:0051880G-quadruplex DNA binding9049243.IDAFunction
GO:0071028nuclear mRNA surveillance-ISOProcess
GO:0071044histone mRNA catabolic process-ISOProcess
GO:0090503RNA phosphodiester bond hydrolysis, exonucleolytic9049243.IDAProcess

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