EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000163190	-	4322	XM_017313163	ENSMUSP00000143171	1441 (aa)	XP_017168652	A0A0G2JFH2
ENSMUST00000165876	-	5573	XM_017313164	ENSMUSP00000132662	1124 (aa)	XP_017168653	P27546
ENSMUST00000198511	-	825	-	ENSMUSP00000142558	220 (aa)	-	A0A0G2JDY5
ENSMUST00000169851	-	3446	XM_006511967	ENSMUSP00000131660	99 (aa)	XP_006512030	Q78TF3
ENSMUST00000199498	-	4055	XM_006511962	ENSMUSP00000142439	902 (aa)	XP_006512025	A0A0G2JDN7
ENSMUST00000196729	-	442	-	-	- (aa)	-	-
ENSMUST00000196763	-	740	-	-	- (aa)	-	-
ENSMUST00000163979	-	3320	XM_006511960	ENSMUSP00000129362	414 (aa)	XP_006512023	A0A140T8T5
ENSMUST00000197289	-	940	-	-	- (aa)	-	-
ENSMUST00000199161	-	693	-	ENSMUSP00000143205	207 (aa)	-	A0A0G2JFK3
ENSMUST00000198185	-	829	-	-	- (aa)	-	-
ENSMUST00000035055	-	6091	XM_006511955	ENSMUSP00000035055	1125 (aa)	XP_006512018	P27546
ENSMUST00000164930	-	4925	XM_017313162	ENSMUSP00000131285	933 (aa)	XP_017168651	E9PZ43
ENSMUST00000199461	-	1176	-	ENSMUSP00000143296	276 (aa)	-	A0A0G2JFT4
ENSMUST00000200480	-	758	-	ENSMUSP00000142501	116 (aa)	-	A0A0G2JDU1
ENSMUST00000199548	-	1383	-	ENSMUSP00000143408	290 (aa)	-	A0A0G2JG35
ENSMUST00000199985	-	754	-	ENSMUSP00000142640	81 (aa)	-	A0A0G2JE57

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000032479	Map4	99	92.174	ENSG00000047849	MAP4	97	79.730	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000226	microtubule cytoskeleton organization	21873635.	IBA	Process
GO:0000226	microtubule cytoskeleton organization	10542369.	IDA	Process
GO:0005515	protein binding	26487268.	IPI	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005874	microtubule	-	IEA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0005930	axoneme	-	ISO	Component
GO:0007052	mitotic spindle organization	21822276.	IDA	Process
GO:0007052	mitotic spindle organization	21822276.	ISO	Process
GO:0008017	microtubule binding	21873635.	IBA	Function
GO:0008017	microtubule binding	21822276.	IDA	Function
GO:0014069	postsynaptic density	17114649.	IDA	Component
GO:0015630	microtubule cytoskeleton	-	ISO	Component
GO:0015631	tubulin binding	-	IEA	Function
GO:0030424	axon	-	ISO	Component
GO:0031175	neuron projection development	21873635.	IBA	Process
GO:0043005	neuron projection	21873635.	IBA	Component
GO:0051012	microtubule sliding	21822276.	IDA	Process
GO:0051012	microtubule sliding	21822276.	ISO	Process
GO:0051294	establishment of spindle orientation	21822276.	IDA	Process
GO:0051294	establishment of spindle orientation	21822276.	ISO	Process
GO:0051301	cell division	21822276.	ISO	Process
GO:0072686	mitotic spindle	21822276.	ISO	Component
GO:1902856	negative regulation of non-motile cilium assembly	-	ISO	Process