EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000032560 (Gene tree)
Gene ID: 235567
Gene Symbol: Dnajc13
Alias: D030002L11Rik|LOC382100|Rme8
Full Name: DnaJ heat shock protein family (Hsp40) member C13
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 111649
Position: chr9: 104151282-104262930
Accession: 2676368
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000190600	-	526	-	-	- (aa)	-	-
ENSMUST00000185503	-	1222	-	ENSMUSP00000140571	174 (aa)	-	A0A087WRC9
ENSMUST00000191199	-	615	-	-	- (aa)	-	-
ENSMUST00000035170	-	8012	XM_011242878	ENSMUSP00000035170	2243 (aa)	XP_011241180	G3X922
ENSMUST00000190926	-	453	-	-	- (aa)	-	-
ENSMUST00000188592	-	734	-	-	- (aa)	-	-
ENSMUST00000188885	-	492	-	ENSMUSP00000141056	59 (aa)	-	A0A087WSI0
ENSMUST00000189299	-	568	-	-	- (aa)	-	-
ENSMUST00000186788	-	6747	XM_006511708	ENSMUSP00000139804	2248 (aa)	XP_006511771	D4AFX7
ENSMUST00000188998	-	614	-	ENSMUSP00000140867	184 (aa)	-	A0A087WS25
ENSMUST00000189813	-	601	-	-	- (aa)	-	-
ENSMUST00000189103	-	641	-	-	- (aa)	-	-
ENSMUST00000188139	-	668	-	ENSMUSP00000150468	96 (aa)	-	A0A1L1STR9
ENSMUST00000188425	-	3237	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000032560's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000032560's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000032560	Dnajc13	99	98.266	ENSG00000138246	DNAJC13	100	98.266	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0005829	cytosol	-	ISO	Component
GO:0006898	receptor-mediated endocytosis	21873635.	IBA	Process
GO:0007032	endosome organization	-	ISO	Process
GO:0010008	endosome membrane	21873635.	IBA	Component
GO:0010008	endosome membrane	-	ISO	Component
GO:0031901	early endosome membrane	-	ISO	Component
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0071203	WASH complex	-	ISO	Component
GO:1902954	regulation of early endosome to recycling endosome transport	-	ISO	Process
GO:2000641	regulation of early endosome to late endosome transport	-	ISO	Process