EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000032621 (Gene tree)
Gene ID: 218543
Gene Symbol: Srek1
Alias: AL118220|SRrp508|SRrp86|Sfrs12
Full Name: splicing regulatory glutamine/lysine-rich protein 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 35261 bases
Position: chr13:103739348-103774608
Accession: 2145245
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000074196	RRM_1	PF00076.22	1.7e-21	1	2
ENSMUSP00000074196	RRM_1	PF00076.22	1.7e-21	2	2
ENSMUSP00000148039	RRM_1	PF00076.22	3.6e-13	1	1
ENSMUSP00000147737	RRM_1	PF00076.22	7.3e-13	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000209961	-	724	-	-	- (aa)	-	-
ENSMUST00000210489	-	6330	XM_006517607	ENSMUSP00000147737	494 (aa)	XP_006517670	Q8BZX4
ENSMUST00000211030	-	690	-	-	- (aa)	-	-
ENSMUST00000211322	-	1655	-	ENSMUSP00000148039	314 (aa)	-	A0A1B0GSR3
ENSMUST00000210836	-	2085	-	ENSMUSP00000147868	198 (aa)	-	A0A1B0GSB4
ENSMUST00000211139	-	641	-	-	- (aa)	-	-
ENSMUST00000210643	-	1392	-	-	- (aa)	-	-
ENSMUST00000210269	-	619	-	-	- (aa)	-	-
ENSMUST00000074616	-	3934	XM_006517606	ENSMUSP00000074196	610 (aa)	XP_006517669	Q8BZX4
ENSMUST00000211491	-	1567	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000032621's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000032621's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000032621	Srek1	91	75.556	ENSAPEG00000002239	-	51	75.000	Amphiprion_percula
ENSMUSG00000032621	Srek1	73	41.781	WBGene00004704	rsp-7	71	32.213	Caenorhabditis_elegans
ENSMUSG00000032621	Srek1	92	95.628	ENSCHIG00000013372	-	70	64.856	Capra_hircus
ENSMUSG00000032621	Srek1	92	95.604	ENSCSAG00000015908	-	90	94.444	Chlorocebus_sabaeus
ENSMUSG00000032621	Srek1	92	81.319	ENSLACG00000005011	-	98	60.139	Latimeria_chalumnae
ENSMUSG00000032621	Srek1	100	99.363	MGP_CAROLIEiJ_G0018855	Srek1	100	97.976	Mus_caroli
ENSMUSG00000032621	Srek1	100	99.682	MGP_SPRETEiJ_G0019734	Srek1	100	99.393	Mus_spretus
ENSMUSG00000032621	Srek1	96	82.724	ENSOGAG00000030859	-	99	80.422	Otolemur_garnettii
ENSMUSG00000032621	Srek1	92	92.857	ENSPSIG00000012187	-	90	89.212	Pelodiscus_sinensis
ENSMUSG00000032621	Srek1	91	76.111	ENSPFOG00000001959	-	61	80.212	Poecilia_formosa
ENSMUSG00000032621	Srek1	100	98.726	ENSRNOG00000032735	Srek1	97	95.286	Rattus_norvegicus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	-	IEA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008150	biological_process	-	ND	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0016607	nuclear speck	-	ISO	Component