EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000142755	-	638	-	-	- (aa)	-	-
ENSMUST00000139775	-	532	-	-	- (aa)	-	-
ENSMUST00000035269	-	2874	-	ENSMUSP00000047564	842 (aa)	-	Q9WUB3
ENSMUST00000113483	-	2583	-	ENSMUSP00000109111	754 (aa)	-	E9PUM3

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu00500	Starch and sucrose metabolism	KEGG
mmu01100	Metabolic pathways	KEGG
mmu04217	Necroptosis	KEGG
mmu04910	Insulin signaling pathway	KEGG
mmu04922	Glucagon signaling pathway	KEGG
mmu04931	Insulin resistance	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000032648	Pygm	99	78.313	FBgn0004507	GlyP	99	73.722	Drosophila_melanogaster
ENSMUSG00000032648	Pygm	99	83.671	ENSG00000100994	PYGB	99	83.671	Homo_sapiens
ENSMUSG00000032648	Pygm	99	81.928	ENSG00000100504	PYGL	99	80.357	Homo_sapiens
ENSMUSG00000032648	Pygm	99	84.267	ENSMUSG00000033059	Pygb	99	84.267	Mus_musculus
ENSMUSG00000032648	Pygm	95	48.642	YPR160W		93	48.642	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0001666	response to hypoxia	-	ISO	Process
GO:0003824	catalytic activity	-	IEA	Function
GO:0004645	phosphorylase activity	-	IEA	Function
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005975	carbohydrate metabolic process	-	IEA	Process
GO:0005977	glycogen metabolic process	-	ISO	Process
GO:0005980	glycogen catabolic process	21873635.	IBA	Process
GO:0005980	glycogen catabolic process	15282316.17689562.	IDA	Process
GO:0005980	glycogen catabolic process	17689562.	IMP	Process
GO:0005980	glycogen catabolic process	-	ISO	Process
GO:0006874	cellular calcium ion homeostasis	-	ISO	Process
GO:0008144	drug binding	-	ISO	Function
GO:0008152	metabolic process	-	IEA	Process
GO:0008184	glycogen phosphorylase activity	21873635.	IBA	Function
GO:0008184	glycogen phosphorylase activity	11785984.15282316.17689562.	IDA	Function
GO:0008184	glycogen phosphorylase activity	17689562.	IMP	Function
GO:0008184	glycogen phosphorylase activity	-	ISO	Function
GO:0010033	response to organic substance	-	ISO	Process
GO:0016208	AMP binding	-	ISO	Function
GO:0016529	sarcoplasmic reticulum	-	ISO	Component
GO:0016740	transferase activity	-	IEA	Function
GO:0016757	transferase activity, transferring glycosyl groups	-	IEA	Function
GO:0030018	Z disc	-	ISO	Component
GO:0030170	pyridoxal phosphate binding	21873635.	IBA	Function
GO:0030170	pyridoxal phosphate binding	-	ISO	Function
GO:0030246	carbohydrate binding	-	ISO	Function
GO:0051591	response to cAMP	-	ISO	Process