EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000154777	-	742	-	-	- (aa)	-	-
ENSMUST00000134566	-	2492	-	ENSMUSP00000117952	568 (aa)	-	E9PUC2
ENSMUST00000135642	-	502	-	ENSMUSP00000116576	141 (aa)	-	D3Z4I4
ENSMUST00000142704	-	2976	-	ENSMUSP00000121695	720 (aa)	-	Q9CZW4
ENSMUST00000148608	-	643	-	-	- (aa)	-	-
ENSMUST00000035779	-	3950	-	ENSMUSP00000045291	720 (aa)	-	Q9CZW4
ENSMUST00000132997	-	627	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu00061	Fatty acid biosynthesis	KEGG
mmu00071	Fatty acid degradation	KEGG
mmu01100	Metabolic pathways	KEGG
mmu01212	Fatty acid metabolism	KEGG
mmu03320	PPAR signaling pathway	KEGG
mmu04146	Peroxisome	KEGG
mmu04216	Ferroptosis	KEGG
mmu04714	Thermogenesis	KEGG
mmu04920	Adipocytokine signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000032883	Acsl3	100	94.190	ENSG00000123983	ACSL3	100	92.917	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0003824	catalytic activity	-	IEA	Function
GO:0004467	long-chain fatty acid-CoA ligase activity	-	ISO	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005739	mitochondrion	-	IEA	Component
GO:0005741	mitochondrial outer membrane	-	IEA	Component
GO:0005777	peroxisome	-	IEA	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0005794	Golgi apparatus	-	ISO	Component
GO:0005811	lipid droplet	-	ISO	Component
GO:0006629	lipid metabolic process	-	IEA	Process
GO:0006631	fatty acid metabolic process	-	IEA	Process
GO:0006633	fatty acid biosynthetic process	-	ISO	Process
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0016874	ligase activity	-	IEA	Function
GO:0019901	protein kinase binding	-	ISO	Function
GO:0019904	protein domain specific binding	-	ISO	Function
GO:0034379	very-low-density lipoprotein particle assembly	-	ISO	Process
GO:0042998	positive regulation of Golgi to plasma membrane protein transport	-	ISO	Process
GO:0043231	intracellular membrane-bounded organelle	-	IEA	Component
GO:0044539	long-chain fatty acid import	-	ISO	Process
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component
GO:0051047	positive regulation of secretion	-	ISO	Process
GO:0102391	decanoate-CoA ligase activity	-	IEA	Function
GO:2001247	positive regulation of phosphatidylcholine biosynthetic process	-	ISO	Process