EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000032939 (Gene tree)
Gene ID: 71805
Gene Symbol: Nup93
Alias: 2410008G02Rik
Full Name: nucleoporin 93
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 102664
Position: chr8: 94214564-94317227
Accession: 1919055
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000079961	-	2707	XM_006531374	ENSMUSP00000078878	819 (aa)	XP_006531437	Q8BJ71
ENSMUST00000212984	-	623	-	-	- (aa)	-	-
ENSMUST00000212062	-	730	-	-	- (aa)	-	-
ENSMUST00000212039	-	647	-	-	- (aa)	-	-
ENSMUST00000211822	-	2674	XM_006531375	ENSMUSP00000148458	699 (aa)	XP_006531439	A0A1D5RLQ0
ENSMUST00000212167	-	504	-	ENSMUSP00000148672	18 (aa)	-	A0A1D5RM86
ENSMUST00000212824	-	2928	-	ENSMUSP00000148700	819 (aa)	-	Q8BJ71
ENSMUST00000109547	-	2847	-	ENSMUSP00000105174	819 (aa)	-	Q8BJ71

Gene Model

Click here to download ENSMUSG00000032939's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000032939's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000032939	Nup93	99	36.121	FBgn0038274	Nup93-2	99	36.121	Drosophila_melanogaster
ENSMUSG00000032939	Nup93	100	100.000	ENSG00000102900	NUP93	100	100.000	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	IEA	Component
GO:0005635	nuclear envelope	-	ISO	Component
GO:0005643	nuclear pore	21873635.	IBA	Component
GO:0005643	nuclear pore	-	ISO	Component
GO:0006606	protein import into nucleus	21873635.	IBA	Process
GO:0006998	nuclear envelope organization	-	ISO	Process
GO:0015031	protein transport	-	IEA	Process
GO:0016020	membrane	-	IEA	Component
GO:0016973	poly(A)+ mRNA export from nucleus	21873635.	IBA	Process
GO:0017056	structural constituent of nuclear pore	21873635.	IBA	Function
GO:0017056	structural constituent of nuclear pore	-	ISO	Function
GO:0031965	nuclear membrane	-	ISO	Component
GO:0034399	nuclear periphery	-	ISO	Component
GO:0051028	mRNA transport	-	IEA	Process
GO:0051292	nuclear pore complex assembly	-	ISO	Process
GO:0060391	positive regulation of SMAD protein signal transduction	26878725.	IDA	Process
GO:0060391	positive regulation of SMAD protein signal transduction	-	ISO	Process
GO:0060395	SMAD protein signal transduction	26878725.	IDA	Process
GO:0060395	SMAD protein signal transduction	-	ISO	Process
GO:0072001	renal system development	-	ISO	Process