EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000033060 (Gene tree)
Gene ID: 380928
Gene Symbol: Lmo7
Alias: FBXO20|LOC380928
Full Name: LIM domain only 7
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 204754
Position: chr14: 101729957-101934710
Accession: 1353586
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000100337	-	6092	XM_006519176	ENSMUSP00000097910	1699 (aa)	XP_006519239	E9PYF4
ENSMUST00000159769	-	372	-	-	- (aa)	-	-
ENSMUST00000159154	-	3330	-	-	- (aa)	-	-
ENSMUST00000159850	-	851	-	-	- (aa)	-	-
ENSMUST00000161668	-	767	-	-	- (aa)	-	-
ENSMUST00000160038	-	597	-	-	- (aa)	-	-
ENSMUST00000160876	-	664	-	-	- (aa)	-	-
ENSMUST00000159948	-	2692	-	-	- (aa)	-	-
ENSMUST00000162091	-	2207	-	-	- (aa)	-	-
ENSMUST00000159314	-	5774	XM_006519180	ENSMUSP00000124349	1453 (aa)	XP_006519243	E9PYI7
ENSMUST00000159026	-	1986	-	ENSMUSP00000124605	471 (aa)	-	Q3UPW3
ENSMUST00000159258	-	6006	-	ENSMUSP00000125465	422 (aa)	-	E0CZD8
ENSMUST00000159597	-	5423	-	ENSMUSP00000123706	1604 (aa)	-	F6VG99
ENSMUST00000159797	-	1842	-	-	- (aa)	-	-
ENSMUST00000159812	-	481	-	-	- (aa)	-	-
ENSMUST00000159806	-	3845	XM_006519191	ENSMUSP00000124300	1189 (aa)	XP_006519254	F6TFN2

Gene Model

Click here to download ENSMUSG00000033060's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04520	Adherens junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000033060's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000033060	Lmo7	100	87.686	ENSG00000136153	LMO7	100	93.056	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	ISO	Component
GO:0005635	nuclear envelope	21525034.	IDA	Component
GO:0005635	nuclear envelope	-	ISO	Component
GO:0005654	nucleoplasm	21525034.	IDA	Component
GO:0005737	cytoplasm	21525034.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005886	plasma membrane	21525034.	IDA	Component
GO:0005913	cell-cell adherens junction	-	ISO	Component
GO:0008022	protein C-terminus binding	-	ISO	Function
GO:0009986	cell surface	-	ISO	Component
GO:0016324	apical plasma membrane	19215226.	IDA	Component
GO:0016324	apical plasma membrane	-	ISO	Component
GO:0042805	actinin binding	-	ISO	Function
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0098609	cell-cell adhesion	-	ISO	Process