EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000033228 (Gene tree)
Gene ID: 72193
Gene Symbol: Scaf11
Alias: 1110061H03Rik|2610510E10Rik|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip
Full Name: SR-related CTD-associated factor 11
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 49145
Position: chr15: 96411699-96460843
Accession: 1919443
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000047835	-	5766	XM_006521430	ENSMUSP00000044898	1456 (aa)	XP_006521493	E9PZM7
ENSMUST00000227069	-	4829	-	ENSMUSP00000154321	1389 (aa)	-	A0A2I3BQU5
ENSMUST00000228535	-	696	-	ENSMUSP00000154368	232 (aa)	-	A0A2I3BQX1
ENSMUST00000228072	-	4519	-	ENSMUSP00000154674	476 (aa)	-	A0A2I3BRQ7
ENSMUST00000227133	-	2599	-	-	- (aa)	-	-
ENSMUST00000228260	-	796	-	ENSMUSP00000154059	84 (aa)	-	A0A2I3BQ68

Gene Model

Click here to download ENSMUSG00000033228's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000033228's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000033228	Scaf11	99	79.713	ENSG00000139218	SCAF11	90	86.131	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000245	spliceosomal complex assembly	-	ISO	Process
GO:0000375	RNA splicing, via transesterification reactions	-	ISO	Process
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0008380	RNA splicing	-	ISO	Process
GO:0016604	nuclear body	-	ISO	Component