EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000033285 (Gene tree)
Gene ID: 269470
Gene Symbol: Wdr3
Alias: D030020G18Rik
Full Name: WD repeat domain 3
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 24228 bases
Position: chr3:100138180-100162407
Accession: 2443143
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000060613	Utp12	PF04003.12	2.7e-21	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000146989	-	4002	-	-	- (aa)	-	-
ENSMUST00000052120	-	3432	XM_006501542	ENSMUSP00000060613	942 (aa)	-	Q8BHB4
ENSMUST00000125059	-	591	-	ENSMUSP00000135731	76 (aa)	-	H3BLC1
ENSMUST00000197602	-	524	-	ENSMUSP00000143010	61 (aa)	-	H3BJD8
ENSMUST00000129319	-	291	-	-	- (aa)	-	-
ENSMUST00000135812	-	398	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000033285's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000033285's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000033285	Wdr3	61	32.716	ENSMUSG00000023345	Poc1a	95	32.117

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000033285	Wdr3	100	90.890	ENSG00000065183	WDR3	100	90.890	Homo_sapiens
ENSMUSG00000033285	Wdr3	95	69.799	ENSAPOG00000005975	wdr3	99	69.799	Acanthochromis_polyacanthus
ENSMUSG00000033285	Wdr3	100	90.360	ENSAMEG00000004339	WDR3	100	90.360	Ailuropoda_melanoleuca
ENSMUSG00000033285	Wdr3	99	62.633	ENSACIG00000006993	wdr3	99	62.633	Amphilophus_citrinellus
ENSMUSG00000033285	Wdr3	99	68.215	ENSAOCG00000023966	wdr3	99	70.022	Amphiprion_ocellaris
ENSMUSG00000033285	Wdr3	99	69.068	ENSAPEG00000018223	wdr3	99	69.703	Amphiprion_percula
ENSMUSG00000033285	Wdr3	99	69.068	ENSATEG00000000703	wdr3	99	69.386	Anabas_testudineus
ENSMUSG00000033285	Wdr3	100	72.718	ENSACAG00000008210	WDR3	100	72.718	Anolis_carolinensis
ENSMUSG00000033285	Wdr3	100	90.572	ENSANAG00000033348	WDR3	100	90.572	Aotus_nancymaae
ENSMUSG00000033285	Wdr3	98	69.697	ENSACLG00000016975	wdr3	99	68.962	Astatotilapia_calliptera
ENSMUSG00000033285	Wdr3	100	69.556	ENSAMXG00000005755	wdr3	100	68.922	Astyanax_mexicanus
ENSMUSG00000033285	Wdr3	100	91.208	ENSBTAG00000019937	WDR3	100	91.208	Bos_taurus
ENSMUSG00000033285	Wdr3	99	34.515	WBGene00017435	F13H8.2	98	34.258	Caenorhabditis_elegans
ENSMUSG00000033285	Wdr3	100	89.831	ENSCJAG00000005749	WDR3	100	89.831	Callithrix_jacchus
ENSMUSG00000033285	Wdr3	100	89.619	ENSCAFG00000009916	WDR3	100	89.619	Canis_familiaris
ENSMUSG00000033285	Wdr3	87	89.756	ENSCAFG00020020610	WDR3	98	89.853	Canis_lupus_dingo
ENSMUSG00000033285	Wdr3	100	90.890	ENSCHIG00000010490	WDR3	100	90.890	Capra_hircus
ENSMUSG00000033285	Wdr3	100	89.735	ENSTSYG00000002158	WDR3	100	89.735	Carlito_syrichta
ENSMUSG00000033285	Wdr3	100	72.698	ENSCAPG00000015805	WDR3	100	72.698	Cavia_aperea
ENSMUSG00000033285	Wdr3	100	90.678	ENSCPOG00000011305	WDR3	100	90.678	Cavia_porcellus
ENSMUSG00000033285	Wdr3	100	89.820	ENSCCAG00000037237	WDR3	100	89.820	Cebus_capucinus
ENSMUSG00000033285	Wdr3	100	90.996	ENSCATG00000037200	WDR3	100	90.996	Cercocebus_atys
ENSMUSG00000033285	Wdr3	100	90.466	ENSCLAG00000010657	WDR3	100	90.466	Chinchilla_lanigera
ENSMUSG00000033285	Wdr3	100	90.890	ENSCSAG00000001705	WDR3	100	90.890	Chlorocebus_sabaeus
ENSMUSG00000033285	Wdr3	83	91.429	ENSCHOG00000006428	WDR3	86	91.429	Choloepus_hoffmanni
ENSMUSG00000033285	Wdr3	99	80.234	ENSCPBG00000001426	WDR3	98	81.411	Chrysemys_picta_bellii
ENSMUSG00000033285	Wdr3	100	95.011	ENSCGRG00001019544	Wdr3	100	95.011	Cricetulus_griseus_chok1gshd
ENSMUSG00000033285	Wdr3	87	92.997	ENSCGRG00000001027	Wdr3	91	92.997	Cricetulus_griseus_crigri
ENSMUSG00000033285	Wdr3	99	67.691	ENSCSEG00000009381	wdr3	99	67.797	Cynoglossus_semilaevis
ENSMUSG00000033285	Wdr3	99	65.254	ENSCVAG00000014846	wdr3	99	65.254	Cyprinodon_variegatus
ENSMUSG00000033285	Wdr3	100	69.524	ENSDARG00000011079	wdr3	100	69.630	Danio_rerio
ENSMUSG00000033285	Wdr3	100	89.301	ENSDNOG00000018114	WDR3	100	89.301	Dasypus_novemcinctus
ENSMUSG00000033285	Wdr3	100	89.169	ENSDORG00000011031	Wdr3	100	89.169	Dipodomys_ordii
ENSMUSG00000033285	Wdr3	98	42.660	FBgn0038597	CG8064	98	42.660	Drosophila_melanogaster
ENSMUSG00000033285	Wdr3	100	89.831	ENSEASG00005006393	WDR3	100	89.831	Equus_asinus_asinus
ENSMUSG00000033285	Wdr3	100	89.936	ENSECAG00000006575	WDR3	99	89.936	Equus_caballus
ENSMUSG00000033285	Wdr3	95	89.474	ENSEEUG00000002218	WDR3	100	89.474	Erinaceus_europaeus
ENSMUSG00000033285	Wdr3	100	68.042	ENSELUG00000005997	wdr3	100	68.148	Esox_lucius
ENSMUSG00000033285	Wdr3	100	90.042	ENSFCAG00000003469	WDR3	100	90.042	Felis_catus
ENSMUSG00000033285	Wdr3	99	75.716	ENSFALG00000005089	WDR3	99	75.716	Ficedula_albicollis
ENSMUSG00000033285	Wdr3	100	90.466	ENSFDAG00000016284	WDR3	100	90.466	Fukomys_damarensis
ENSMUSG00000033285	Wdr3	99	67.373	ENSFHEG00000012138	wdr3	99	64.762	Fundulus_heteroclitus
ENSMUSG00000033285	Wdr3	92	63.383	ENSGMOG00000002962	wdr3	100	63.501	Gadus_morhua
ENSMUSG00000033285	Wdr3	100	77.731	ENSGALG00000014791	WDR3	100	78.261	Gallus_gallus
ENSMUSG00000033285	Wdr3	99	68.750	ENSGAFG00000013102	wdr3	99	68.750	Gambusia_affinis
ENSMUSG00000033285	Wdr3	95	63.536	ENSGACG00000008251	wdr3	100	63.653	Gasterosteus_aculeatus
ENSMUSG00000033285	Wdr3	95	81.208	ENSGAGG00000009171	WDR3	96	81.432	Gopherus_agassizii
ENSMUSG00000033285	Wdr3	100	90.890	ENSGGOG00000009982	WDR3	100	90.890	Gorilla_gorilla
ENSMUSG00000033285	Wdr3	98	69.805	ENSHBUG00000004367	wdr3	99	69.068	Haplochromis_burtoni
ENSMUSG00000033285	Wdr3	100	90.148	ENSHGLG00000017936	WDR3	100	90.148	Heterocephalus_glaber_female
ENSMUSG00000033285	Wdr3	100	90.148	ENSHGLG00100008292	WDR3	100	90.148	Heterocephalus_glaber_male
ENSMUSG00000033285	Wdr3	99	62.825	ENSHCOG00000017501	wdr3	97	68.192	Hippocampus_comes
ENSMUSG00000033285	Wdr3	100	68.571	ENSIPUG00000003396	wdr3	100	68.571	Ictalurus_punctatus
ENSMUSG00000033285	Wdr3	100	90.572	ENSSTOG00000003504	WDR3	100	90.572	Ictidomys_tridecemlineatus
ENSMUSG00000033285	Wdr3	100	88.677	ENSJJAG00000013861	Wdr3	100	88.677	Jaculus_jaculus
ENSMUSG00000033285	Wdr3	98	67.892	ENSKMAG00000016004	wdr3	99	69.050	Kryptolebias_marmoratus
ENSMUSG00000033285	Wdr3	99	65.645	ENSLBEG00000013757	wdr3	99	65.645	Labrus_bergylta
ENSMUSG00000033285	Wdr3	98	66.810	ENSLACG00000014259	WDR3	99	66.456	Latimeria_chalumnae
ENSMUSG00000033285	Wdr3	98	68.966	ENSLOCG00000011052	wdr3	99	68.671	Lepisosteus_oculatus
ENSMUSG00000033285	Wdr3	100	88.771	ENSLAFG00000012108	WDR3	100	88.771	Loxodonta_africana
ENSMUSG00000033285	Wdr3	100	90.890	ENSMFAG00000034570	WDR3	100	90.890	Macaca_fascicularis
ENSMUSG00000033285	Wdr3	100	90.890	ENSMMUG00000008513	WDR3	100	90.890	Macaca_mulatta
ENSMUSG00000033285	Wdr3	100	90.890	ENSMNEG00000039555	WDR3	100	90.890	Macaca_nemestrina
ENSMUSG00000033285	Wdr3	100	90.996	ENSMLEG00000035516	WDR3	100	90.996	Mandrillus_leucophaeus
ENSMUSG00000033285	Wdr3	99	66.702	ENSMAMG00000020737	wdr3	99	66.808	Mastacembelus_armatus
ENSMUSG00000033285	Wdr3	98	65.476	ENSMZEG00005019253	wdr3	99	65.720	Maylandia_zebra
ENSMUSG00000033285	Wdr3	99	75.556	ENSMGAG00000014241	WDR3	99	76.250	Meleagris_gallopavo
ENSMUSG00000033285	Wdr3	100	95.329	ENSMAUG00000002574	Wdr3	100	95.329	Mesocricetus_auratus
ENSMUSG00000033285	Wdr3	100	89.831	ENSMICG00000001783	WDR3	100	89.831	Microcebus_murinus
ENSMUSG00000033285	Wdr3	100	93.524	ENSMOCG00000014361	Wdr3	100	93.524	Microtus_ochrogaster
ENSMUSG00000033285	Wdr3	99	65.753	ENSMMOG00000019419	wdr3	99	66.070	Mola_mola
ENSMUSG00000033285	Wdr3	99	84.305	ENSMODG00000005243	WDR3	99	84.305	Monodelphis_domestica
ENSMUSG00000033285	Wdr3	99	61.612	ENSMALG00000016265	wdr3	99	61.718	Monopterus_albus
ENSMUSG00000033285	Wdr3	100	98.726	MGP_CAROLIEiJ_G0025421	Wdr3	100	98.726	Mus_caroli
ENSMUSG00000033285	Wdr3	100	98.620	MGP_PahariEiJ_G0026865	Wdr3	100	98.620	Mus_pahari
ENSMUSG00000033285	Wdr3	100	99.151	MGP_SPRETEiJ_G0026371	Wdr3	100	99.151	Mus_spretus
ENSMUSG00000033285	Wdr3	100	89.936	ENSMPUG00000001565	WDR3	100	89.936	Mustela_putorius_furo
ENSMUSG00000033285	Wdr3	100	89.831	ENSMLUG00000003500	WDR3	100	89.831	Myotis_lucifugus
ENSMUSG00000033285	Wdr3	100	91.932	ENSNGAG00000021117	Wdr3	100	91.932	Nannospalax_galili
ENSMUSG00000033285	Wdr3	98	61.869	ENSNBRG00000015140	wdr3	99	61.935	Neolamprologus_brichardi
ENSMUSG00000033285	Wdr3	100	90.360	ENSNLEG00000005304	WDR3	100	90.360	Nomascus_leucogenys
ENSMUSG00000033285	Wdr3	94	94.737	ENSMEUG00000009673	WDR3	81	94.737	Notamacropus_eugenii
ENSMUSG00000033285	Wdr3	100	81.376	ENSOPRG00000001857	WDR3	94	87.662	Ochotona_princeps
ENSMUSG00000033285	Wdr3	93	90.046	ENSODEG00000000136	WDR3	100	90.046	Octodon_degus
ENSMUSG00000033285	Wdr3	98	68.939	ENSONIG00000015678	wdr3	99	68.538	Oreochromis_niloticus
ENSMUSG00000033285	Wdr3	100	75.822	ENSOANG00000003070	WDR3	100	75.822	Ornithorhynchus_anatinus
ENSMUSG00000033285	Wdr3	100	90.572	ENSOCUG00000007572	WDR3	100	90.572	Oryctolagus_cuniculus
ENSMUSG00000033285	Wdr3	99	67.479	ENSORLG00020022391	wdr3	99	67.759	Oryzias_latipes_hni
ENSMUSG00000033285	Wdr3	99	67.479	ENSORLG00015023208	wdr3	99	67.759	Oryzias_latipes_hsok
ENSMUSG00000033285	Wdr3	99	67.161	ENSOMEG00000017592	wdr3	99	67.161	Oryzias_melastigma
ENSMUSG00000033285	Wdr3	100	90.042	ENSOGAG00000007399	WDR3	100	90.042	Otolemur_garnettii
ENSMUSG00000033285	Wdr3	100	90.486	ENSOARG00000020325	WDR3	100	90.486	Ovis_aries
ENSMUSG00000033285	Wdr3	100	90.678	ENSPPAG00000029068	WDR3	100	90.678	Pan_paniscus
ENSMUSG00000033285	Wdr3	100	90.148	ENSPPRG00000022972	WDR3	100	90.148	Panthera_pardus
ENSMUSG00000033285	Wdr3	100	89.936	ENSPTIG00000016747	WDR3	100	89.936	Panthera_tigris_altaica
ENSMUSG00000033285	Wdr3	100	90.678	ENSPTRG00000001168	WDR3	100	90.678	Pan_troglodytes
ENSMUSG00000033285	Wdr3	100	90.996	ENSPANG00000020680	WDR3	100	90.996	Papio_anubis
ENSMUSG00000033285	Wdr3	99	69.915	ENSPKIG00000024900	wdr3	99	70.021	Paramormyrops_kingsleyae
ENSMUSG00000033285	Wdr3	99	80.765	ENSPSIG00000017455	WDR3	99	80.765	Pelodiscus_sinensis
ENSMUSG00000033285	Wdr3	98	65.584	ENSPMGG00000022686	wdr3	99	65.909	Periophthalmus_magnuspinnatus
ENSMUSG00000033285	Wdr3	100	95.860	ENSPEMG00000011928	Wdr3	100	95.860	Peromyscus_maniculatus_bairdii
ENSMUSG00000033285	Wdr3	95	85.890	ENSPCIG00000000938	WDR3	99	85.890	Phascolarctos_cinereus
ENSMUSG00000033285	Wdr3	99	68.360	ENSPFOG00000017900	wdr3	99	68.360	Poecilia_formosa
ENSMUSG00000033285	Wdr3	99	68.644	ENSPLAG00000014362	wdr3	99	68.644	Poecilia_latipinna
ENSMUSG00000033285	Wdr3	100	90.880	ENSPPYG00000000970	WDR3	100	90.880	Pongo_abelii
ENSMUSG00000033285	Wdr3	92	75.000	ENSPCAG00000001265	WDR3	100	75.000	Procavia_capensis
ENSMUSG00000033285	Wdr3	98	66.558	ENSPNYG00000006217	wdr3	99	65.678	Pundamilia_nyererei
ENSMUSG00000033285	Wdr3	100	70.190	ENSPNAG00000006843	wdr3	100	70.190	Pygocentrus_nattereri
ENSMUSG00000033285	Wdr3	100	96.072	ENSRNOG00000019670	Wdr3	100	96.072	Rattus_norvegicus
ENSMUSG00000033285	Wdr3	99	90.364	ENSRBIG00000039149	WDR3	98	89.332	Rhinopithecus_bieti
ENSMUSG00000033285	Wdr3	100	90.360	ENSRROG00000028066	WDR3	100	90.360	Rhinopithecus_roxellana
ENSMUSG00000033285	Wdr3	99	35.887	YLR129W	DIP2	98	36.186	Saccharomyces_cerevisiae
ENSMUSG00000033285	Wdr3	100	90.360	ENSSBOG00000015569	WDR3	100	90.360	Saimiri_boliviensis_boliviensis
ENSMUSG00000033285	Wdr3	100	84.405	ENSSHAG00000005169	WDR3	100	84.405	Sarcophilus_harrisii
ENSMUSG00000033285	Wdr3	99	68.182	ENSSFOG00015000595	wdr3	99	68.182	Scleropages_formosus
ENSMUSG00000033285	Wdr3	99	66.948	ENSSMAG00000008334	wdr3	98	67.634	Scophthalmus_maximus
ENSMUSG00000033285	Wdr3	99	69.068	ENSSDUG00000014276	wdr3	99	69.174	Seriola_dumerili
ENSMUSG00000033285	Wdr3	99	68.326	ENSSLDG00000012837	wdr3	99	68.538	Seriola_lalandi_dorsalis
ENSMUSG00000033285	Wdr3	95	80.834	ENSSARG00000002347	WDR3	100	80.158	Sorex_araneus
ENSMUSG00000033285	Wdr3	99	71.580	ENSSPUG00000005582	WDR3	99	71.898	Sphenodon_punctatus
ENSMUSG00000033285	Wdr3	100	89.936	ENSSSCG00000006727	WDR3	100	89.936	Sus_scrofa
ENSMUSG00000033285	Wdr3	98	76.706	ENSTGUG00000013357	WDR3	99	76.034	Taeniopygia_guttata
ENSMUSG00000033285	Wdr3	99	67.513	ENSTRUG00000002727	wdr3	99	68.042	Takifugu_rubripes
ENSMUSG00000033285	Wdr3	98	67.132	ENSTNIG00000005299	wdr3	98	66.880	Tetraodon_nigroviridis
ENSMUSG00000033285	Wdr3	87	96.063	ENSTBEG00000002549	WDR3	74	96.063	Tupaia_belangeri
ENSMUSG00000033285	Wdr3	100	81.038	ENSTTRG00000003817	WDR3	100	81.038	Tursiops_truncatus
ENSMUSG00000033285	Wdr3	100	85.593	ENSUAMG00000023139	WDR3	100	85.699	Ursus_americanus
ENSMUSG00000033285	Wdr3	90	88.304	ENSVPAG00000000073	WDR3	89	88.304	Vicugna_pacos
ENSMUSG00000033285	Wdr3	100	89.831	ENSVVUG00000010629	WDR3	100	89.831	Vulpes_vulpes
ENSMUSG00000033285	Wdr3	98	72.708	ENSXETG00000009920	wdr3	99	72.334	Xenopus_tropicalis
ENSMUSG00000033285	Wdr3	99	68.432	ENSXMAG00000009827	wdr3	99	68.432	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0031965	nuclear membrane	-	ISO	Component
GO:0032040	small-subunit processome	21873635.	IBA	Component
GO:0034388	Pwp2p-containing subcomplex of 90S preribosome	21873635.	IBA	Component