EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000033439 (Gene tree)
Gene ID: 229780
Gene Symbol: Trmt13
Alias: 4631408H19Rik|A930028L21Rik|Ccdc76
Full Name: tRNA methyltransferase 13
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 33495 bases
Position: chr3:116581093-116614587
Accession: 1925219
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000047320	TRM13	PF05206.14	2.1e-93	1	1
ENSMUSP00000143637	TRM13	PF05206.14	3.5e-18	1	1
ENSMUSP00000047320	zf-U11-48K	PF05253.12	5.9e-09	1	1
ENSMUSP00000142410	zf-TRM13_CCCH	PF11722.8	7.2e-14	1	1
ENSMUSP00000047320	zf-TRM13_CCCH	PF11722.8	6e-13	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000041524	-	3402	XM_006501424	ENSMUSP00000047320	481 (aa)	XP_006501487	Q8BYH3
ENSMUST00000124807	-	686	-	-	- (aa)	-	-
ENSMUST00000183638	-	1723	-	ENSMUSP00000139223	176 (aa)	-	V9GXM2
ENSMUST00000199439	-	865	-	-	- (aa)	-	-
ENSMUST00000126546	-	291	-	-	- (aa)	-	-
ENSMUST00000197190	-	538	-	ENSMUSP00000143637	179 (aa)	-	A0A0G2JGN8
ENSMUST00000134761	-	459	-	ENSMUSP00000138761	64 (aa)	-	S4R2S3
ENSMUST00000156161	-	1991	-	-	- (aa)	-	-
ENSMUST00000198454	-	880	-	ENSMUSP00000142410	145 (aa)	-	A0A0G2JDL0
ENSMUST00000198103	-	869	-	-	- (aa)	-	-
ENSMUST00000184963	-	1616	-	ENSMUSP00000138868	292 (aa)	-	V9GWW9

Gene Model

Click here to download ENSMUSG00000033439's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000033439's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000033439	Trmt13	99	86.164	ENSG00000122435	TRMT13	99	86.164	Homo_sapiens
ENSMUSG00000033439	Trmt13	75	72.917	ENSAPOG00000015131	trmt13	99	48.297	Acanthochromis_polyacanthus
ENSMUSG00000033439	Trmt13	94	91.071	ENSAMEG00000008917	TRMT13	99	83.682	Ailuropoda_melanoleuca
ENSMUSG00000033439	Trmt13	98	55.495	ENSACIG00000005804	trmt13	100	46.853	Amphilophus_citrinellus
ENSMUSG00000033439	Trmt13	75	72.917	ENSAOCG00000023585	trmt13	99	48.096	Amphiprion_ocellaris
ENSMUSG00000033439	Trmt13	75	72.917	ENSAPEG00000004025	trmt13	99	48.611	Amphiprion_percula
ENSMUSG00000033439	Trmt13	75	77.083	ENSATEG00000006597	trmt13	99	51.020	Anabas_testudineus
ENSMUSG00000033439	Trmt13	94	72.619	ENSAPLG00000014924	TRMT13	99	66.745	Anas_platyrhynchos
ENSMUSG00000033439	Trmt13	94	68.639	ENSACAG00000003498	TRMT13	99	63.482	Anolis_carolinensis
ENSMUSG00000033439	Trmt13	99	86.373	ENSANAG00000019525	TRMT13	99	87.037	Aotus_nancymaae
ENSMUSG00000033439	Trmt13	98	57.143	ENSACLG00000020018	trmt13	99	53.079	Astatotilapia_calliptera
ENSMUSG00000033439	Trmt13	94	61.905	ENSAMXG00000017963	trmt13	99	54.812	Astyanax_mexicanus
ENSMUSG00000033439	Trmt13	94	90.476	ENSBTAG00000015781	TRMT13	99	84.100	Bos_taurus
ENSMUSG00000033439	Trmt13	87	30.943	WBGene00013026	Y49A3A.3	64	30.943	Caenorhabditis_elegans
ENSMUSG00000033439	Trmt13	99	84.906	ENSCJAG00000000200	TRMT13	98	87.037	Callithrix_jacchus
ENSMUSG00000033439	Trmt13	65	85.256	ENSCAFG00000020021	TRMT13	98	85.256	Canis_familiaris
ENSMUSG00000033439	Trmt13	94	91.071	ENSCAFG00020011572	TRMT13	100	86.458	Canis_lupus_dingo
ENSMUSG00000033439	Trmt13	94	91.071	ENSCHIG00000015395	TRMT13	99	84.100	Capra_hircus
ENSMUSG00000033439	Trmt13	94	91.667	ENSTSYG00000010811	TRMT13	98	85.859	Carlito_syrichta
ENSMUSG00000033439	Trmt13	52	100.000	ENSCAPG00000009085	TRMT13	100	66.391	Cavia_aperea
ENSMUSG00000033439	Trmt13	94	90.476	ENSCPOG00000000694	TRMT13	99	84.937	Cavia_porcellus
ENSMUSG00000033439	Trmt13	99	85.954	ENSCCAG00000023772	TRMT13	99	86.111	Cebus_capucinus
ENSMUSG00000033439	Trmt13	94	92.262	ENSCATG00000033556	TRMT13	99	86.164	Cercocebus_atys
ENSMUSG00000033439	Trmt13	94	90.476	ENSCLAG00000008220	TRMT13	99	83.255	Chinchilla_lanigera
ENSMUSG00000033439	Trmt13	94	91.667	ENSCSAG00000001506	TRMT13	99	86.373	Chlorocebus_sabaeus
ENSMUSG00000033439	Trmt13	94	74.405	ENSCPBG00000026671	TRMT13	99	68.000	Chrysemys_picta_bellii
ENSMUSG00000033439	Trmt13	94	92.262	ENSCANG00000034659	TRMT13	99	86.583	Colobus_angolensis_palliatus
ENSMUSG00000033439	Trmt13	99	88.797	ENSCGRG00001021601	Trmt13	100	88.797	Cricetulus_griseus_chok1gshd
ENSMUSG00000033439	Trmt13	53	87.209	ENSCGRG00000000093	-	99	87.209	Cricetulus_griseus_crigri
ENSMUSG00000033439	Trmt13	98	49.724	ENSCSEG00000000591	trmt13	99	48.305	Cynoglossus_semilaevis
ENSMUSG00000033439	Trmt13	98	51.042	ENSCVAG00000017342	trmt13	94	50.209	Cyprinodon_variegatus
ENSMUSG00000033439	Trmt13	98	56.568	ENSDARG00000102846	trmt13	98	56.568	Danio_rerio
ENSMUSG00000033439	Trmt13	94	88.690	ENSDNOG00000001710	TRMT13	89	83.849	Dasypus_novemcinctus
ENSMUSG00000033439	Trmt13	99	83.857	ENSDORG00000015808	Trmt13	99	83.857	Dipodomys_ordii
ENSMUSG00000033439	Trmt13	96	32.150	FBgn0037435	CG18048	95	32.150	Drosophila_melanogaster
ENSMUSG00000033439	Trmt13	99	71.190	ENSETEG00000005819	TRMT13	99	71.190	Echinops_telfairi
ENSMUSG00000033439	Trmt13	94	47.619	ENSEBUG00000014444	trmt13	96	45.788	Eptatretus_burgeri
ENSMUSG00000033439	Trmt13	94	92.857	ENSEASG00005015918	TRMT13	99	86.402	Equus_asinus_asinus
ENSMUSG00000033439	Trmt13	94	92.857	ENSECAG00000022626	TRMT13	99	85.983	Equus_caballus
ENSMUSG00000033439	Trmt13	94	86.905	ENSEEUG00000000294	TRMT13	78	76.271	Erinaceus_europaeus
ENSMUSG00000033439	Trmt13	94	64.286	ENSELUG00000003803	trmt13	99	55.789	Esox_lucius
ENSMUSG00000033439	Trmt13	94	92.857	ENSFCAG00000030618	TRMT13	100	86.239	Felis_catus
ENSMUSG00000033439	Trmt13	94	73.214	ENSFALG00000002424	TRMT13	95	66.079	Ficedula_albicollis
ENSMUSG00000033439	Trmt13	94	92.262	ENSFDAG00000006342	TRMT13	99	85.595	Fukomys_damarensis
ENSMUSG00000033439	Trmt13	98	51.667	ENSFHEG00000022954	trmt13	98	52.357	Fundulus_heteroclitus
ENSMUSG00000033439	Trmt13	94	55.952	ENSGMOG00000013223	trmt13	100	50.220	Gadus_morhua
ENSMUSG00000033439	Trmt13	91	73.006	ENSGALG00000005290	TRMT13	98	64.179	Gallus_gallus
ENSMUSG00000033439	Trmt13	97	51.178	ENSGAFG00000001577	trmt13	83	49.815	Gambusia_affinis
ENSMUSG00000033439	Trmt13	98	50.630	ENSGACG00000013428	trmt13	99	51.050	Gasterosteus_aculeatus
ENSMUSG00000033439	Trmt13	94	75.148	ENSGAGG00000023303	TRMT13	99	73.260	Gopherus_agassizii
ENSMUSG00000033439	Trmt13	99	85.954	ENSGGOG00000005616	TRMT13	99	85.954	Gorilla_gorilla
ENSMUSG00000033439	Trmt13	98	57.143	ENSHBUG00000007754	trmt13	99	53.178	Haplochromis_burtoni
ENSMUSG00000033439	Trmt13	94	92.857	ENSHGLG00000002164	TRMT13	99	87.265	Heterocephalus_glaber_female
ENSMUSG00000033439	Trmt13	94	92.857	ENSHGLG00100001618	TRMT13	99	87.265	Heterocephalus_glaber_male
ENSMUSG00000033439	Trmt13	96	46.983	ENSHCOG00000020553	trmt13	98	46.983	Hippocampus_comes
ENSMUSG00000033439	Trmt13	94	64.286	ENSIPUG00000024787	trmt13	99	57.021	Ictalurus_punctatus
ENSMUSG00000033439	Trmt13	94	91.667	ENSSTOG00000013483	TRMT13	99	86.164	Ictidomys_tridecemlineatus
ENSMUSG00000033439	Trmt13	94	90.476	ENSJJAG00000018012	Trmt13	99	84.567	Jaculus_jaculus
ENSMUSG00000033439	Trmt13	65	51.875	ENSKMAG00000007639	trmt13	94	51.875	Kryptolebias_marmoratus
ENSMUSG00000033439	Trmt13	75	72.917	ENSLBEG00000020238	trmt13	99	51.148	Labrus_bergylta
ENSMUSG00000033439	Trmt13	94	66.667	ENSLACG00000013153	TRMT13	100	61.194	Latimeria_chalumnae
ENSMUSG00000033439	Trmt13	98	64.205	ENSLOCG00000000418	trmt13	97	59.653	Lepisosteus_oculatus
ENSMUSG00000033439	Trmt13	77	83.784	ENSLAFG00000002383	TRMT13	100	83.784	Loxodonta_africana
ENSMUSG00000033439	Trmt13	94	92.262	ENSMFAG00000034681	TRMT13	99	86.164	Macaca_fascicularis
ENSMUSG00000033439	Trmt13	94	92.262	ENSMMUG00000004243	TRMT13	99	86.164	Macaca_mulatta
ENSMUSG00000033439	Trmt13	94	92.262	ENSMNEG00000036102	TRMT13	99	86.164	Macaca_nemestrina
ENSMUSG00000033439	Trmt13	94	92.262	ENSMLEG00000034258	TRMT13	99	86.373	Mandrillus_leucophaeus
ENSMUSG00000033439	Trmt13	78	72.000	ENSMAMG00000016597	trmt13	96	52.371	Mastacembelus_armatus
ENSMUSG00000033439	Trmt13	98	56.593	ENSMZEG00005020959	trmt13	99	52.866	Maylandia_zebra
ENSMUSG00000033439	Trmt13	94	73.214	ENSMGAG00000006970	TRMT13	99	66.351	Meleagris_gallopavo
ENSMUSG00000033439	Trmt13	94	94.048	ENSMAUG00000010448	Trmt13	100	86.929	Mesocricetus_auratus
ENSMUSG00000033439	Trmt13	94	92.262	ENSMICG00000005283	TRMT13	100	86.239	Microcebus_murinus
ENSMUSG00000033439	Trmt13	94	92.857	ENSMOCG00000019914	Trmt13	99	86.192	Microtus_ochrogaster
ENSMUSG00000033439	Trmt13	91	50.549	ENSMMOG00000007762	trmt13	92	50.549	Mola_mola
ENSMUSG00000033439	Trmt13	94	83.333	ENSMODG00000003646	TRMT13	99	73.333	Monodelphis_domestica
ENSMUSG00000033439	Trmt13	94	58.333	ENSMALG00000020965	trmt13	99	50.104	Monopterus_albus
ENSMUSG00000033439	Trmt13	100	98.864	MGP_CAROLIEiJ_G0025568	Trmt13	100	98.864	Mus_caroli
ENSMUSG00000033439	Trmt13	100	96.466	MGP_PahariEiJ_G0027014	Trmt13	100	96.466	Mus_pahari
ENSMUSG00000033439	Trmt13	100	100.000	MGP_SPRETEiJ_G0026518	Trmt13	100	100.000	Mus_spretus
ENSMUSG00000033439	Trmt13	75	93.750	ENSMPUG00000012169	-	98	84.211	Mustela_putorius_furo
ENSMUSG00000033439	Trmt13	72	91.406	ENSMPUG00000002078	-	99	82.275	Mustela_putorius_furo
ENSMUSG00000033439	Trmt13	94	89.881	ENSMLUG00000002124	TRMT13	98	77.378	Myotis_lucifugus
ENSMUSG00000033439	Trmt13	98	55.435	ENSNBRG00000006783	trmt13	98	49.372	Neolamprologus_brichardi
ENSMUSG00000033439	Trmt13	99	86.164	ENSNLEG00000035917	TRMT13	99	86.164	Nomascus_leucogenys
ENSMUSG00000033439	Trmt13	95	66.071	ENSMEUG00000013346	-	100	70.968	Notamacropus_eugenii
ENSMUSG00000033439	Trmt13	94	89.881	ENSOPRG00000012048	TRMT13	66	89.338	Ochotona_princeps
ENSMUSG00000033439	Trmt13	99	86.857	ENSODEG00000006075	-	100	86.857	Octodon_degus
ENSMUSG00000033439	Trmt13	98	56.831	ENSONIG00000004574	trmt13	99	53.376	Oreochromis_niloticus
ENSMUSG00000033439	Trmt13	94	78.571	ENSOANG00000012057	TRMT13	99	71.694	Ornithorhynchus_anatinus
ENSMUSG00000033439	Trmt13	99	85.954	ENSOCUG00000023095	TRMT13	99	85.954	Oryctolagus_cuniculus
ENSMUSG00000033439	Trmt13	97	47.479	ENSORLG00000003320	trmt13	99	47.899	Oryzias_latipes
ENSMUSG00000033439	Trmt13	96	50.000	ENSORLG00020005972	trmt13	97	48.414	Oryzias_latipes_hni
ENSMUSG00000033439	Trmt13	94	56.571	ENSORLG00015002270	trmt13	99	51.695	Oryzias_latipes_hsok
ENSMUSG00000033439	Trmt13	96	54.749	ENSOMEG00000006724	trmt13	94	51.709	Oryzias_melastigma
ENSMUSG00000033439	Trmt13	94	91.071	ENSOGAG00000005618	TRMT13	96	85.565	Otolemur_garnettii
ENSMUSG00000033439	Trmt13	94	91.071	ENSOARG00000017983	TRMT13	99	84.100	Ovis_aries
ENSMUSG00000033439	Trmt13	99	85.954	ENSPPAG00000043736	TRMT13	99	85.954	Pan_paniscus
ENSMUSG00000033439	Trmt13	94	92.857	ENSPPRG00000003424	TRMT13	100	86.239	Panthera_pardus
ENSMUSG00000033439	Trmt13	94	92.857	ENSPTIG00000018598	TRMT13	100	86.239	Panthera_tigris_altaica
ENSMUSG00000033439	Trmt13	99	85.954	ENSPTRG00000001001	TRMT13	99	85.954	Pan_troglodytes
ENSMUSG00000033439	Trmt13	94	92.262	ENSPANG00000007598	TRMT13	99	86.583	Papio_anubis
ENSMUSG00000033439	Trmt13	96	61.628	ENSPKIG00000001514	trmt13	99	54.915	Paramormyrops_kingsleyae
ENSMUSG00000033439	Trmt13	94	72.189	ENSPSIG00000012703	TRMT13	99	67.386	Pelodiscus_sinensis
ENSMUSG00000033439	Trmt13	75	75.000	ENSPMGG00000013298	trmt13	97	50.105	Periophthalmus_magnuspinnatus
ENSMUSG00000033439	Trmt13	99	88.075	ENSPEMG00000000275	Trmt13	99	88.075	Peromyscus_maniculatus_bairdii
ENSMUSG00000033439	Trmt13	91	52.695	ENSPMAG00000000823	trmt13	100	45.142	Petromyzon_marinus
ENSMUSG00000033439	Trmt13	94	82.738	ENSPCIG00000007699	TRMT13	99	74.580	Phascolarctos_cinereus
ENSMUSG00000033439	Trmt13	96	52.326	ENSPFOG00000008675	trmt13	96	49.569	Poecilia_formosa
ENSMUSG00000033439	Trmt13	96	50.820	ENSPLAG00000009709	trmt13	99	48.941	Poecilia_latipinna
ENSMUSG00000033439	Trmt13	96	49.180	ENSPMEG00000022954	trmt13	99	47.881	Poecilia_mexicana
ENSMUSG00000033439	Trmt13	98	49.733	ENSPREG00000005645	trmt13	94	50.699	Poecilia_reticulata
ENSMUSG00000033439	Trmt13	99	85.565	ENSPPYG00000001120	TRMT13	99	85.565	Pongo_abelii
ENSMUSG00000033439	Trmt13	99	84.310	ENSPCAG00000002340	TRMT13	99	84.310	Procavia_capensis
ENSMUSG00000033439	Trmt13	99	86.611	ENSPCOG00000017984	TRMT13	99	87.037	Propithecus_coquereli
ENSMUSG00000033439	Trmt13	99	85.356	ENSPVAG00000017430	TRMT13	99	85.356	Pteropus_vampyrus
ENSMUSG00000033439	Trmt13	98	56.044	ENSPNYG00000013690	trmt13	99	51.271	Pundamilia_nyererei
ENSMUSG00000033439	Trmt13	94	60.714	ENSPNAG00000022130	trmt13	99	55.794	Pygocentrus_nattereri
ENSMUSG00000033439	Trmt13	99	94.583	ENSRNOG00000015140	Trmt13	97	94.583	Rattus_norvegicus
ENSMUSG00000033439	Trmt13	94	92.262	ENSRBIG00000037686	TRMT13	99	86.583	Rhinopithecus_bieti
ENSMUSG00000033439	Trmt13	94	92.262	ENSRROG00000044057	TRMT13	99	86.583	Rhinopithecus_roxellana
ENSMUSG00000033439	Trmt13	94	91.667	ENSSBOG00000026541	TRMT13	99	87.037	Saimiri_boliviensis_boliviensis
ENSMUSG00000033439	Trmt13	94	83.333	ENSSHAG00000005213	TRMT13	95	75.758	Sarcophilus_harrisii
ENSMUSG00000033439	Trmt13	94	62.500	ENSSFOG00015017560	trmt13	98	54.818	Scleropages_formosus
ENSMUSG00000033439	Trmt13	99	51.913	ENSSMAG00000014592	trmt13	97	49.895	Scophthalmus_maximus
ENSMUSG00000033439	Trmt13	98	52.198	ENSSDUG00000015508	trmt13	98	49.695	Seriola_dumerili
ENSMUSG00000033439	Trmt13	98	52.198	ENSSLDG00000019060	trmt13	99	49.798	Seriola_lalandi_dorsalis
ENSMUSG00000033439	Trmt13	86	86.093	ENSSARG00000010344	TRMT13	97	74.348	Sorex_araneus
ENSMUSG00000033439	Trmt13	94	71.429	ENSSPUG00000016339	TRMT13	99	67.982	Sphenodon_punctatus
ENSMUSG00000033439	Trmt13	98	54.891	ENSSPAG00000011922	trmt13	98	51.820	Stegastes_partitus
ENSMUSG00000033439	Trmt13	94	91.667	ENSSSCG00000006869	TRMT13	99	84.519	Sus_scrofa
ENSMUSG00000033439	Trmt13	94	73.810	ENSTGUG00000005253	TRMT13	98	65.870	Taeniopygia_guttata
ENSMUSG00000033439	Trmt13	96	52.809	ENSTRUG00000008400	trmt13	99	49.790	Takifugu_rubripes
ENSMUSG00000033439	Trmt13	88	86.076	ENSTBEG00000008911	TRMT13	99	69.734	Tupaia_belangeri
ENSMUSG00000033439	Trmt13	75	95.833	ENSTTRG00000015302	-	60	90.789	Tursiops_truncatus
ENSMUSG00000033439	Trmt13	99	79.541	ENSUAMG00000017251	TRMT13	99	79.541	Ursus_americanus
ENSMUSG00000033439	Trmt13	94	91.071	ENSUMAG00000007901	TRMT13	99	85.548	Ursus_maritimus
ENSMUSG00000033439	Trmt13	89	69.393	ENSVPAG00000001034	TRMT13	99	69.393	Vicugna_pacos
ENSMUSG00000033439	Trmt13	96	90.116	ENSVVUG00000021996	TRMT13	99	84.969	Vulpes_vulpes
ENSMUSG00000033439	Trmt13	75	83.333	ENSXETG00000013204	trmt13	99	55.839	Xenopus_tropicalis
ENSMUSG00000033439	Trmt13	75	66.667	ENSXCOG00000008120	-	91	54.545	Xiphophorus_couchianus
ENSMUSG00000033439	Trmt13	98	49.198	ENSXMAG00000010765	trmt13	99	48.211	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005575	cellular_component	-	ND	Component
GO:0008033	tRNA processing	-	IEA	Process
GO:0008168	methyltransferase activity	-	IEA	Function
GO:0008175	tRNA methyltransferase activity	21873635.	IBA	Function
GO:0016740	transferase activity	-	IEA	Function
GO:0030488	tRNA methylation	21873635.	IBA	Process
GO:0032259	methylation	-	IEA	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0106050	tRNA 2'-O-methyltransferase activity	-	IEA	Function