EuRBPDB

Description

Ensembl ID: ENSMUSG00000033444 (Gene tree)
Gene ID: 74392
Gene Symbol: Specc1l
Alias: 4930470P14Rik|4932439K10Rik|9530057A13Rik|Cytsa|Specc1l
Full Name: sperm antigen with calponin homology and coiled-coil domains 1-like
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 100671
Position: chr10: 75212073-75312743
Accession: 1921642
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000040105	-	5928	XM_011243589	ENSMUSP00000045099	1135 (aa)	XP_011241891	A0A0R4J0J8
ENSMUST00000218766	-	4725	XM_006514252	ENSMUSP00000151322	1118 (aa)	XP_006514315	Q2KN98
ENSMUST00000105421	-	6632	-	ENSMUSP00000101061	1135 (aa)	-	A0A0R4J0J8
ENSMUST00000219387	-	469	-	ENSMUSP00000151552	120 (aa)	-	A0A1W2P785
ENSMUST00000218644	-	737	-	-	- (aa)	-	-
ENSMUST00000218876	-	3167	-	-	- (aa)	-	-
ENSMUST00000219430	-	3943	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000033444	Specc1l	100	95.170	ENSG00000100014	SPECC1L	100	95.170	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005815	microtubule organizing center	21873635.	IBA	Component
GO:0005815	microtubule organizing center	21703590.	IDA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005921	gap junction	-	IEA	Component
GO:0007026	negative regulation of microtubule depolymerization	21703590.	IDA	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0007155	cell adhesion	21703590.	ISO	Process
GO:0015629	actin cytoskeleton	21703590.	IDA	Component
GO:0015629	actin cytoskeleton	-	ISO	Component
GO:0015630	microtubule cytoskeleton	21703590.	IDA	Component
GO:0016477	cell migration	21703590.	IMP	Process
GO:0030036	actin cytoskeleton organization	21873635.	IBA	Process
GO:0030036	actin cytoskeleton organization	21703590.	IMP	Process
GO:0030054	cell junction	-	IEA	Component
GO:0030835	negative regulation of actin filament depolymerization	21703590.	IDA	Process
GO:0031941	filamentous actin	21873635.	IBA	Component
GO:0031941	filamentous actin	21703590.	IDA	Component
GO:0051301	cell division	-	IEA	Process
GO:0060325	face morphogenesis	21703590.	ISO	Process