EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000033499 (Gene tree)
Gene ID: 217980
Gene Symbol: Larp4b
Alias: D13Wsu64e|Larp5
Full Name: La ribonucleoprotein domain family%2C member 4B
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 80571 bases
Position: chr13:9093881-9174451
Accession: 106330
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000089437	La	PF05383.17	4.7e-14	1	1
ENSMUSP00000139578	La	PF05383.17	5.1e-14	1	1
ENSMUSP00000140993	La	PF05383.17	5.6e-14	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000190041	-	557	-	ENSMUSP00000139927	36 (aa)	-	A0A087WPU9
ENSMUST00000189330	-	4666	-	-	- (aa)	-	-
ENSMUST00000188523	-	385	-	-	- (aa)	-	-
ENSMUST00000188939	-	2658	-	ENSMUSP00000139578	663 (aa)	-	Q6A0A2
ENSMUST00000091829	-	5720	XM_011244254	ENSMUSP00000089437	657 (aa)	XP_011242556	Q6A0A2
ENSMUST00000188211	-	5610	XM_006516476	ENSMUSP00000140993	741 (aa)	XP_006516539	Q6A0A2
ENSMUST00000190331	-	405	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000033499's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000033499's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000033499	Larp4b	90	48.711	ENSMUSG00000023025	Larp4	99	37.863

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000033499	Larp4b	100	87.719	ENSG00000107929	LARP4B	100	87.719	Homo_sapiens
ENSMUSG00000033499	Larp4b	100	50.168	ENSAPOG00000020531	LARP4B	100	55.236	Acanthochromis_polyacanthus
ENSMUSG00000033499	Larp4b	100	87.018	ENSAMEG00000001810	LARP4B	100	84.367	Ailuropoda_melanoleuca
ENSMUSG00000033499	Larp4b	86	61.618	ENSAOCG00000007887	-	79	84.768	Amphiprion_ocellaris
ENSMUSG00000033499	Larp4b	93	58.051	ENSAPEG00000002512	LARP4B	98	56.384	Amphiprion_percula
ENSMUSG00000033499	Larp4b	100	60.201	ENSATEG00000012614	LARP4B	100	55.130	Anabas_testudineus
ENSMUSG00000033499	Larp4b	100	78.584	ENSAPLG00000003813	LARP4B	98	76.228	Anas_platyrhynchos
ENSMUSG00000033499	Larp4b	100	77.014	ENSACAG00000002858	LARP4B	100	73.803	Anolis_carolinensis
ENSMUSG00000033499	Larp4b	100	87.045	ENSANAG00000007531	-	100	86.910	Aotus_nancymaae
ENSMUSG00000033499	Larp4b	100	62.586	ENSACLG00000026356	LARP4B	100	57.054	Astatotilapia_calliptera
ENSMUSG00000033499	Larp4b	95	58.140	ENSAMXG00000003335	larp4b	91	53.801	Astyanax_mexicanus
ENSMUSG00000033499	Larp4b	100	81.048	ENSBTAG00000013899	LARP4B	100	80.914	Bos_taurus
ENSMUSG00000033499	Larp4b	100	86.370	ENSCJAG00000018434	LARP4B	100	86.235	Callithrix_jacchus
ENSMUSG00000033499	Larp4b	100	88.246	ENSCAFG00020004209	LARP4B	100	85.175	Canis_lupus_dingo
ENSMUSG00000033499	Larp4b	100	80.645	ENSCHIG00000013543	LARP4B	100	80.511	Capra_hircus
ENSMUSG00000033499	Larp4b	80	89.580	ENSTSYG00000002568	LARP4B	100	89.412	Carlito_syrichta
ENSMUSG00000033499	Larp4b	96	82.474	ENSCAPG00000009725	LARP4B	97	78.073	Cavia_aperea
ENSMUSG00000033499	Larp4b	100	92.443	ENSCPOG00000009375	LARP4B	100	89.609	Cavia_porcellus
ENSMUSG00000033499	Larp4b	100	87.179	ENSCCAG00000024869	LARP4B	100	87.045	Cebus_capucinus
ENSMUSG00000033499	Larp4b	100	87.989	ENSCATG00000019750	LARP4B	100	87.854	Cercocebus_atys
ENSMUSG00000033499	Larp4b	100	92.271	ENSCLAG00000011570	LARP4B	100	88.949	Chinchilla_lanigera
ENSMUSG00000033499	Larp4b	66	88.710	ENSCHOG00000007831	-	66	88.710	Choloepus_hoffmanni
ENSMUSG00000033499	Larp4b	100	78.584	ENSCPBG00000017063	LARP4B	100	76.064	Chrysemys_picta_bellii
ENSMUSG00000033499	Larp4b	100	86.100	ENSCANG00000038021	LARP4B	100	85.965	Colobus_angolensis_palliatus
ENSMUSG00000033499	Larp4b	100	94.872	ENSCGRG00001022930	Larp4b	100	94.872	Cricetulus_griseus_chok1gshd
ENSMUSG00000033499	Larp4b	100	94.872	ENSCGRG00000006022	Larp4b	100	94.872	Cricetulus_griseus_crigri
ENSMUSG00000033499	Larp4b	100	54.128	ENSCSEG00000007342	LARP4B	100	54.391	Cynoglossus_semilaevis
ENSMUSG00000033499	Larp4b	100	60.258	ENSCVAG00000008910	LARP4B	100	56.305	Cyprinodon_variegatus
ENSMUSG00000033499	Larp4b	87	57.870	ENSDARG00000062146	larp4b	90	53.275	Danio_rerio
ENSMUSG00000033499	Larp4b	93	89.344	ENSDNOG00000045543	-	100	88.956	Dasypus_novemcinctus
ENSMUSG00000033499	Larp4b	100	88.855	ENSDORG00000009328	Larp4b	100	90.175	Dipodomys_ordii
ENSMUSG00000033499	Larp4b	89	81.781	ENSETEG00000011249	LARP4B	91	83.162	Echinops_telfairi
ENSMUSG00000033499	Larp4b	100	85.984	ENSEASG00005019068	-	100	85.849	Equus_asinus_asinus
ENSMUSG00000033499	Larp4b	100	85.849	ENSECAG00000024040	LARP4B	100	85.714	Equus_caballus
ENSMUSG00000033499	Larp4b	100	81.074	ENSEEUG00000008391	LARP4B	98	80.940	Erinaceus_europaeus
ENSMUSG00000033499	Larp4b	100	60.000	ENSELUG00000008626	LARP4B	100	56.700	Esox_lucius
ENSMUSG00000033499	Larp4b	86	49.005	ENSELUG00000001417	-	94	40.148	Esox_lucius
ENSMUSG00000033499	Larp4b	100	87.368	ENSFCAG00000000721	-	100	84.140	Felis_catus
ENSMUSG00000033499	Larp4b	100	77.375	ENSFALG00000006961	LARP4B	100	75.133	Ficedula_albicollis
ENSMUSG00000033499	Larp4b	100	93.497	ENSFDAG00000006158	LARP4B	97	89.757	Fukomys_damarensis
ENSMUSG00000033499	Larp4b	100	51.358	ENSFHEG00000013037	LARP4B	65	89.916	Fundulus_heteroclitus
ENSMUSG00000033499	Larp4b	82	65.312	ENSGMOG00000010818	-	88	68.889	Gadus_morhua
ENSMUSG00000033499	Larp4b	100	78.066	ENSGALG00000006672	LARP4B	100	75.497	Gallus_gallus
ENSMUSG00000033499	Larp4b	100	57.752	ENSGACG00000017535	LARP4B	98	58.656	Gasterosteus_aculeatus
ENSMUSG00000033499	Larp4b	90	81.092	ENSGAGG00000008598	LARP4B	100	77.843	Gopherus_agassizii
ENSMUSG00000033499	Larp4b	100	87.584	ENSGGOG00000003572	LARP4B	100	87.449	Gorilla_gorilla
ENSMUSG00000033499	Larp4b	100	62.069	ENSHBUG00000007535	LARP4B	100	56.125	Haplochromis_burtoni
ENSMUSG00000033499	Larp4b	100	93.497	ENSHGLG00000012936	LARP4B	100	93.497	Heterocephalus_glaber_female
ENSMUSG00000033499	Larp4b	86	78.450	ENSHGLG00100017261	-	100	74.808	Heterocephalus_glaber_male
ENSMUSG00000033499	Larp4b	100	93.146	ENSHGLG00100016220	-	100	90.027	Heterocephalus_glaber_male
ENSMUSG00000033499	Larp4b	99	61.298	ENSHCOG00000011581	LARP4B	89	53.719	Hippocampus_comes
ENSMUSG00000033499	Larp4b	93	52.558	ENSIPUG00000009705	larp4b	90	52.500	Ictalurus_punctatus
ENSMUSG00000033499	Larp4b	100	94.912	ENSSTOG00000000587	LARP4B	100	87.752	Ictidomys_tridecemlineatus
ENSMUSG00000033499	Larp4b	100	91.228	ENSJJAG00000020847	Larp4b	100	91.093	Jaculus_jaculus
ENSMUSG00000033499	Larp4b	100	61.148	ENSKMAG00000021674	LARP4B	100	57.783	Kryptolebias_marmoratus
ENSMUSG00000033499	Larp4b	86	60.606	ENSLBEG00000025293	-	81	60.097	Labrus_bergylta
ENSMUSG00000033499	Larp4b	90	70.736	ENSLACG00000009492	LARP4B	100	66.136	Latimeria_chalumnae
ENSMUSG00000033499	Larp4b	100	66.667	ENSLOCG00000012290	larp4b	100	66.284	Lepisosteus_oculatus
ENSMUSG00000033499	Larp4b	100	87.981	ENSLAFG00000015334	LARP4B	100	86.619	Loxodonta_africana
ENSMUSG00000033499	Larp4b	100	87.989	ENSMFAG00000001766	LARP4B	100	85.830	Macaca_fascicularis
ENSMUSG00000033499	Larp4b	100	87.989	ENSMMUG00000005279	LARP4B	100	87.854	Macaca_mulatta
ENSMUSG00000033499	Larp4b	100	87.854	ENSMNEG00000014019	LARP4B	100	85.830	Macaca_nemestrina
ENSMUSG00000033499	Larp4b	100	87.601	ENSMLEG00000035198	LARP4B	100	87.466	Mandrillus_leucophaeus
ENSMUSG00000033499	Larp4b	100	58.786	ENSMAMG00000013742	LARP4B	100	55.886	Mastacembelus_armatus
ENSMUSG00000033499	Larp4b	78	73.893	ENSMZEG00005006498	-	96	61.440	Maylandia_zebra
ENSMUSG00000033499	Larp4b	81	70.796	ENSMZEG00005014594	-	100	57.415	Maylandia_zebra
ENSMUSG00000033499	Larp4b	100	78.856	ENSMGAG00000005472	LARP4B	100	74.069	Meleagris_gallopavo
ENSMUSG00000033499	Larp4b	100	95.475	ENSMAUG00000021657	Larp4b	100	97.012	Mesocricetus_auratus
ENSMUSG00000033499	Larp4b	100	84.534	ENSMICG00000001301	LARP4B	100	82.321	Microcebus_murinus
ENSMUSG00000033499	Larp4b	100	95.324	ENSMOCG00000021452	Larp4b	100	96.309	Microtus_ochrogaster
ENSMUSG00000033499	Larp4b	78	69.374	ENSMMOG00000011253	-	89	61.514	Mola_mola
ENSMUSG00000033499	Larp4b	100	77.751	ENSMODG00000005957	LARP4B	100	73.879	Monodelphis_domestica
ENSMUSG00000033499	Larp4b	100	49.668	ENSMALG00000012432	LARP4B	100	50.863	Monopterus_albus
ENSMUSG00000033499	Larp4b	100	98.341	MGP_CAROLIEiJ_G0018216	Larp4b	100	98.341	Mus_caroli
ENSMUSG00000033499	Larp4b	100	97.436	MGP_PahariEiJ_G0019266	Larp4b	100	97.436	Mus_pahari
ENSMUSG00000033499	Larp4b	100	99.865	MGP_SPRETEiJ_G0019074	Larp4b	100	99.865	Mus_spretus
ENSMUSG00000033499	Larp4b	100	87.018	ENSMPUG00000016220	LARP4B	97	83.962	Mustela_putorius_furo
ENSMUSG00000033499	Larp4b	94	82.158	ENSMLUG00000005880	LARP4B	100	82.158	Myotis_lucifugus
ENSMUSG00000033499	Larp4b	100	90.688	ENSNGAG00000001750	Larp4b	100	90.688	Nannospalax_galili
ENSMUSG00000033499	Larp4b	78	62.704	ENSNBRG00000020018	LARP4B	88	55.233	Neolamprologus_brichardi
ENSMUSG00000033499	Larp4b	100	87.314	ENSNLEG00000013442	LARP4B	100	87.179	Nomascus_leucogenys
ENSMUSG00000033499	Larp4b	79	84.211	ENSMEUG00000013114	-	70	84.211	Notamacropus_eugenii
ENSMUSG00000033499	Larp4b	98	90.580	ENSOPRG00000003300	LARP4B	100	86.765	Ochotona_princeps
ENSMUSG00000033499	Larp4b	100	86.995	ENSODEG00000001109	LARP4B	100	86.995	Octodon_degus
ENSMUSG00000033499	Larp4b	100	63.069	ENSONIG00000017705	LARP4B	100	59.283	Oreochromis_niloticus
ENSMUSG00000033499	Larp4b	100	77.033	ENSOANG00000006100	LARP4B	100	74.572	Ornithorhynchus_anatinus
ENSMUSG00000033499	Larp4b	100	88.482	ENSOCUG00000004950	LARP4B	97	88.351	Oryctolagus_cuniculus
ENSMUSG00000033499	Larp4b	100	60.678	ENSORLG00000006080	LARP4B	100	55.181	Oryzias_latipes
ENSMUSG00000033499	Larp4b	100	60.406	ENSORLG00020020940	LARP4B	100	55.044	Oryzias_latipes_hni
ENSMUSG00000033499	Larp4b	100	60.575	ENSORLG00015020608	LARP4B	100	55.250	Oryzias_latipes_hsok
ENSMUSG00000033499	Larp4b	100	58.997	ENSOMEG00000019619	LARP4B	100	54.373	Oryzias_melastigma
ENSMUSG00000033499	Larp4b	93	87.165	ENSOGAG00000011540	LARP4B	100	84.582	Otolemur_garnettii
ENSMUSG00000033499	Larp4b	100	80.589	ENSOARG00000015320	LARP4B	98	80.455	Ovis_aries
ENSMUSG00000033499	Larp4b	100	87.449	ENSPPAG00000039232	LARP4B	100	87.314	Pan_paniscus
ENSMUSG00000033499	Larp4b	100	87.544	ENSPPRG00000009489	LARP4B	100	84.501	Panthera_pardus
ENSMUSG00000033499	Larp4b	100	87.368	ENSPTIG00000008543	LARP4B	100	84.367	Panthera_tigris_altaica
ENSMUSG00000033499	Larp4b	100	87.449	ENSPTRG00000002235	LARP4B	100	87.314	Pan_troglodytes
ENSMUSG00000033499	Larp4b	100	87.989	ENSPANG00000023546	LARP4B	100	85.965	Papio_anubis
ENSMUSG00000033499	Larp4b	99	56.104	ENSPKIG00000012368	LARP4B	99	56.291	Paramormyrops_kingsleyae
ENSMUSG00000033499	Larp4b	85	85.714	ENSPSIG00000005600	LARP4B	99	85.714	Pelodiscus_sinensis
ENSMUSG00000033499	Larp4b	98	59.524	ENSPMGG00000008261	LARP4B	91	53.714	Periophthalmus_magnuspinnatus
ENSMUSG00000033499	Larp4b	100	94.872	ENSPEMG00000014052	Larp4b	100	94.737	Peromyscus_maniculatus_bairdii
ENSMUSG00000033499	Larp4b	100	60.000	ENSPFOG00000000029	LARP4B	100	55.583	Poecilia_formosa
ENSMUSG00000033499	Larp4b	100	60.000	ENSPLAG00000002871	LARP4B	100	56.047	Poecilia_latipinna
ENSMUSG00000033499	Larp4b	100	59.903	ENSPMEG00000016361	LARP4B	100	55.707	Poecilia_mexicana
ENSMUSG00000033499	Larp4b	100	87.601	ENSPPYG00000002035	LARP4B	97	87.466	Pongo_abelii
ENSMUSG00000033499	Larp4b	100	88.049	ENSPCOG00000014688	LARP4B	100	85.695	Propithecus_coquereli
ENSMUSG00000033499	Larp4b	85	88.571	ENSPVAG00000009784	LARP4B	88	88.571	Pteropus_vampyrus
ENSMUSG00000033499	Larp4b	100	62.586	ENSPNYG00000024252	LARP4B	100	56.804	Pundamilia_nyererei
ENSMUSG00000033499	Larp4b	95	54.116	ENSPNAG00000028956	larp4b	90	53.891	Pygocentrus_nattereri
ENSMUSG00000033499	Larp4b	99	96.081	ENSRNOG00000015888	Larp4b	100	96.081	Rattus_norvegicus
ENSMUSG00000033499	Larp4b	100	87.719	ENSRBIG00000033294	LARP4B	100	87.584	Rhinopithecus_bieti
ENSMUSG00000033499	Larp4b	100	87.449	ENSRROG00000033879	LARP4B	100	87.314	Rhinopithecus_roxellana
ENSMUSG00000033499	Larp4b	100	81.511	ENSSBOG00000021109	LARP4B	100	81.377	Saimiri_boliviensis_boliviensis
ENSMUSG00000033499	Larp4b	100	77.990	ENSSHAG00000013392	LARP4B	100	75.467	Sarcophilus_harrisii
ENSMUSG00000033499	Larp4b	91	59.828	ENSSFOG00015003256	LARP4B	93	56.584	Scleropages_formosus
ENSMUSG00000033499	Larp4b	100	59.060	ENSSMAG00000005982	-	99	75.862	Scophthalmus_maximus
ENSMUSG00000033499	Larp4b	100	61.618	ENSSDUG00000006704	LARP4B	100	57.143	Seriola_dumerili
ENSMUSG00000033499	Larp4b	86	66.939	ENSSLDG00000020660	LARP4B	99	59.503	Seriola_lalandi_dorsalis
ENSMUSG00000033499	Larp4b	63	98.113	ENSSARG00000001243	-	79	98.113	Sorex_araneus
ENSMUSG00000033499	Larp4b	100	73.387	ENSSPUG00000002102	-	100	73.253	Sphenodon_punctatus
ENSMUSG00000033499	Larp4b	79	80.169	ENSSPUG00000013734	-	91	80.000	Sphenodon_punctatus
ENSMUSG00000033499	Larp4b	100	61.575	ENSSPAG00000014628	LARP4B	100	61.575	Stegastes_partitus
ENSMUSG00000033499	Larp4b	100	80.728	ENSSSCG00000011162	LARP4B	100	83.934	Sus_scrofa
ENSMUSG00000033499	Larp4b	100	77.816	ENSTGUG00000000811	-	100	75.467	Taeniopygia_guttata
ENSMUSG00000033499	Larp4b	100	55.556	ENSTNIG00000004571	-	98	56.812	Tetraodon_nigroviridis
ENSMUSG00000033499	Larp4b	98	64.663	ENSTNIG00000007991	LARP4B	99	55.019	Tetraodon_nigroviridis
ENSMUSG00000033499	Larp4b	89	88.647	ENSTTRG00000011151	LARP4B	90	87.600	Tursiops_truncatus
ENSMUSG00000033499	Larp4b	86	87.895	ENSUAMG00000016461	LARP4B	95	86.687	Ursus_americanus
ENSMUSG00000033499	Larp4b	100	87.895	ENSUMAG00000016127	LARP4B	100	84.906	Ursus_maritimus
ENSMUSG00000033499	Larp4b	57	94.944	ENSVPAG00000000128	-	73	94.944	Vicugna_pacos
ENSMUSG00000033499	Larp4b	100	87.719	ENSVVUG00000008641	LARP4B	100	84.771	Vulpes_vulpes
ENSMUSG00000033499	Larp4b	99	73.634	ENSXETG00000016882	larp4b	100	69.789	Xenopus_tropicalis
ENSMUSG00000033499	Larp4b	100	57.607	ENSXCOG00000019952	LARP4B	100	53.590	Xiphophorus_couchianus
ENSMUSG00000033499	Larp4b	100	59.677	ENSXMAG00000021533	LARP4B	100	55.375	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006417	regulation of translation	-	IEA	Process
GO:0010494	cytoplasmic stress granule	-	ISO	Component
GO:0042788	polysomal ribosome	-	ISO	Component
GO:0045727	positive regulation of translation	-	ISO	Process