EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000144153	-	3391	-	ENSMUSP00000122761	890 (aa)	-	B0QZF8
ENSMUST00000141647	-	3815	-	-	- (aa)	-	-
ENSMUST00000092382	-	5609	-	ENSMUSP00000090036	1098 (aa)	-	B1AQJ2
ENSMUST00000106296	-	5655	XM_006534302	ENSMUSP00000101903	1098 (aa)	XP_006534365	B1AQJ2
ENSMUST00000151433	-	1821	-	-	- (aa)	-	-
ENSMUST00000148998	-	1212	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000033909	Usp36	100	72.896	ENSG00000055483	USP36	99	91.429	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0004197	cysteine-type endopeptidase activity	21873635.	IBA	Function
GO:0004843	thiol-dependent ubiquitin-specific protease activity	21873635.	IBA	Function
GO:0004843	thiol-dependent ubiquitin-specific protease activity	-	ISO	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006508	proteolysis	-	IEA	Process
GO:0006511	ubiquitin-dependent protein catabolic process	-	IEA	Process
GO:0007000	nucleolus organization	29273634.	IMP	Process
GO:0007000	nucleolus organization	-	ISO	Process
GO:0008233	peptidase activity	-	IEA	Function
GO:0008234	cysteine-type peptidase activity	-	IEA	Function
GO:0016242	negative regulation of macroautophagy	-	ISO	Process
GO:0016578	histone deubiquitination	-	ISO	Process
GO:0016579	protein deubiquitination	21873635.	IBA	Process
GO:0016579	protein deubiquitination	29273634.	IMP	Process
GO:0016579	protein deubiquitination	-	ISO	Process
GO:0016607	nuclear speck	-	ISO	Component
GO:0016787	hydrolase activity	-	IEA	Function
GO:0031647	regulation of protein stability	-	ISO	Process
GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	-	IEA	Function
GO:0042981	regulation of apoptotic process	21873635.	IBA	Process
GO:0050821	protein stabilization	29273634.	IMP	Process
GO:2000232	regulation of rRNA processing	29273634.	IMP	Process
GO:2000232	regulation of rRNA processing	-	ISO	Process