EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000034021 (Gene tree)
Gene ID: 100710
Gene Symbol: Pds5b
Alias: AS3|Aprin|Her-2 Tg|Tg(Wap-ERBB2)229Wzw|WAP-Her-2
Full Name: PDS5 cohesin associated factor B
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 136952
Position: chr5: 150673739-150810690
Accession: 2140945
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000201920	-	723	-	-	- (aa)	-	-
ENSMUST00000133738	-	584	-	-	- (aa)	-	-
ENSMUST00000154083	-	668	-	-	- (aa)	-	-
ENSMUST00000202170	-	6598	XM_006504902	ENSMUSP00000144572	1448 (aa)	XP_006504965	Q4VA53
ENSMUST00000016569	-	7417	XM_006504903	ENSMUSP00000016569	1446 (aa)	XP_006504966	Q4VA53
ENSMUST00000038900	-	7315	XM_006504901	ENSMUSP00000038421	1449 (aa)	XP_006504964	F8WHU5
ENSMUST00000132947	-	3152	-	-	- (aa)	-	-
ENSMUST00000110486	-	2900	-	ENSMUSP00000106112	701 (aa)	-	Q4VA53

Gene Model

Click here to download ENSMUSG00000034021's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000034021's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000034021	Pds5b	100	96.409	ENSG00000083642	PDS5B	100	97.268	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000785	chromatin	21873635.	IBA	Component
GO:0000785	chromatin	-	ISO	Component
GO:0002088	lens development in camera-type eye	19412548.	IMP	Process
GO:0003677	DNA binding	19412548.	ISO	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006281	DNA repair	21873635.	IBA	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0007064	mitotic sister chromatid cohesion	21873635.	IBA	Process
GO:0007064	mitotic sister chromatid cohesion	-	ISO	Process
GO:0008285	negative regulation of cell proliferation	-	ISO	Process
GO:0042127	regulation of cell proliferation	-	ISO	Process
GO:0051301	cell division	-	IEA	Process
GO:0097402	neuroblast migration	19412548.	IMP	Process