EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000034022 (Gene tree)
Gene ID: 94230
Gene Symbol: Cpsf1
Alias: -
Full Name: cleavage and polyadenylation specific factor 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 11789 bases
Position: chr15:76595803-76607591
Accession: 2679722
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000071794	CPSF_A	PF03178.15	6.5e-92	1	1
ENSMUSP00000155308	CPSF_A	PF03178.15	6.7e-92	1	1
ENSMUSP00000155746	CPSF_A	PF03178.15	1.3e-17	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000230903	-	2904	-	-	- (aa)	-	-
ENSMUST00000229287	-	439	-	ENSMUSP00000155746	121 (aa)	-	A0A2R8VI46
ENSMUST00000231037	-	896	-	-	- (aa)	-	-
ENSMUST00000229504	-	606	-	-	- (aa)	-	-
ENSMUST00000229367	-	849	-	-	- (aa)	-	-
ENSMUST00000230157	-	4410	XM_006521602	ENSMUSP00000155308	1450 (aa)	XP_006521665	A0A2R8VK76
ENSMUST00000229797	-	710	-	-	- (aa)	-	-
ENSMUST00000229982	-	1516	-	-	- (aa)	-	-
ENSMUST00000071898	-	4518	XM_006521603	ENSMUSP00000071794	1441 (aa)	-	Q9EPU4
ENSMUST00000229269	-	1433	-	-	- (aa)	-	-
ENSMUST00000230149	-	699	-	-	- (aa)	-	-
ENSMUST00000231009	-	1246	-	-	- (aa)	-	-
ENSMUST00000229437	-	791	-	-	- (aa)	-	-
ENSMUST00000230557	-	198	-	-	- (aa)	-	-
ENSMUST00000231191	-	646	-	-	- (aa)	-	-
ENSMUST00000229447	-	609	-	-	- (aa)	-	-
ENSMUST00000231042	-	4340	-	ENSMUSP00000155098	89 (aa)	-	A0A2R8VK03
ENSMUST00000229015	-	616	-	-	- (aa)	-	-
ENSMUST00000229798	-	764	-	-	- (aa)	-	-
ENSMUST00000230822	-	1415	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000034022's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000034022's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000034022	Cpsf1	100	96.535	ENSG00000071894	CPSF1	100	96.535	Homo_sapiens
ENSMUSG00000034022	Cpsf1	100	78.026	ENSAPOG00000019621	cpsf1	100	78.229	Acanthochromis_polyacanthus
ENSMUSG00000034022	Cpsf1	97	94.711	ENSAMEG00000005557	CPSF1	100	94.711	Ailuropoda_melanoleuca
ENSMUSG00000034022	Cpsf1	100	78.532	ENSACIG00000006112	cpsf1	100	78.878	Amphilophus_citrinellus
ENSMUSG00000034022	Cpsf1	100	79.669	ENSAOCG00000007120	cpsf1	100	79.876	Amphiprion_ocellaris
ENSMUSG00000034022	Cpsf1	100	80.014	ENSAPEG00000005755	cpsf1	100	80.152	Amphiprion_percula
ENSMUSG00000034022	Cpsf1	100	78.003	ENSATEG00000011097	cpsf1	100	78.340	Anabas_testudineus
ENSMUSG00000034022	Cpsf1	93	81.757	ENSACAG00000009655	CPSF1	100	81.757	Anolis_carolinensis
ENSMUSG00000034022	Cpsf1	100	96.602	ENSANAG00000036514	CPSF1	100	96.602	Aotus_nancymaae
ENSMUSG00000034022	Cpsf1	100	77.632	ENSACLG00000012231	cpsf1	99	79.014	Astatotilapia_calliptera
ENSMUSG00000034022	Cpsf1	100	73.997	ENSAMXG00000008485	cpsf1	100	74.066	Astyanax_mexicanus
ENSMUSG00000034022	Cpsf1	100	94.350	ENSBTAG00000008355	CPSF1	100	94.597	Bos_taurus
ENSMUSG00000034022	Cpsf1	100	32.016	WBGene00022301	cpsf-1	100	40.169	Caenorhabditis_elegans
ENSMUSG00000034022	Cpsf1	99	99.167	ENSCJAG00000021421	CPSF1	100	96.533	Callithrix_jacchus
ENSMUSG00000034022	Cpsf1	97	96.280	ENSCAFG00000001600	CPSF1	100	96.387	Canis_familiaris
ENSMUSG00000034022	Cpsf1	100	96.468	ENSCAFG00020020821	CPSF1	100	96.468	Canis_lupus_dingo
ENSMUSG00000034022	Cpsf1	100	90.638	ENSCHIG00000015833	CPSF1	100	90.638	Capra_hircus
ENSMUSG00000034022	Cpsf1	100	97.295	ENSTSYG00000028560	CPSF1	100	97.295	Carlito_syrichta
ENSMUSG00000034022	Cpsf1	97	96.341	ENSCAPG00000014921	CPSF1	99	96.341	Cavia_aperea
ENSMUSG00000034022	Cpsf1	100	95.908	ENSCPOG00000011448	CPSF1	100	95.908	Cavia_porcellus
ENSMUSG00000034022	Cpsf1	100	96.741	ENSCCAG00000037658	CPSF1	100	96.741	Cebus_capucinus
ENSMUSG00000034022	Cpsf1	100	96.394	ENSCATG00000037234	CPSF1	99	97.910	Cercocebus_atys
ENSMUSG00000034022	Cpsf1	100	97.779	ENSCLAG00000012166	CPSF1	100	97.779	Chinchilla_lanigera
ENSMUSG00000034022	Cpsf1	100	96.533	ENSCSAG00000008502	CPSF1	100	96.533	Chlorocebus_sabaeus
ENSMUSG00000034022	Cpsf1	99	88.025	ENSCPBG00000018910	CPSF1	96	88.087	Chrysemys_picta_bellii
ENSMUSG00000034022	Cpsf1	96	48.672	ENSCING00000000514	-	100	48.600	Ciona_intestinalis
ENSMUSG00000034022	Cpsf1	99	48.454	ENSCSAVG00000002293	-	98	49.765	Ciona_savignyi
ENSMUSG00000034022	Cpsf1	99	90.903	ENSCANG00000032760	CPSF1	99	90.903	Colobus_angolensis_palliatus
ENSMUSG00000034022	Cpsf1	100	98.820	ENSCGRG00001016344	Cpsf1	100	98.820	Cricetulus_griseus_chok1gshd
ENSMUSG00000034022	Cpsf1	100	96.322	ENSCGRG00000003118	Cpsf1	100	96.322	Cricetulus_griseus_crigri
ENSMUSG00000034022	Cpsf1	100	77.755	ENSCSEG00000013464	cpsf1	100	77.963	Cynoglossus_semilaevis
ENSMUSG00000034022	Cpsf1	85	77.133	ENSCVAG00000014059	cpsf1	100	75.926	Cyprinodon_variegatus
ENSMUSG00000034022	Cpsf1	100	79.256	ENSDARG00000034178	cpsf1	100	79.325	Danio_rerio
ENSMUSG00000034022	Cpsf1	57	96.232	ENSDNOG00000043654	CPSF1	96	91.153	Dasypus_novemcinctus
ENSMUSG00000034022	Cpsf1	97	97.059	ENSDORG00000006278	Cpsf1	99	97.059	Dipodomys_ordii
ENSMUSG00000034022	Cpsf1	100	44.983	FBgn0024698	Cpsf160	100	45.027	Drosophila_melanogaster
ENSMUSG00000034022	Cpsf1	80	98.658	ENSETEG00000006022	CPSF1	83	98.658	Echinops_telfairi
ENSMUSG00000034022	Cpsf1	70	71.765	ENSEBUG00000006844	-	97	74.803	Eptatretus_burgeri
ENSMUSG00000034022	Cpsf1	100	97.091	ENSEASG00005010774	CPSF1	100	97.091	Equus_asinus_asinus
ENSMUSG00000034022	Cpsf1	100	97.091	ENSECAG00000022209	CPSF1	100	97.091	Equus_caballus
ENSMUSG00000034022	Cpsf1	100	94.671	ENSEEUG00000000471	CPSF1	100	94.671	Erinaceus_europaeus
ENSMUSG00000034022	Cpsf1	100	77.724	ENSELUG00000012271	cpsf1	100	78.204	Esox_lucius
ENSMUSG00000034022	Cpsf1	100	97.641	ENSFDAG00000016060	CPSF1	100	97.641	Fukomys_damarensis
ENSMUSG00000034022	Cpsf1	100	77.050	ENSFHEG00000016801	cpsf1	100	77.119	Fundulus_heteroclitus
ENSMUSG00000034022	Cpsf1	100	78.153	ENSGMOG00000000796	cpsf1	100	78.360	Gadus_morhua
ENSMUSG00000034022	Cpsf1	95	85.714	ENSGAFG00000018890	cpsf1	100	85.714	Gambusia_affinis
ENSMUSG00000034022	Cpsf1	100	78.611	ENSGACG00000008703	cpsf1	100	78.601	Gasterosteus_aculeatus
ENSMUSG00000034022	Cpsf1	100	84.360	ENSGAGG00000004276	CPSF1	98	88.077	Gopherus_agassizii
ENSMUSG00000034022	Cpsf1	100	96.600	ENSGGOG00000016185	CPSF1	100	96.600	Gorilla_gorilla
ENSMUSG00000034022	Cpsf1	99	53.704	ENSGGOG00000040487	-	100	70.370	Gorilla_gorilla
ENSMUSG00000034022	Cpsf1	100	79.917	ENSHBUG00000018900	cpsf1	100	80.055	Haplochromis_burtoni
ENSMUSG00000034022	Cpsf1	100	97.641	ENSHGLG00000016139	CPSF1	100	97.641	Heterocephalus_glaber_female
ENSMUSG00000034022	Cpsf1	100	97.571	ENSHGLG00100009750	CPSF1	100	97.571	Heterocephalus_glaber_male
ENSMUSG00000034022	Cpsf1	100	77.273	ENSHCOG00000018509	cpsf1	100	77.189	Hippocampus_comes
ENSMUSG00000034022	Cpsf1	100	76.272	ENSIPUG00000011259	cpsf1	100	76.272	Ictalurus_punctatus
ENSMUSG00000034022	Cpsf1	97	97.069	ENSSTOG00000009957	CPSF1	99	97.069	Ictidomys_tridecemlineatus
ENSMUSG00000034022	Cpsf1	100	97.779	ENSJJAG00000023002	Cpsf1	100	97.779	Jaculus_jaculus
ENSMUSG00000034022	Cpsf1	91	85.893	ENSKMAG00000001940	cpsf1	99	85.893	Kryptolebias_marmoratus
ENSMUSG00000034022	Cpsf1	100	77.454	ENSLBEG00000003601	cpsf1	100	77.913	Labrus_bergylta
ENSMUSG00000034022	Cpsf1	88	81.611	ENSLACG00000000233	CPSF1	92	81.611	Latimeria_chalumnae
ENSMUSG00000034022	Cpsf1	100	78.522	ENSLOCG00000008484	cpsf1	100	78.798	Lepisosteus_oculatus
ENSMUSG00000034022	Cpsf1	97	95.490	ENSLAFG00000022601	CPSF1	100	95.490	Loxodonta_africana
ENSMUSG00000034022	Cpsf1	100	96.394	ENSMFAG00000037013	CPSF1	99	97.612	Macaca_fascicularis
ENSMUSG00000034022	Cpsf1	100	96.463	ENSMMUG00000007380	CPSF1	100	96.463	Macaca_mulatta
ENSMUSG00000034022	Cpsf1	97	96.485	ENSMNEG00000043564	CPSF1	100	96.485	Macaca_nemestrina
ENSMUSG00000034022	Cpsf1	100	96.394	ENSMLEG00000043010	CPSF1	99	97.612	Mandrillus_leucophaeus
ENSMUSG00000034022	Cpsf1	100	78.567	ENSMAMG00000003803	cpsf1	100	78.769	Mastacembelus_armatus
ENSMUSG00000034022	Cpsf1	100	77.770	ENSMZEG00005001168	cpsf1	100	77.909	Maylandia_zebra
ENSMUSG00000034022	Cpsf1	100	98.820	ENSMAUG00000003601	Cpsf1	100	98.820	Mesocricetus_auratus
ENSMUSG00000034022	Cpsf1	100	97.294	ENSMICG00000015767	CPSF1	100	97.294	Microcebus_murinus
ENSMUSG00000034022	Cpsf1	100	98.681	ENSMOCG00000022758	Cpsf1	100	98.681	Microtus_ochrogaster
ENSMUSG00000034022	Cpsf1	100	79.170	ENSMMOG00000021245	cpsf1	100	79.308	Mola_mola
ENSMUSG00000034022	Cpsf1	100	93.099	ENSMODG00000010755	CPSF1	100	93.099	Monodelphis_domestica
ENSMUSG00000034022	Cpsf1	100	77.590	ENSMALG00000020545	cpsf1	100	77.793	Monopterus_albus
ENSMUSG00000034022	Cpsf1	100	99.861	MGP_CAROLIEiJ_G0019936	Cpsf1	100	99.861	Mus_caroli
ENSMUSG00000034022	Cpsf1	100	99.514	MGP_PahariEiJ_G0019946	Cpsf1	100	99.514	Mus_pahari
ENSMUSG00000034022	Cpsf1	100	99.931	MGP_SPRETEiJ_G0020839	Cpsf1	100	99.931	Mus_spretus
ENSMUSG00000034022	Cpsf1	94	95.923	ENSMPUG00000006419	CPSF1	93	95.994	Mustela_putorius_furo
ENSMUSG00000034022	Cpsf1	87	65.605	ENSMLUG00000000667	-	100	97.222	Myotis_lucifugus
ENSMUSG00000034022	Cpsf1	100	97.918	ENSNGAG00000022460	Cpsf1	100	97.918	Nannospalax_galili
ENSMUSG00000034022	Cpsf1	100	75.087	ENSNBRG00000000813	cpsf1	100	75.087	Neolamprologus_brichardi
ENSMUSG00000034022	Cpsf1	81	97.452	ENSNLEG00000010633	-	94	97.452	Nomascus_leucogenys
ENSMUSG00000034022	Cpsf1	82	98.256	ENSMEUG00000014922	CPSF1	85	98.256	Notamacropus_eugenii
ENSMUSG00000034022	Cpsf1	85	85.437	ENSOPRG00000004693	-	71	96.939	Ochotona_princeps
ENSMUSG00000034022	Cpsf1	100	97.918	ENSODEG00000013995	CPSF1	100	97.918	Octodon_degus
ENSMUSG00000034022	Cpsf1	100	80.263	ENSONIG00000007676	cpsf1	100	80.402	Oreochromis_niloticus
ENSMUSG00000034022	Cpsf1	58	92.857	ENSOANG00000010716	CPSF1	88	92.857	Ornithorhynchus_anatinus
ENSMUSG00000034022	Cpsf1	100	77.634	ENSORLG00000013544	cpsf1	92	86.831	Oryzias_latipes
ENSMUSG00000034022	Cpsf1	100	77.770	ENSORLG00020021693	cpsf1	92	86.831	Oryzias_latipes_hni
ENSMUSG00000034022	Cpsf1	100	77.619	ENSORLG00015009979	cpsf1	100	77.687	Oryzias_latipes_hsok
ENSMUSG00000034022	Cpsf1	100	77.793	ENSOMEG00000011849	cpsf1	100	77.997	Oryzias_melastigma
ENSMUSG00000034022	Cpsf1	100	97.087	ENSOGAG00000000315	CPSF1	100	97.087	Otolemur_garnettii
ENSMUSG00000034022	Cpsf1	100	96.602	ENSPPAG00000019280	CPSF1	100	96.602	Pan_paniscus
ENSMUSG00000034022	Cpsf1	100	96.602	ENSPTRG00000049288	-	100	96.602	Pan_troglodytes
ENSMUSG00000034022	Cpsf1	99	96.366	ENSPTRG00000051253	-	100	94.956	Pan_troglodytes
ENSMUSG00000034022	Cpsf1	99	51.534	ENSPTRG00000052516	-	100	68.981	Pan_troglodytes
ENSMUSG00000034022	Cpsf1	97	96.341	ENSPANG00000015005	CPSF1	100	96.341	Papio_anubis
ENSMUSG00000034022	Cpsf1	100	80.415	ENSPKIG00000002582	cpsf1	100	80.956	Paramormyrops_kingsleyae
ENSMUSG00000034022	Cpsf1	99	59.884	ENSPMGG00000022177	-	100	84.259	Periophthalmus_magnuspinnatus
ENSMUSG00000034022	Cpsf1	100	93.030	ENSPCIG00000009035	CPSF1	100	93.030	Phascolarctos_cinereus
ENSMUSG00000034022	Cpsf1	100	76.506	ENSPFOG00000012870	cpsf1	100	76.506	Poecilia_formosa
ENSMUSG00000034022	Cpsf1	100	76.319	ENSPREG00000016307	cpsf1	100	76.319	Poecilia_reticulata
ENSMUSG00000034022	Cpsf1	100	88.627	ENSPPYG00000018973	CPSF1	100	88.627	Pongo_abelii
ENSMUSG00000034022	Cpsf1	91	95.170	ENSPCAG00000011541	CPSF1	94	95.170	Procavia_capensis
ENSMUSG00000034022	Cpsf1	100	93.412	ENSPCOG00000020001	CPSF1	100	93.412	Propithecus_coquereli
ENSMUSG00000034022	Cpsf1	91	99.143	ENSPVAG00000006761	CPSF1	91	99.143	Pteropus_vampyrus
ENSMUSG00000034022	Cpsf1	100	78.879	ENSPNYG00000004906	cpsf1	100	79.016	Pundamilia_nyererei
ENSMUSG00000034022	Cpsf1	100	74.983	ENSPNAG00000024395	cpsf1	100	74.983	Pygocentrus_nattereri
ENSMUSG00000034022	Cpsf1	100	99.306	ENSRNOG00000030705	Cpsf1	100	99.306	Rattus_norvegicus
ENSMUSG00000034022	Cpsf1	100	96.533	ENSRBIG00000044907	CPSF1	100	96.533	Rhinopithecus_bieti
ENSMUSG00000034022	Cpsf1	100	96.463	ENSRROG00000044861	CPSF1	100	96.463	Rhinopithecus_roxellana
ENSMUSG00000034022	Cpsf1	97	96.485	ENSSBOG00000027177	CPSF1	100	96.485	Saimiri_boliviensis_boliviensis
ENSMUSG00000034022	Cpsf1	100	93.030	ENSSHAG00000006500	CPSF1	100	93.030	Sarcophilus_harrisii
ENSMUSG00000034022	Cpsf1	100	78.153	ENSSFOG00015004606	cpsf1	100	81.441	Scleropages_formosus
ENSMUSG00000034022	Cpsf1	100	77.996	ENSSMAG00000020547	cpsf1	100	78.131	Scophthalmus_maximus
ENSMUSG00000034022	Cpsf1	100	79.391	ENSSDUG00000001100	cpsf1	100	79.737	Seriola_dumerili
ENSMUSG00000034022	Cpsf1	100	79.654	ENSSLDG00000003619	cpsf1	100	79.723	Seriola_lalandi_dorsalis
ENSMUSG00000034022	Cpsf1	89	97.917	ENSSARG00000003643	CPSF1	92	97.917	Sorex_araneus
ENSMUSG00000034022	Cpsf1	96	88.104	ENSSPUG00000014396	CPSF1	100	88.104	Sphenodon_punctatus
ENSMUSG00000034022	Cpsf1	100	78.214	ENSSPAG00000005349	cpsf1	100	78.417	Stegastes_partitus
ENSMUSG00000034022	Cpsf1	100	95.637	ENSSSCG00000005906	CPSF1	100	95.637	Sus_scrofa
ENSMUSG00000034022	Cpsf1	96	78.237	ENSTRUG00000013134	cpsf1	99	78.376	Takifugu_rubripes
ENSMUSG00000034022	Cpsf1	100	78.832	ENSTNIG00000014027	cpsf1	100	78.900	Tetraodon_nigroviridis
ENSMUSG00000034022	Cpsf1	77	88.966	ENSTBEG00000001756	CPSF1	91	88.966	Tupaia_belangeri
ENSMUSG00000034022	Cpsf1	90	97.237	ENSTTRG00000001937	CPSF1	90	97.237	Tursiops_truncatus
ENSMUSG00000034022	Cpsf1	97	96.567	ENSUAMG00000006476	CPSF1	98	96.567	Ursus_americanus
ENSMUSG00000034022	Cpsf1	99	69.186	ENSVVUG00000005940	-	100	89.815	Vulpes_vulpes
ENSMUSG00000034022	Cpsf1	100	77.509	ENSXCOG00000003608	cpsf1	100	77.716	Xiphophorus_couchianus
ENSMUSG00000034022	Cpsf1	100	77.093	ENSXMAG00000005798	cpsf1	100	77.301	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	21873635.	IBA	Component
GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	-	ISO	Component
GO:0006378	mRNA polyadenylation	21873635.	IBA	Process
GO:0006378	mRNA polyadenylation	-	ISO	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0019899	enzyme binding	-	ISO	Function
GO:0035925	mRNA 3'-UTR AU-rich region binding	-	ISO	Function