EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000034163 (Gene tree)
Gene ID: 216345
Gene Symbol: Zfc3h1
Alias: Ccdc131|Psrc2
Full Name: zinc finger%2C C3H1-type containing
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 47814 bases
Position: chr10:115384959-115432772
Accession: 2446143
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000044069	zf-C3H1	PF10650.9	6.6e-08	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000036044	-	6957	XM_006513538	ENSMUSP00000044069	1992 (aa)	XP_006513601	B2RT41
ENSMUST00000143751	-	677	-	-	- (aa)	-	-
ENSMUST00000127283	-	1546	-	-	- (aa)	-	-
ENSMUST00000141246	-	424	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000034163's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000034163's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000034163	Zfc3h1	99	91.215	ENSG00000133858	ZFC3H1	99	90.658	Homo_sapiens
ENSMUSG00000034163	Zfc3h1	99	91.023	ENSAMEG00000000498	ZFC3H1	99	90.718	Ailuropoda_melanoleuca
ENSMUSG00000034163	Zfc3h1	98	44.368	ENSACIG00000015672	ZFC3H1	95	45.389	Amphilophus_citrinellus
ENSMUSG00000034163	Zfc3h1	98	49.687	ENSAOCG00000022567	ZFC3H1	92	48.660	Amphiprion_ocellaris
ENSMUSG00000034163	Zfc3h1	94	50.372	ENSATEG00000015391	ZFC3H1	91	50.530	Anabas_testudineus
ENSMUSG00000034163	Zfc3h1	90	72.176	ENSAPLG00000016116	ZFC3H1	99	71.898	Anas_platyrhynchos
ENSMUSG00000034163	Zfc3h1	99	67.182	ENSACAG00000007327	ZFC3H1	96	68.252	Anolis_carolinensis
ENSMUSG00000034163	Zfc3h1	99	90.612	ENSANAG00000038329	ZFC3H1	99	90.055	Aotus_nancymaae
ENSMUSG00000034163	Zfc3h1	84	49.605	ENSACLG00000021274	ZFC3H1	87	48.705	Astatotilapia_calliptera
ENSMUSG00000034163	Zfc3h1	95	46.300	ENSAMXG00000042831	-	98	46.285	Astyanax_mexicanus
ENSMUSG00000034163	Zfc3h1	99	91.165	ENSBTAG00000012267	ZFC3H1	99	90.457	Bos_taurus
ENSMUSG00000034163	Zfc3h1	99	90.813	ENSCJAG00000001384	ZFC3H1	99	90.256	Callithrix_jacchus
ENSMUSG00000034163	Zfc3h1	99	89.678	ENSCAFG00000000453	ZFC3H1	96	91.323	Canis_familiaris
ENSMUSG00000034163	Zfc3h1	99	89.728	ENSCAFG00020016502	ZFC3H1	99	89.289	Canis_lupus_dingo
ENSMUSG00000034163	Zfc3h1	99	91.114	ENSCHIG00000020097	ZFC3H1	99	90.507	Capra_hircus
ENSMUSG00000034163	Zfc3h1	99	89.323	ENSTSYG00000005471	ZFC3H1	99	88.616	Carlito_syrichta
ENSMUSG00000034163	Zfc3h1	99	87.161	ENSCPOG00000009504	ZFC3H1	99	86.553	Cavia_porcellus
ENSMUSG00000034163	Zfc3h1	99	90.713	ENSCCAG00000035967	ZFC3H1	99	90.156	Cebus_capucinus
ENSMUSG00000034163	Zfc3h1	99	91.064	ENSCATG00000016321	ZFC3H1	99	90.507	Cercocebus_atys
ENSMUSG00000034163	Zfc3h1	99	91.224	ENSCLAG00000007646	ZFC3H1	99	90.416	Chinchilla_lanigera
ENSMUSG00000034163	Zfc3h1	99	90.914	ENSCSAG00000004100	ZFC3H1	99	90.357	Chlorocebus_sabaeus
ENSMUSG00000034163	Zfc3h1	99	72.314	ENSCPBG00000013449	ZFC3H1	91	74.896	Chrysemys_picta_bellii
ENSMUSG00000034163	Zfc3h1	99	91.064	ENSCANG00000030229	ZFC3H1	99	90.507	Colobus_angolensis_palliatus
ENSMUSG00000034163	Zfc3h1	99	90.075	ENSCGRG00001011660	Zfc3h1	99	89.925	Cricetulus_griseus_chok1gshd
ENSMUSG00000034163	Zfc3h1	90	94.852	ENSCGRG00000006894	Zfc3h1	99	94.852	Cricetulus_griseus_crigri
ENSMUSG00000034163	Zfc3h1	92	40.274	ENSCSEG00000021462	ZFC3H1	95	41.020	Cynoglossus_semilaevis
ENSMUSG00000034163	Zfc3h1	99	90.311	ENSDNOG00000010314	ZFC3H1	99	90.105	Dasypus_novemcinctus
ENSMUSG00000034163	Zfc3h1	83	39.767	ENSEBUG00000003491	-	61	40.398	Eptatretus_burgeri
ENSMUSG00000034163	Zfc3h1	99	90.262	ENSEASG00005008229	ZFC3H1	99	89.608	Equus_asinus_asinus
ENSMUSG00000034163	Zfc3h1	99	90.313	ENSECAG00000026833	ZFC3H1	99	89.659	Equus_caballus
ENSMUSG00000034163	Zfc3h1	99	46.804	ENSELUG00000013421	-	92	51.410	Esox_lucius
ENSMUSG00000034163	Zfc3h1	99	91.261	ENSFCAG00000024198	ZFC3H1	99	91.060	Felis_catus
ENSMUSG00000034163	Zfc3h1	99	69.387	ENSFALG00000010320	ZFC3H1	95	71.846	Ficedula_albicollis
ENSMUSG00000034163	Zfc3h1	99	90.663	ENSFDAG00000017503	ZFC3H1	99	90.261	Fukomys_damarensis
ENSMUSG00000034163	Zfc3h1	86	49.894	ENSGMOG00000004527	-	85	49.678	Gadus_morhua
ENSMUSG00000034163	Zfc3h1	99	71.199	ENSGALG00000010177	ZFC3H1	96	72.751	Gallus_gallus
ENSMUSG00000034163	Zfc3h1	68	48.100	ENSGAFG00000013283	-	96	48.552	Gambusia_affinis
ENSMUSG00000034163	Zfc3h1	99	46.893	ENSGACG00000007651	ZFC3H1	96	47.918	Gasterosteus_aculeatus
ENSMUSG00000034163	Zfc3h1	99	71.687	ENSGAGG00000013798	ZFC3H1	96	74.584	Gopherus_agassizii
ENSMUSG00000034163	Zfc3h1	99	90.914	ENSGGOG00000025994	ZFC3H1	99	90.407	Gorilla_gorilla
ENSMUSG00000034163	Zfc3h1	99	90.617	ENSHGLG00000014297	ZFC3H1	99	90.416	Heterocephalus_glaber_female
ENSMUSG00000034163	Zfc3h1	99	90.467	ENSHGLG00100006263	ZFC3H1	99	90.266	Heterocephalus_glaber_male
ENSMUSG00000034163	Zfc3h1	53	47.761	ENSHCOG00000009144	-	74	48.756	Hippocampus_comes
ENSMUSG00000034163	Zfc3h1	99	91.763	ENSSTOG00000002650	ZFC3H1	99	91.612	Ictidomys_tridecemlineatus
ENSMUSG00000034163	Zfc3h1	76	48.196	ENSKMAG00000021476	-	76	48.120	Kryptolebias_marmoratus
ENSMUSG00000034163	Zfc3h1	79	48.387	ENSLBEG00000012352	-	81	54.274	Labrus_bergylta
ENSMUSG00000034163	Zfc3h1	95	61.788	ENSLACG00000002585	ZFC3H1	95	62.031	Latimeria_chalumnae
ENSMUSG00000034163	Zfc3h1	99	56.374	ENSLOCG00000016238	ZFC3H1	98	56.615	Lepisosteus_oculatus
ENSMUSG00000034163	Zfc3h1	90	91.601	ENSLAFG00000005820	ZFC3H1	100	90.000	Loxodonta_africana
ENSMUSG00000034163	Zfc3h1	99	91.165	ENSMFAG00000039403	ZFC3H1	99	90.608	Macaca_fascicularis
ENSMUSG00000034163	Zfc3h1	99	91.165	ENSMMUG00000020943	ZFC3H1	99	90.608	Macaca_mulatta
ENSMUSG00000034163	Zfc3h1	99	91.114	ENSMNEG00000008807	ZFC3H1	99	90.558	Macaca_nemestrina
ENSMUSG00000034163	Zfc3h1	99	91.064	ENSMLEG00000029967	ZFC3H1	99	90.507	Mandrillus_leucophaeus
ENSMUSG00000034163	Zfc3h1	99	51.140	ENSMAMG00000021320	ZFC3H1	88	50.703	Mastacembelus_armatus
ENSMUSG00000034163	Zfc3h1	90	73.167	ENSMGAG00000010716	ZFC3H1	100	73.333	Meleagris_gallopavo
ENSMUSG00000034163	Zfc3h1	99	91.114	ENSMICG00000009137	ZFC3H1	99	90.558	Microcebus_murinus
ENSMUSG00000034163	Zfc3h1	99	79.052	ENSMODG00000020408	ZFC3H1	95	80.499	Monodelphis_domestica
ENSMUSG00000034163	Zfc3h1	100	98.000	MGP_CAROLIEiJ_G0015814	Zfc3h1	100	98.000	Mus_caroli
ENSMUSG00000034163	Zfc3h1	99	95.557	MGP_PahariEiJ_G0031273	Zfc3h1	99	95.557	Mus_pahari
ENSMUSG00000034163	Zfc3h1	100	99.498	MGP_SPRETEiJ_G0016636	Zfc3h1	100	99.498	Mus_spretus
ENSMUSG00000034163	Zfc3h1	99	91.160	ENSMPUG00000017488	ZFC3H1	99	90.959	Mustela_putorius_furo
ENSMUSG00000034163	Zfc3h1	99	87.820	ENSMLUG00000011723	ZFC3H1	99	87.747	Myotis_lucifugus
ENSMUSG00000034163	Zfc3h1	99	90.708	ENSNGAG00000017623	Zfc3h1	99	90.055	Nannospalax_galili
ENSMUSG00000034163	Zfc3h1	99	90.512	ENSNLEG00000004372	ZFC3H1	99	89.955	Nomascus_leucogenys
ENSMUSG00000034163	Zfc3h1	77	87.798	ENSOPRG00000008075	ZFC3H1	77	87.798	Ochotona_princeps
ENSMUSG00000034163	Zfc3h1	52	47.858	ENSONIG00000018271	ZFC3H1	99	48.138	Oreochromis_niloticus
ENSMUSG00000034163	Zfc3h1	99	90.708	ENSOCUG00000004591	ZFC3H1	99	90.507	Oryctolagus_cuniculus
ENSMUSG00000034163	Zfc3h1	83	47.911	ENSORLG00000000155	-	86	47.434	Oryzias_latipes
ENSMUSG00000034163	Zfc3h1	83	47.911	ENSORLG00015020699	-	85	47.310	Oryzias_latipes_hsok
ENSMUSG00000034163	Zfc3h1	94	47.355	ENSOMEG00000015403	-	82	47.756	Oryzias_melastigma
ENSMUSG00000034163	Zfc3h1	99	89.980	ENSOGAG00000033606	ZFC3H1	99	89.424	Otolemur_garnettii
ENSMUSG00000034163	Zfc3h1	99	91.114	ENSOARG00000014589	ZFC3H1	99	90.452	Ovis_aries
ENSMUSG00000034163	Zfc3h1	99	91.064	ENSPPAG00000029409	ZFC3H1	99	90.507	Pan_paniscus
ENSMUSG00000034163	Zfc3h1	99	91.210	ENSPPRG00000010196	ZFC3H1	99	91.010	Panthera_pardus
ENSMUSG00000034163	Zfc3h1	99	91.210	ENSPTIG00000006898	ZFC3H1	99	91.010	Panthera_tigris_altaica
ENSMUSG00000034163	Zfc3h1	99	91.114	ENSPTRG00000005224	ZFC3H1	99	90.558	Pan_troglodytes
ENSMUSG00000034163	Zfc3h1	99	88.805	ENSPANG00000009558	ZFC3H1	99	88.247	Papio_anubis
ENSMUSG00000034163	Zfc3h1	99	51.499	ENSPKIG00000023219	ZFC3H1	96	51.666	Paramormyrops_kingsleyae
ENSMUSG00000034163	Zfc3h1	99	72.102	ENSPSIG00000012997	ZFC3H1	99	76.638	Pelodiscus_sinensis
ENSMUSG00000034163	Zfc3h1	93	45.675	ENSPMGG00000007504	ZFC3H1	94	48.117	Periophthalmus_magnuspinnatus
ENSMUSG00000034163	Zfc3h1	99	79.110	ENSPCIG00000025066	ZFC3H1	96	80.967	Phascolarctos_cinereus
ENSMUSG00000034163	Zfc3h1	89	46.575	ENSPMEG00000007517	-	95	43.952	Poecilia_mexicana
ENSMUSG00000034163	Zfc3h1	99	91.014	ENSPPYG00000004773	ZFC3H1	99	90.457	Pongo_abelii
ENSMUSG00000034163	Zfc3h1	90	85.011	ENSPCAG00000003723	ZFC3H1	90	84.275	Procavia_capensis
ENSMUSG00000034163	Zfc3h1	99	90.813	ENSPCOG00000019879	ZFC3H1	99	90.256	Propithecus_coquereli
ENSMUSG00000034163	Zfc3h1	96	87.649	ENSPVAG00000012354	ZFC3H1	96	87.649	Pteropus_vampyrus
ENSMUSG00000034163	Zfc3h1	92	49.587	ENSPNYG00000005977	ZFC3H1	85	48.745	Pundamilia_nyererei
ENSMUSG00000034163	Zfc3h1	91	48.984	ENSPNAG00000017704	-	97	46.162	Pygocentrus_nattereri
ENSMUSG00000034163	Zfc3h1	93	87.459	ENSRNOG00000053060	Zfc3h1	99	87.351	Rattus_norvegicus
ENSMUSG00000034163	Zfc3h1	99	88.454	ENSRBIG00000028462	ZFC3H1	99	87.896	Rhinopithecus_bieti
ENSMUSG00000034163	Zfc3h1	99	91.014	ENSRROG00000040039	ZFC3H1	99	90.457	Rhinopithecus_roxellana
ENSMUSG00000034163	Zfc3h1	99	89.659	ENSSBOG00000032676	ZFC3H1	99	88.950	Saimiri_boliviensis_boliviensis
ENSMUSG00000034163	Zfc3h1	99	78.056	ENSSHAG00000002431	ZFC3H1	98	80.935	Sarcophilus_harrisii
ENSMUSG00000034163	Zfc3h1	92	51.883	ENSSFOG00015018112	ZFC3H1	95	52.970	Scleropages_formosus
ENSMUSG00000034163	Zfc3h1	79	49.139	ENSSMAG00000019783	ZFC3H1	94	48.735	Scophthalmus_maximus
ENSMUSG00000034163	Zfc3h1	94	50.831	ENSSDUG00000000244	ZFC3H1	93	50.367	Seriola_dumerili
ENSMUSG00000034163	Zfc3h1	87	50.488	ENSSLDG00000018408	ZFC3H1	92	50.853	Seriola_lalandi_dorsalis
ENSMUSG00000034163	Zfc3h1	78	92.644	ENSSARG00000008639	ZFC3H1	85	87.083	Sorex_araneus
ENSMUSG00000034163	Zfc3h1	82	49.244	ENSSPAG00000001916	-	88	49.759	Stegastes_partitus
ENSMUSG00000034163	Zfc3h1	99	90.457	ENSSSCG00000000509	ZFC3H1	99	92.074	Sus_scrofa
ENSMUSG00000034163	Zfc3h1	100	69.645	ENSTGUG00000007206	ZFC3H1	100	70.729	Taeniopygia_guttata
ENSMUSG00000034163	Zfc3h1	60	48.268	ENSTRUG00000004528	-	89	47.968	Takifugu_rubripes
ENSMUSG00000034163	Zfc3h1	83	94.118	ENSTBEG00000016441	ZFC3H1	84	94.118	Tupaia_belangeri
ENSMUSG00000034163	Zfc3h1	99	88.800	ENSTTRG00000007328	ZFC3H1	99	88.649	Tursiops_truncatus
ENSMUSG00000034163	Zfc3h1	99	91.210	ENSUAMG00000001880	ZFC3H1	99	91.160	Ursus_americanus
ENSMUSG00000034163	Zfc3h1	99	90.553	ENSUMAG00000021131	ZFC3H1	99	90.553	Ursus_maritimus
ENSMUSG00000034163	Zfc3h1	90	92.346	ENSVVUG00000008655	ZFC3H1	99	92.346	Vulpes_vulpes
ENSMUSG00000034163	Zfc3h1	95	58.008	ENSXETG00000033302	ZFC3H1	99	57.068	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000178	exosome (RNase complex)	-	ISO	Component
GO:0005634	nucleus	-	ISO	Component
GO:0008150	biological_process	-	ND	Process