EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000034274 (Gene tree)
Gene ID: 107829
Gene Symbol: Thoc5
Alias: 1700060C24Rik|A430085L24Rik|Fmip|PK1.3
Full Name: THO complex 5
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 33548
Position: chr11: 4895320-4928867
Accession: 1351333
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000101615	-	2116	-	ENSMUSP00000099137	635 (aa)	-	Q5SVF9
ENSMUST00000144371	-	770	-	-	- (aa)	-	-
ENSMUST00000142543	-	1082	-	ENSMUSP00000118940	300 (aa)	-	Q5SVF8
ENSMUST00000148117	-	592	-	-	- (aa)	-	-
ENSMUST00000155872	-	600	-	-	- (aa)	-	-
ENSMUST00000038237	-	2235	XM_006514448	ENSMUSP00000045580	683 (aa)	XP_006514511	A0A0R4J0J6

Gene Model

Click here to download ENSMUSG00000034274's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000034274's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000034274	Thoc5	100	96.047	ENSG00000100296	THOC5	100	96.894	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000228	nuclear chromosome	21873635.	IBA	Component
GO:0000346	transcription export complex	-	ISO	Component
GO:0000347	THO complex	-	ISO	Component
GO:0000445	THO complex part of transcription export complex	21873635.	IBA	Component
GO:0000445	THO complex part of transcription export complex	-	ISO	Component
GO:0000784	nuclear chromosome, telomeric region	-	ISO	Component
GO:0000902	cell morphogenesis	24315442.	IMP	Process
GO:0001824	blastocyst development	24315442.	IMP	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	24315442.	IMP	Function
GO:0005515	protein binding	10597251.24315442.	IPI	Function
GO:0005634	nucleus	24315442.	IDA	Component
GO:0005634	nucleus	15221008.	IMP	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0006406	mRNA export from nucleus	21873635.	IBA	Process
GO:0006406	mRNA export from nucleus	-	ISO	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0010468	regulation of gene expression	24315442.	IMP	Process
GO:0010793	regulation of mRNA export from nucleus	24315442.	IMP	Process
GO:0017145	stem cell division	24315442.	IMP	Process
GO:0030154	cell differentiation	-	IEA	Process
GO:0030224	monocyte differentiation	-	ISO	Process
GO:0032786	positive regulation of DNA-templated transcription, elongation	21873635.	IBA	Process
GO:0032786	positive regulation of DNA-templated transcription, elongation	-	ISO	Process
GO:0045650	negative regulation of macrophage differentiation	10597251.	IDA	Process
GO:0046784	viral mRNA export from host cell nucleus	-	ISO	Process
GO:0051028	mRNA transport	-	IEA	Process
GO:0060215	primitive hemopoiesis	20051105.	IMP	Process
GO:2000002	negative regulation of DNA damage checkpoint	-	ISO	Process
GO:2000035	regulation of stem cell division	24315442.	IMP	Process