EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000034321 (Gene tree)
Gene ID: 66583
Gene Symbol: Exosc1
Alias: 2610035C18Rik|2610104C07Rik|2610312F07Rik
Full Name: exosome component 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 10335 bases
Position: chr19:41922980-41933314
Accession: 1913833
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000074756	EXOSC1	PF10447.9	1.3e-14	1	1
ENSMUSP00000107751	ECR1_N	PF14382.6	1e-08	1	1
ENSMUSP00000074756	ECR1_N	PF14382.6	1.4e-08	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000112123	-	1499	-	ENSMUSP00000107751	154 (aa)	-	Q9DAA6
ENSMUST00000075280	-	1622	XM_011247312	ENSMUSP00000074756	195 (aa)	XP_011245614	Q9DAA6

Gene Model

Click here to download ENSMUSG00000034321's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000034321's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000034321	Exosc1	100	96.753	ENSG00000171311	EXOSC1	100	95.897	Homo_sapiens
ENSMUSG00000034321	Exosc1	98	78.534	ENSAPOG00000007822	exosc1	98	78.534	Acanthochromis_polyacanthus
ENSMUSG00000034321	Exosc1	100	96.410	ENSAMEG00000000129	EXOSC1	100	96.410	Ailuropoda_melanoleuca
ENSMUSG00000034321	Exosc1	96	78.191	ENSACIG00000018956	exosc1	92	78.191	Amphilophus_citrinellus
ENSMUSG00000034321	Exosc1	98	78.534	ENSAOCG00000010699	exosc1	98	78.534	Amphiprion_ocellaris
ENSMUSG00000034321	Exosc1	92	69.274	ENSAPEG00000012690	exosc1	96	69.274	Amphiprion_percula
ENSMUSG00000034321	Exosc1	98	78.010	ENSATEG00000018683	exosc1	98	78.010	Anabas_testudineus
ENSMUSG00000034321	Exosc1	99	85.492	ENSACAG00000002101	EXOSC1	99	85.492	Anolis_carolinensis
ENSMUSG00000034321	Exosc1	100	98.052	ENSANAG00000034669	EXOSC1	100	98.052	Aotus_nancymaae
ENSMUSG00000034321	Exosc1	98	78.534	ENSACLG00000021243	exosc1	98	78.534	Astatotilapia_calliptera
ENSMUSG00000034321	Exosc1	98	80.105	ENSAMXG00000011116	exosc1	98	80.105	Astyanax_mexicanus
ENSMUSG00000034321	Exosc1	100	96.923	ENSBTAG00000012699	EXOSC1	100	96.923	Bos_taurus
ENSMUSG00000034321	Exosc1	92	32.979	WBGene00012966	exos-1	90	32.979	Caenorhabditis_elegans
ENSMUSG00000034321	Exosc1	100	98.052	ENSCJAG00000016586	EXOSC1	100	98.052	Callithrix_jacchus
ENSMUSG00000034321	Exosc1	100	95.897	ENSCAFG00000009068	EXOSC1	94	95.897	Canis_familiaris
ENSMUSG00000034321	Exosc1	100	95.897	ENSCAFG00020006002	EXOSC1	94	95.897	Canis_lupus_dingo
ENSMUSG00000034321	Exosc1	100	96.923	ENSCHIG00000015253	EXOSC1	100	96.923	Capra_hircus
ENSMUSG00000034321	Exosc1	100	96.753	ENSTSYG00000000760	EXOSC1	100	96.753	Carlito_syrichta
ENSMUSG00000034321	Exosc1	100	96.753	ENSCPOG00000001173	EXOSC1	100	96.753	Cavia_porcellus
ENSMUSG00000034321	Exosc1	100	60.870	ENSCCAG00000023986	EXOSC1	100	60.870	Cebus_capucinus
ENSMUSG00000034321	Exosc1	100	96.753	ENSCATG00000034114	EXOSC1	100	96.753	Cercocebus_atys
ENSMUSG00000034321	Exosc1	100	97.403	ENSCLAG00000002463	EXOSC1	100	97.403	Chinchilla_lanigera
ENSMUSG00000034321	Exosc1	100	95.385	ENSCSAG00000005870	EXOSC1	100	95.385	Chlorocebus_sabaeus
ENSMUSG00000034321	Exosc1	96	82.353	ENSCHOG00000006477	EXOSC1	100	82.353	Choloepus_hoffmanni
ENSMUSG00000034321	Exosc1	54	83.019	ENSCPBG00000011949	EXOSC1	88	83.019	Chrysemys_picta_bellii
ENSMUSG00000034321	Exosc1	95	55.080	ENSCING00000022734	-	89	55.080	Ciona_intestinalis
ENSMUSG00000034321	Exosc1	95	55.615	ENSCSAVG00000010865	-	95	55.615	Ciona_savignyi
ENSMUSG00000034321	Exosc1	100	96.753	ENSCANG00000034159	EXOSC1	100	96.753	Colobus_angolensis_palliatus
ENSMUSG00000034321	Exosc1	100	98.974	ENSCGRG00001000335	Exosc1	100	98.974	Cricetulus_griseus_chok1gshd
ENSMUSG00000034321	Exosc1	100	98.974	ENSCGRG00000011602	Exosc1	100	98.974	Cricetulus_griseus_crigri
ENSMUSG00000034321	Exosc1	98	67.016	ENSCSEG00000007895	exosc1	95	67.016	Cynoglossus_semilaevis
ENSMUSG00000034321	Exosc1	98	74.869	ENSCVAG00000016748	exosc1	98	74.869	Cyprinodon_variegatus
ENSMUSG00000034321	Exosc1	98	79.058	ENSDARG00000059841	exosc1	98	79.058	Danio_rerio
ENSMUSG00000034321	Exosc1	75	95.270	ENSDNOG00000007983	EXOSC1	100	95.270	Dasypus_novemcinctus
ENSMUSG00000034321	Exosc1	100	96.753	ENSDORG00000016528	Exosc1	100	96.753	Dipodomys_ordii
ENSMUSG00000034321	Exosc1	94	48.148	FBgn0032346	Csl4	92	48.148	Drosophila_melanogaster
ENSMUSG00000034321	Exosc1	100	95.897	ENSETEG00000002469	-	100	95.897	Echinops_telfairi
ENSMUSG00000034321	Exosc1	99	61.735	ENSEBUG00000008164	exosc1	98	61.735	Eptatretus_burgeri
ENSMUSG00000034321	Exosc1	100	87.179	ENSEASG00005008684	EXOSC1	100	87.179	Equus_asinus_asinus
ENSMUSG00000034321	Exosc1	61	76.471	ENSECAG00000010621	EXOSC1	71	76.471	Equus_caballus
ENSMUSG00000034321	Exosc1	100	95.385	ENSEEUG00000005647	EXOSC1	100	95.385	Erinaceus_europaeus
ENSMUSG00000034321	Exosc1	94	79.348	ENSELUG00000017369	exosc1	81	79.348	Esox_lucius
ENSMUSG00000034321	Exosc1	100	96.410	ENSFCAG00000040563	EXOSC1	94	96.410	Felis_catus
ENSMUSG00000034321	Exosc1	100	84.103	ENSFALG00000008450	EXOSC1	100	84.103	Ficedula_albicollis
ENSMUSG00000034321	Exosc1	100	96.410	ENSFDAG00000000846	EXOSC1	100	96.410	Fukomys_damarensis
ENSMUSG00000034321	Exosc1	98	74.869	ENSFHEG00000009154	exosc1	98	74.869	Fundulus_heteroclitus
ENSMUSG00000034321	Exosc1	98	78.534	ENSGMOG00000008993	exosc1	98	78.534	Gadus_morhua
ENSMUSG00000034321	Exosc1	100	73.333	ENSGALG00000039917	EXOSC1	100	87.671	Gallus_gallus
ENSMUSG00000034321	Exosc1	98	75.393	ENSGAFG00000010265	exosc1	94	75.393	Gambusia_affinis
ENSMUSG00000034321	Exosc1	98	78.534	ENSGACG00000018936	exosc1	98	78.534	Gasterosteus_aculeatus
ENSMUSG00000034321	Exosc1	100	85.641	ENSGAGG00000019192	EXOSC1	100	85.641	Gopherus_agassizii
ENSMUSG00000034321	Exosc1	100	84.103	ENSGGOG00000003099	EXOSC1	100	84.103	Gorilla_gorilla
ENSMUSG00000034321	Exosc1	98	78.534	ENSHBUG00000017857	exosc1	98	78.534	Haplochromis_burtoni
ENSMUSG00000034321	Exosc1	100	96.753	ENSHGLG00000016927	EXOSC1	100	96.753	Heterocephalus_glaber_female
ENSMUSG00000034321	Exosc1	100	96.753	ENSHGLG00100012208	EXOSC1	100	96.753	Heterocephalus_glaber_male
ENSMUSG00000034321	Exosc1	98	77.487	ENSHCOG00000019882	exosc1	98	77.487	Hippocampus_comes
ENSMUSG00000034321	Exosc1	98	79.058	ENSIPUG00000007685	exosc1	98	79.058	Ictalurus_punctatus
ENSMUSG00000034321	Exosc1	63	80.328	ENSSTOG00000029860	-	93	80.328	Ictidomys_tridecemlineatus
ENSMUSG00000034321	Exosc1	100	96.753	ENSSTOG00000006615	EXOSC1	100	96.753	Ictidomys_tridecemlineatus
ENSMUSG00000034321	Exosc1	100	96.410	ENSJJAG00000013311	Exosc1	100	96.410	Jaculus_jaculus
ENSMUSG00000034321	Exosc1	98	77.487	ENSKMAG00000001202	exosc1	81	77.487	Kryptolebias_marmoratus
ENSMUSG00000034321	Exosc1	98	78.010	ENSLBEG00000011448	exosc1	98	78.010	Labrus_bergylta
ENSMUSG00000034321	Exosc1	98	74.522	ENSLOCG00000003776	exosc1	99	74.522	Lepisosteus_oculatus
ENSMUSG00000034321	Exosc1	100	96.410	ENSLAFG00000015983	EXOSC1	100	96.410	Loxodonta_africana
ENSMUSG00000034321	Exosc1	100	96.753	ENSMFAG00000001493	EXOSC1	100	96.753	Macaca_fascicularis
ENSMUSG00000034321	Exosc1	100	96.753	ENSMMUG00000020028	EXOSC1	100	96.753	Macaca_mulatta
ENSMUSG00000034321	Exosc1	100	95.897	ENSMNEG00000029816	EXOSC1	100	95.897	Macaca_nemestrina
ENSMUSG00000034321	Exosc1	100	96.753	ENSMLEG00000027643	EXOSC1	100	96.753	Mandrillus_leucophaeus
ENSMUSG00000034321	Exosc1	98	79.058	ENSMAMG00000012200	exosc1	98	79.058	Mastacembelus_armatus
ENSMUSG00000034321	Exosc1	98	78.534	ENSMZEG00005007042	exosc1	98	78.534	Maylandia_zebra
ENSMUSG00000034321	Exosc1	100	86.667	ENSMAUG00000020462	-	100	86.667	Mesocricetus_auratus
ENSMUSG00000034321	Exosc1	100	96.104	ENSMICG00000007664	EXOSC1	100	96.104	Microcebus_murinus
ENSMUSG00000034321	Exosc1	97	92.105	ENSMOCG00000017124	-	97	92.105	Microtus_ochrogaster
ENSMUSG00000034321	Exosc1	100	98.974	ENSMOCG00000006004	-	100	98.974	Microtus_ochrogaster
ENSMUSG00000034321	Exosc1	99	75.163	ENSMMOG00000021403	exosc1	99	75.163	Mola_mola
ENSMUSG00000034321	Exosc1	100	91.327	ENSMODG00000004213	EXOSC1	100	91.327	Monodelphis_domestica
ENSMUSG00000034321	Exosc1	94	79.348	ENSMALG00000007061	exosc1	92	79.348	Monopterus_albus
ENSMUSG00000034321	Exosc1	100	99.487	MGP_CAROLIEiJ_G0022959	Exosc1	100	99.487	Mus_caroli
ENSMUSG00000034321	Exosc1	100	98.974	MGP_PahariEiJ_G0014449	Exosc1	100	98.974	Mus_pahari
ENSMUSG00000034321	Exosc1	100	99.487	MGP_SPRETEiJ_G0023880	Exosc1	100	99.487	Mus_spretus
ENSMUSG00000034321	Exosc1	100	96.410	ENSMPUG00000017044	EXOSC1	100	96.410	Mustela_putorius_furo
ENSMUSG00000034321	Exosc1	100	95.897	ENSMLUG00000009228	EXOSC1	100	95.897	Myotis_lucifugus
ENSMUSG00000034321	Exosc1	100	96.923	ENSNGAG00000022033	Exosc1	100	96.923	Nannospalax_galili
ENSMUSG00000034321	Exosc1	97	76.000	ENSNBRG00000024007	exosc1	97	76.000	Neolamprologus_brichardi
ENSMUSG00000034321	Exosc1	100	96.753	ENSNLEG00000013872	EXOSC1	100	96.753	Nomascus_leucogenys
ENSMUSG00000034321	Exosc1	59	88.696	ENSMEUG00000002246	EXOSC1	100	88.696	Notamacropus_eugenii
ENSMUSG00000034321	Exosc1	100	96.410	ENSOPRG00000005065	EXOSC1	100	96.410	Ochotona_princeps
ENSMUSG00000034321	Exosc1	100	96.753	ENSODEG00000016709	EXOSC1	100	96.753	Octodon_degus
ENSMUSG00000034321	Exosc1	98	78.534	ENSONIG00000017683	exosc1	98	78.534	Oreochromis_niloticus
ENSMUSG00000034321	Exosc1	59	92.174	ENSOANG00000006563	EXOSC1	98	90.323	Ornithorhynchus_anatinus
ENSMUSG00000034321	Exosc1	100	91.282	ENSOCUG00000026461	-	100	91.282	Oryctolagus_cuniculus
ENSMUSG00000034321	Exosc1	100	95.918	ENSOCUG00000011898	-	100	95.918	Oryctolagus_cuniculus
ENSMUSG00000034321	Exosc1	98	77.083	ENSORLG00000011595	exosc1	98	77.083	Oryzias_latipes
ENSMUSG00000034321	Exosc1	98	77.083	ENSORLG00020005831	exosc1	98	77.083	Oryzias_latipes_hni
ENSMUSG00000034321	Exosc1	98	77.083	ENSORLG00015004317	exosc1	98	77.083	Oryzias_latipes_hsok
ENSMUSG00000034321	Exosc1	97	63.584	ENSOMEG00000013907	exosc1	98	63.584	Oryzias_melastigma
ENSMUSG00000034321	Exosc1	100	96.410	ENSOGAG00000016259	EXOSC1	100	96.410	Otolemur_garnettii
ENSMUSG00000034321	Exosc1	100	96.410	ENSOARG00000010136	EXOSC1	100	96.410	Ovis_aries
ENSMUSG00000034321	Exosc1	100	96.753	ENSPPAG00000039842	EXOSC1	100	96.753	Pan_paniscus
ENSMUSG00000034321	Exosc1	100	96.410	ENSPPRG00000023366	EXOSC1	100	96.410	Panthera_pardus
ENSMUSG00000034321	Exosc1	100	96.410	ENSPTIG00000017701	EXOSC1	100	96.410	Panthera_tigris_altaica
ENSMUSG00000034321	Exosc1	100	96.753	ENSPTRG00000002808	EXOSC1	100	96.753	Pan_troglodytes
ENSMUSG00000034321	Exosc1	100	96.753	ENSPANG00000021324	EXOSC1	100	96.753	Papio_anubis
ENSMUSG00000034321	Exosc1	98	79.581	ENSPKIG00000016037	exosc1	98	79.581	Paramormyrops_kingsleyae
ENSMUSG00000034321	Exosc1	75	80.822	ENSPSIG00000013571	EXOSC1	98	81.148	Pelodiscus_sinensis
ENSMUSG00000034321	Exosc1	98	68.063	ENSPMGG00000014002	exosc1	98	68.063	Periophthalmus_magnuspinnatus
ENSMUSG00000034321	Exosc1	100	98.974	ENSPEMG00000010710	-	100	98.974	Peromyscus_maniculatus_bairdii
ENSMUSG00000034321	Exosc1	95	70.053	ENSPMAG00000000195	exosc1	95	70.053	Petromyzon_marinus
ENSMUSG00000034321	Exosc1	100	92.308	ENSPCIG00000002210	EXOSC1	99	92.308	Phascolarctos_cinereus
ENSMUSG00000034321	Exosc1	98	74.869	ENSPFOG00000006755	exosc1	94	74.869	Poecilia_formosa
ENSMUSG00000034321	Exosc1	98	74.869	ENSPLAG00000005880	exosc1	98	74.869	Poecilia_latipinna
ENSMUSG00000034321	Exosc1	98	74.869	ENSPMEG00000015598	exosc1	94	74.869	Poecilia_mexicana
ENSMUSG00000034321	Exosc1	98	65.969	ENSPREG00000000405	exosc1	93	65.969	Poecilia_reticulata
ENSMUSG00000034321	Exosc1	100	95.385	ENSPPYG00000002531	EXOSC1	100	95.385	Pongo_abelii
ENSMUSG00000034321	Exosc1	100	96.410	ENSPCAG00000009135	EXOSC1	100	96.410	Procavia_capensis
ENSMUSG00000034321	Exosc1	100	90.256	ENSPCOG00000027539	EXOSC1	100	90.256	Propithecus_coquereli
ENSMUSG00000034321	Exosc1	100	96.410	ENSPVAG00000003372	EXOSC1	100	96.410	Pteropus_vampyrus
ENSMUSG00000034321	Exosc1	98	78.534	ENSPNYG00000021745	exosc1	98	78.534	Pundamilia_nyererei
ENSMUSG00000034321	Exosc1	98	79.058	ENSPNAG00000001944	exosc1	98	79.058	Pygocentrus_nattereri
ENSMUSG00000034321	Exosc1	100	98.974	ENSRNOG00000048708	Exosc1	100	98.974	Rattus_norvegicus
ENSMUSG00000034321	Exosc1	100	96.753	ENSRBIG00000035618	EXOSC1	100	96.753	Rhinopithecus_bieti
ENSMUSG00000034321	Exosc1	100	96.753	ENSRROG00000032589	EXOSC1	100	96.753	Rhinopithecus_roxellana
ENSMUSG00000034321	Exosc1	100	97.436	ENSSBOG00000000359	EXOSC1	100	97.436	Saimiri_boliviensis_boliviensis
ENSMUSG00000034321	Exosc1	75	93.878	ENSSHAG00000018219	EXOSC1	100	93.878	Sarcophilus_harrisii
ENSMUSG00000034321	Exosc1	98	81.152	ENSSFOG00015009069	exosc1	98	81.152	Scleropages_formosus
ENSMUSG00000034321	Exosc1	97	76.316	ENSSFOG00015016289	-	98	76.316	Scleropages_formosus
ENSMUSG00000034321	Exosc1	98	79.058	ENSSMAG00000003721	exosc1	98	79.058	Scophthalmus_maximus
ENSMUSG00000034321	Exosc1	98	79.058	ENSSDUG00000002993	exosc1	98	79.058	Seriola_dumerili
ENSMUSG00000034321	Exosc1	98	79.058	ENSSLDG00000025181	exosc1	98	79.058	Seriola_lalandi_dorsalis
ENSMUSG00000034321	Exosc1	100	83.077	ENSSARG00000000162	EXOSC1	100	83.077	Sorex_araneus
ENSMUSG00000034321	Exosc1	99	84.021	ENSSPUG00000012263	EXOSC1	99	84.021	Sphenodon_punctatus
ENSMUSG00000034321	Exosc1	98	70.157	ENSSPAG00000016792	exosc1	82	70.157	Stegastes_partitus
ENSMUSG00000034321	Exosc1	100	95.385	ENSSSCG00000010518	EXOSC1	91	95.385	Sus_scrofa
ENSMUSG00000034321	Exosc1	98	82.292	ENSTGUG00000009692	EXOSC1	99	82.292	Taeniopygia_guttata
ENSMUSG00000034321	Exosc1	97	72.487	ENSTRUG00000007706	exosc1	98	72.487	Takifugu_rubripes
ENSMUSG00000034321	Exosc1	97	72.396	ENSTNIG00000014079	exosc1	97	72.396	Tetraodon_nigroviridis
ENSMUSG00000034321	Exosc1	100	87.692	ENSTBEG00000006011	EXOSC1	100	87.692	Tupaia_belangeri
ENSMUSG00000034321	Exosc1	94	96.196	ENSTTRG00000009887	EXOSC1	100	96.196	Tursiops_truncatus
ENSMUSG00000034321	Exosc1	100	84.516	ENSUAMG00000010266	EXOSC1	100	84.516	Ursus_americanus
ENSMUSG00000034321	Exosc1	100	83.974	ENSUMAG00000022002	EXOSC1	100	83.974	Ursus_maritimus
ENSMUSG00000034321	Exosc1	100	95.897	ENSVVUG00000023192	EXOSC1	63	95.897	Vulpes_vulpes
ENSMUSG00000034321	Exosc1	98	79.688	ENSXETG00000003434	exosc1	99	79.688	Xenopus_tropicalis
ENSMUSG00000034321	Exosc1	62	84.167	ENSXCOG00000014499	exosc1	92	84.167	Xiphophorus_couchianus
ENSMUSG00000034321	Exosc1	98	65.445	ENSXMAG00000023382	exosc1	93	65.445	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000176	nuclear exosome (RNase complex)	21873635.	IBA	Component
GO:0000178	exosome (RNase complex)	-	ISO	Component
GO:0003723	RNA binding	-	IEA	Function
GO:0005515	protein binding	21791617.	IPI	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006364	rRNA processing	-	IEA	Process
GO:0006396	RNA processing	-	ISO	Process