EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000034593 (Gene tree)
Gene ID: 17918
Gene Symbol: Myo5a
Alias: 9630007J19Rik|Dbv|MVa|Myo5|MyoVA|flail
Full Name: myosin VA
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 152674
Position: chr9: 75071015-75223688
Accession: 105976
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000123531	-	3002	-	ENSMUSP00000122773	47 (aa)	-	D6RFU0
ENSMUST00000149823	-	1768	-	-	- (aa)	-	-
ENSMUST00000123128	-	11702	XM_006510827	ENSMUSP00000116028	1853 (aa)	XP_006510890	Q99104
ENSMUST00000136871	-	1919	-	-	- (aa)	-	-
ENSMUST00000143355	-	671	-	-	- (aa)	-	-
ENSMUST00000153404	-	651	-	-	- (aa)	-	-
ENSMUST00000130384	-	650	-	ENSMUSP00000114803	217 (aa)	-	F6Z2S4
ENSMUST00000136604	-	2640	-	-	- (aa)	-	-
ENSMUST00000129281	-	684	-	ENSMUSP00000118881	228 (aa)	-	B8JK05
ENSMUST00000142181	-	679	-	-	- (aa)	-	-
ENSMUST00000136731	-	6480	XM_006510832	ENSMUSP00000120444	1828 (aa)	XP_006510895	D3YZ62
ENSMUST00000148144	-	1758	-	ENSMUSP00000121158	585 (aa)	-	F6TDE5
ENSMUST00000149032	-	801	-	-	- (aa)	-	-
ENSMUST00000155282	-	6372	XM_006510829	ENSMUSP00000117493	1855 (aa)	XP_006510892	D3Z4J3

Gene Model

Click here to download ENSMUSG00000034593's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000034593's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000034593	Myo5a	100	99.487	ENSG00000197535	MYO5A	100	99.487	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000146	microfilament motor activity	11706052.15007063.	IDA	Function
GO:0000146	microfilament motor activity	-	ISO	Function
GO:0000149	SNARE binding	-	ISO	Function
GO:0000166	nucleotide binding	-	IEA	Function
GO:0001726	ruffle	-	ISO	Component
GO:0001750	photoreceptor outer segment	14978221.	IDA	Component
GO:0003774	motor activity	11706052.	IDA	Function
GO:0003774	motor activity	-	ISO	Function
GO:0003779	actin binding	11706052.12403814.16137617.	IDA	Function
GO:0005509	calcium ion binding	15007063.	IDA	Function
GO:0005515	protein binding	11266470.11432975.12403814.14730011.	IPI	Function
GO:0005516	calmodulin binding	11706052.15007063.25260918.	IDA	Function
GO:0005524	ATP binding	-	ISO	Function
GO:0005737	cytoplasm	8962090.9133672.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005764	lysosome	-	ISO	Component
GO:0005769	early endosome	-	ISO	Component
GO:0005770	late endosome	-	ISO	Component
GO:0005777	peroxisome	-	ISO	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0005790	smooth endoplasmic reticulum	21151132.	EXP	Component
GO:0005790	smooth endoplasmic reticulum	21151132.	IDA	Component
GO:0005794	Golgi apparatus	14724135.	IDA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005882	intermediate filament	8188282.	IDA	Component
GO:0005884	actin filament	-	ISO	Component
GO:0006582	melanin metabolic process	9548375.	IMP	Process
GO:0006887	exocytosis	15788565.	IMP	Process
GO:0006892	post-Golgi vesicle-mediated transport	-	ISO	Process
GO:0007268	chemical synaptic transmission	15316067.	IMP	Process
GO:0007601	visual perception	15316067.	IMP	Process
GO:0008021	synaptic vesicle	-	ISO	Component
GO:0015031	protein transport	-	IEA	Process
GO:0016020	membrane	-	ISO	Component
GO:0016192	vesicle-mediated transport	22908308.	IMP	Process
GO:0016459	myosin complex	11706052.12403814.	IDA	Component
GO:0016461	unconventional myosin complex	17513864.	IMP	Component
GO:0017075	syntaxin-1 binding	-	ISO	Function
GO:0017137	Rab GTPase binding	22908308.	IPI	Function
GO:0017137	Rab GTPase binding	-	ISO	Function
GO:0017157	regulation of exocytosis	-	ISO	Process
GO:0019901	protein kinase binding	-	ISO	Function
GO:0030048	actin filament-based movement	15007063.	IDA	Process
GO:0030048	actin filament-based movement	-	ISO	Process
GO:0030050	vesicle transport along actin filament	-	ISO	Process
GO:0030050	vesicle transport along actin filament	11706052.	TAS	Process
GO:0030073	insulin secretion	15788565.	IMP	Process
GO:0030141	secretory granule	15788565.	IDA	Component
GO:0030141	secretory granule	-	ISO	Component
GO:0030318	melanocyte differentiation	1996138.2379821.7828830.	IMP	Process
GO:0030424	axon	-	ISO	Component
GO:0030425	dendrite	-	ISO	Component
GO:0031585	regulation of inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity	11086997.	IMP	Process
GO:0031982	vesicle	-	ISO	Component
GO:0031987	locomotion involved in locomotory behavior	10536275.10749990.	IMP	Process
GO:0032252	secretory granule localization	15788565.	IMP	Process
GO:0032252	secretory granule localization	-	ISO	Process
GO:0032400	melanosome localization	8962090.11266470.14730011.	IMP	Process
GO:0032402	melanosome transport	9133672.	IDA	Process
GO:0032402	melanosome transport	9548375.11266473.24721909.	IMP	Process
GO:0032433	filopodium tip	-	ISO	Component
GO:0032593	insulin-responsive compartment	22908308.	IDA	Component
GO:0032869	cellular response to insulin stimulus	22908308.	IMP	Process
GO:0035371	microtubule plus-end	16247022.	IDA	Component
GO:0042438	melanin biosynthetic process	7665913.	IMP	Process
GO:0042470	melanosome	9133672.11886590.11887186.	IDA	Component
GO:0042470	melanosome	-	ISO	Component
GO:0042476	odontogenesis	14730011.	IDA	Process
GO:0042552	myelination	1150661.	IMP	Process
GO:0042641	actomyosin	8188282.	IDA	Component
GO:0042642	actomyosin, myosin complex part	-	ISO	Component
GO:0042759	long-chain fatty acid biosynthetic process	1150661.	IMP	Process
GO:0042802	identical protein binding	20018767.20133809.	IPI	Function
GO:0043005	neuron projection	-	ISO	Component
GO:0043008	ATP-dependent protein binding	-	ISO	Function
GO:0043025	neuronal cell body	1996138.	IDA	Component
GO:0043025	neuronal cell body	-	ISO	Component
GO:0043473	pigmentation	2379821.3141922.3422417.6098826.6305507.7774591.7828830.9560408.9560409.13880466.17247639.24721909.25340873.	IMP	Process
GO:0043473	pigmentation	10920234.	ISO	Process
GO:0046982	protein heterodimerization activity	-	ISO	Function
GO:0046983	protein dimerization activity	-	ISO	Function
GO:0048066	developmental pigmentation	15550542.	IMP	Process
GO:0048306	calcium-dependent protein binding	-	ISO	Function
GO:0048820	hair follicle maturation	25340873.	IMP	Process
GO:0050808	synapse organization	15316067.	IMP	Process
GO:0050885	neuromuscular process controlling balance	-	IMP	Process
GO:0051015	actin filament binding	-	IEA	Function
GO:0051643	endoplasmic reticulum localization	8899740.10749990.	IMP	Process
GO:0055037	recycling endosome	-	ISO	Component
GO:0055037	recycling endosome	-	ISO	Component
GO:0072659	protein localization to plasma membrane	22908308.	IMP	Process
GO:0097718	disordered domain specific binding	17513864.	IPI	Function
GO:0098685	Schaffer collateral - CA1 synapse	-	ISO	Component
GO:0098794	postsynapse	21151132.	EXP	Component
GO:0098794	postsynapse	21151132.	IDA	Component
GO:0098871	postsynaptic actin cytoskeleton	-	ISO	Component
GO:0098978	glutamatergic synapse	21151132.	EXP	Component
GO:0098978	glutamatergic synapse	21151132.	IDA	Component
GO:0098978	glutamatergic synapse	21151132.	IMP	Component
GO:0098978	glutamatergic synapse	-	ISO	Component
GO:0099089	establishment of endoplasmic reticulum localization to postsynapse	21151132.	EXP	Process
GO:0099089	establishment of endoplasmic reticulum localization to postsynapse	21151132.	IDA	Process
GO:0099089	establishment of endoplasmic reticulum localization to postsynapse	21151132.	IMP	Process
GO:0099566	regulation of postsynaptic cytosolic calcium ion concentration	21151132.	EXP	Process
GO:0099566	regulation of postsynaptic cytosolic calcium ion concentration	21151132.	IDA	Process
GO:0099566	regulation of postsynaptic cytosolic calcium ion concentration	21151132.	IMP	Process
GO:0099640	axo-dendritic protein transport	-	ISO	Process
GO:1900078	positive regulation of cellular response to insulin stimulus	-	ISO	Process
GO:1903078	positive regulation of protein localization to plasma membrane	-	ISO	Process
GO:1904754	positive regulation of vascular associated smooth muscle cell migration	-	ISO	Process
GO:1990904	ribonucleoprotein complex	-	ISO	Component