EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000034653 (Gene tree)
Gene ID
240255
Gene Symbol
Ythdc2
Alias
3010002F02Rik
Full Name
YTH domain containing 2
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
61979 bases
Position
chr18:44827746-44889724
Accession
2448561
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000048340R3HPF01424.221.9e-1011
ENSMUSP00000048340DEADPF00270.293.3e-0911
ENSMUSP00000048340YTHPF04146.151.6e-4211
ENSMUSP00000048340HA2PF04408.238.6e-1911
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000201099-1327--- (aa)--
ENSMUST00000201507-4290-ENSMUSP00000144479585 (aa)-A0A0J9YV44
ENSMUST00000202176-434--- (aa)--
ENSMUST00000037763-7215XM_006525915ENSMUSP000000483401445 (aa)XP_006525978B2RR83
Gene Model
Click here to download ENSMUSG00000034653's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000034653's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSMUSG00000034653Ythdc28836.015ENSMUSG00000027770Dhx368041.667
ENSMUSG00000034653Ythdc26931.785ENSMUSG00000029169Dhx158041.262
ENSMUSG00000034653Ythdc27236.504ENSMUSG00000035051Dhx575550.800
ENSMUSG00000034653Ythdc29035.912ENSMUSG00000042699Dhx95647.685
ENSMUSG00000034653Ythdc27035.392ENSMUSG00000032480Dhx305647.236
ENSMUSG00000034653Ythdc28932.714ENSMUSG00000042426Dhx295546.491
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000034653Ythdc210096.055ENSG00000047188YTHDC29999.265Homo_sapiens
ENSMUSG00000034653Ythdc29771.479ENSAPOG00000013442YTHDC29663.024Acanthochromis_polyacanthus
ENSMUSG00000034653Ythdc29898.087ENSAMEG00000006598YTHDC29997.459Ailuropoda_melanoleuca
ENSMUSG00000034653Ythdc29771.858ENSACIG00000012809YTHDC29964.080Amphilophus_citrinellus
ENSMUSG00000034653Ythdc29771.605ENSAOCG00000018480YTHDC29873.684Amphiprion_ocellaris
ENSMUSG00000034653Ythdc29771.781ENSAPEG00000014873YTHDC29773.684Amphiprion_percula
ENSMUSG00000034653Ythdc29769.190ENSATEG00000010847YTHDC28365.874Anabas_testudineus
ENSMUSG00000034653Ythdc27886.026ENSAPLG00000013814YTHDC29984.281Anas_platyrhynchos
ENSMUSG00000034653Ythdc29892.870ENSACAG00000007754YTHDC210088.973Anolis_carolinensis
ENSMUSG00000034653Ythdc29994.105ENSANAG00000022177YTHDC29994.105Aotus_nancymaae
ENSMUSG00000034653Ythdc29371.846ENSACLG00000019069YTHDC29472.932Astatotilapia_calliptera
ENSMUSG00000034653Ythdc29779.789ENSAMXG00000008735YTHDC29874.643Astyanax_mexicanus
ENSMUSG00000034653Ythdc210096.609ENSBTAG00000014099YTHDC210097.732Bos_taurus
ENSMUSG00000034653Ythdc29897.043ENSCJAG00000016598YTHDC210094.048Callithrix_jacchus
ENSMUSG00000034653Ythdc210091.632ENSCAFG00000000224YTHDC29997.038Canis_familiaris
ENSMUSG00000034653Ythdc210096.055ENSCAFG00020003668YTHDC29997.651Canis_lupus_dingo
ENSMUSG00000034653Ythdc210096.678ENSCHIG00000026651YTHDC210096.678Capra_hircus
ENSMUSG00000034653Ythdc29898.427ENSTSYG00000009634YTHDC29997.977Carlito_syrichta
ENSMUSG00000034653Ythdc29876.736ENSCAPG00000015691YTHDC29674.299Cavia_aperea
ENSMUSG00000034653Ythdc210097.024ENSCPOG00000000272YTHDC210097.024Cavia_porcellus
ENSMUSG00000034653Ythdc210096.817ENSCCAG00000037613YTHDC210096.817Cebus_capucinus
ENSMUSG00000034653Ythdc210096.332ENSCATG00000031670YTHDC210096.332Cercocebus_atys
ENSMUSG00000034653Ythdc29897.043ENSCLAG00000014076YTHDC29796.799Chinchilla_lanigera
ENSMUSG00000034653Ythdc210096.332ENSCSAG00000014899YTHDC210096.332Chlorocebus_sabaeus
ENSMUSG00000034653Ythdc28697.872ENSCHOG00000013323YTHDC29197.872Choloepus_hoffmanni
ENSMUSG00000034653Ythdc29993.934ENSCPBG00000013876YTHDC210091.972Chrysemys_picta_bellii
ENSMUSG00000034653Ythdc210096.194ENSCANG00000025759YTHDC210096.194Colobus_angolensis_palliatus
ENSMUSG00000034653Ythdc210098.685ENSCGRG00001021338Ythdc210098.685Cricetulus_griseus_chok1gshd
ENSMUSG00000034653Ythdc210097.785ENSCGRG00000010336Ythdc210097.785Cricetulus_griseus_crigri
ENSMUSG00000034653Ythdc29857.143ENSCSEG00000017911YTHDC29752.654Cynoglossus_semilaevis
ENSMUSG00000034653Ythdc29667.199ENSCVAG00000021377YTHDC29860.760Cyprinodon_variegatus
ENSMUSG00000034653Ythdc29871.870ENSDARG00000103525YTHDC29862.491Danio_rerio
ENSMUSG00000034653Ythdc210094.126ENSDNOG00000012198YTHDC210094.126Dasypus_novemcinctus
ENSMUSG00000034653Ythdc29593.591ENSDORG00000007057Ythdc29693.591Dipodomys_ordii
ENSMUSG00000034653Ythdc27133.254FBgn0030833CG89158334.637Drosophila_melanogaster
ENSMUSG00000034653Ythdc28883.817ENSETEG00000013681YTHDC28399.324Echinops_telfairi
ENSMUSG00000034653Ythdc25259.477ENSEBUG00000004188-6859.477Eptatretus_burgeri
ENSMUSG00000034653Ythdc29860.908ENSEBUG00000014315-8655.433Eptatretus_burgeri
ENSMUSG00000034653Ythdc210097.509ENSEASG00005015135YTHDC210097.509Equus_asinus_asinus
ENSMUSG00000034653Ythdc210097.439ENSECAG00000020630YTHDC210097.439Equus_caballus
ENSMUSG00000034653Ythdc28298.326ENSEEUG00000008580YTHDC28595.518Erinaceus_europaeus
ENSMUSG00000034653Ythdc29682.384ENSELUG00000015902YTHDC29874.686Esox_lucius
ENSMUSG00000034653Ythdc210096.955ENSFCAG00000031967YTHDC210096.955Felis_catus
ENSMUSG00000034653Ythdc29985.269ENSFALG00000002623-9983.869Ficedula_albicollis
ENSMUSG00000034653Ythdc29984.364ENSFALG00000000040-9982.663Ficedula_albicollis
ENSMUSG00000034653Ythdc29896.522ENSFDAG00000008701YTHDC210096.707Fukomys_damarensis
ENSMUSG00000034653Ythdc29469.928ENSFHEG00000009312YTHDC29862.203Fundulus_heteroclitus
ENSMUSG00000034653Ythdc27259.122ENSGMOG00000000789YTHDC28570.681Gadus_morhua
ENSMUSG00000034653Ythdc29983.333ENSGALG00000000189YTHDC29982.167Gallus_gallus
ENSMUSG00000034653Ythdc28469.620ENSGAFG00000008158YTHDC29269.620Gambusia_affinis
ENSMUSG00000034653Ythdc27373.502ENSGACG00000018569YTHDC29973.951Gasterosteus_aculeatus
ENSMUSG00000034653Ythdc29993.934ENSGAGG00000010063YTHDC210094.075Gopherus_agassizii
ENSMUSG00000034653Ythdc210096.194ENSGGOG00000014407YTHDC210096.194Gorilla_gorilla
ENSMUSG00000034653Ythdc29371.898ENSHBUG00000007492YTHDC29565.000Haplochromis_burtoni
ENSMUSG00000034653Ythdc210095.640ENSHGLG00000019014YTHDC210095.640Heterocephalus_glaber_female
ENSMUSG00000034653Ythdc210095.640ENSHGLG00100008192YTHDC210095.640Heterocephalus_glaber_male
ENSMUSG00000034653Ythdc28867.857ENSHCOG00000014281YTHDC29469.925Hippocampus_comes
ENSMUSG00000034653Ythdc29580.680ENSIPUG00000019561ythdc29673.519Ictalurus_punctatus
ENSMUSG00000034653Ythdc29898.957ENSSTOG00000013239YTHDC210096.540Ictidomys_tridecemlineatus
ENSMUSG00000034653Ythdc210093.707ENSJJAG00000017908Ythdc29794.429Jaculus_jaculus
ENSMUSG00000034653Ythdc29371.245ENSKMAG00000015969YTHDC29863.026Kryptolebias_marmoratus
ENSMUSG00000034653Ythdc29770.053ENSLBEG00000027926YTHDC28463.790Labrus_bergylta
ENSMUSG00000034653Ythdc29989.329ENSLACG00000010991YTHDC29985.378Latimeria_chalumnae
ENSMUSG00000034653Ythdc29981.067ENSLOCG00000009001YTHDC29877.754Lepisosteus_oculatus
ENSMUSG00000034653Ythdc29897.917ENSLAFG00000003538YTHDC210097.881Loxodonta_africana
ENSMUSG00000034653Ythdc27695.526ENSMFAG00000033417-10096.364Macaca_fascicularis
ENSMUSG00000034653Ythdc27895.022ENSMMUG00000001376-10096.000Macaca_mulatta
ENSMUSG00000034653Ythdc210096.401ENSMNEG00000040900YTHDC210096.401Macaca_nemestrina
ENSMUSG00000034653Ythdc210096.401ENSMLEG00000043185YTHDC210096.401Mandrillus_leucophaeus
ENSMUSG00000034653Ythdc29772.663ENSMAMG00000019193YTHDC29865.808Mastacembelus_armatus
ENSMUSG00000034653Ythdc29272.932ENSMZEG00005009153YTHDC29771.942Maylandia_zebra
ENSMUSG00000034653Ythdc29882.957ENSMGAG00000006674YTHDC29777.046Meleagris_gallopavo
ENSMUSG00000034653Ythdc210099.101ENSMAUG00000016179Ythdc210099.101Mesocricetus_auratus
ENSMUSG00000034653Ythdc210097.855ENSMICG00000004030YTHDC210097.855Microcebus_murinus
ENSMUSG00000034653Ythdc210098.408ENSMOCG00000011740Ythdc210098.408Microtus_ochrogaster
ENSMUSG00000034653Ythdc29767.434ENSMMOG00000011758YTHDC29364.194Mola_mola
ENSMUSG00000034653Ythdc210096.406ENSMODG00000015671YTHDC210096.406Monodelphis_domestica
ENSMUSG00000034653Ythdc29472.051ENSMALG00000002782YTHDC29367.558Monopterus_albus
ENSMUSG00000034653Ythdc2100100.000MGP_CAROLIEiJ_G0022248Ythdc2100100.000Mus_caroli
ENSMUSG00000034653Ythdc210099.516MGP_PahariEiJ_G0018981Ythdc210099.516Mus_pahari
ENSMUSG00000034653Ythdc210099.829MGP_SPRETEiJ_G0023159Ythdc210099.829Mus_spretus
ENSMUSG00000034653Ythdc29997.590ENSMPUG00000000755YTHDC29998.246Mustela_putorius_furo
ENSMUSG00000034653Ythdc210096.678ENSMLUG00000006106YTHDC210096.678Myotis_lucifugus
ENSMUSG00000034653Ythdc210096.955ENSNGAG00000017798Ythdc210096.955Nannospalax_galili
ENSMUSG00000034653Ythdc29372.395ENSNBRG00000000762YTHDC29561.337Neolamprologus_brichardi
ENSMUSG00000034653Ythdc210095.779ENSNLEG00000011648YTHDC210095.779Nomascus_leucogenys
ENSMUSG00000034653Ythdc28395.806ENSMEUG00000004414YTHDC27898.947Notamacropus_eugenii
ENSMUSG00000034653Ythdc278100.000ENSOPRG00000000462YTHDC276100.000Ochotona_princeps
ENSMUSG00000034653Ythdc210095.986ENSODEG00000007804YTHDC210095.986Octodon_degus
ENSMUSG00000034653Ythdc29372.051ENSONIG00000011601YTHDC29964.878Oreochromis_niloticus
ENSMUSG00000034653Ythdc29898.261ENSOCUG00000012096YTHDC210098.244Oryctolagus_cuniculus
ENSMUSG00000034653Ythdc29763.636ENSORLG00000019098YTHDC29074.384Oryzias_latipes
ENSMUSG00000034653Ythdc29763.222ENSORLG00015000390YTHDC29855.310Oryzias_latipes_hsok
ENSMUSG00000034653Ythdc29664.769ENSOMEG00000014221YTHDC29857.091Oryzias_melastigma
ENSMUSG00000034653Ythdc210097.855ENSOGAG00000001618YTHDC210097.855Otolemur_garnettii
ENSMUSG00000034653Ythdc29897.913ENSOARG00000016223YTHDC29796.003Ovis_aries
ENSMUSG00000034653Ythdc210096.263ENSPPAG00000018854YTHDC210096.263Pan_paniscus
ENSMUSG00000034653Ythdc210096.955ENSPPRG00000001595YTHDC210096.955Panthera_pardus
ENSMUSG00000034653Ythdc29897.565ENSPTIG00000021801YTHDC29698.025Panthera_tigris_altaica
ENSMUSG00000034653Ythdc210096.263ENSPTRG00000017143YTHDC210096.263Pan_troglodytes
ENSMUSG00000034653Ythdc210092.111ENSPANG00000024470YTHDC210092.111Papio_anubis
ENSMUSG00000034653Ythdc29778.032ENSPKIG00000016010YTHDC29872.891Paramormyrops_kingsleyae
ENSMUSG00000034653Ythdc29994.627ENSPSIG00000014798YTHDC210093.782Pelodiscus_sinensis
ENSMUSG00000034653Ythdc27371.429ENSPMGG00000020671YTHDC29861.940Periophthalmus_magnuspinnatus
ENSMUSG00000034653Ythdc210099.031ENSPEMG00000018062Ythdc210099.031Peromyscus_maniculatus_bairdii
ENSMUSG00000034653Ythdc29869.965ENSPMAG00000003218-9862.939Petromyzon_marinus
ENSMUSG00000034653Ythdc210094.879ENSPCIG00000004342YTHDC29896.355Phascolarctos_cinereus
ENSMUSG00000034653Ythdc29669.489ENSPFOG00000003895YTHDC29964.113Poecilia_formosa
ENSMUSG00000034653Ythdc29568.996ENSPLAG00000007558YTHDC29863.321Poecilia_latipinna
ENSMUSG00000034653Ythdc29569.464ENSPMEG00000015205YTHDC29963.429Poecilia_mexicana
ENSMUSG00000034653Ythdc29568.873ENSPREG00000012096YTHDC29569.065Poecilia_reticulata
ENSMUSG00000034653Ythdc210095.294ENSPPYG00000015691YTHDC210095.294Pongo_abelii
ENSMUSG00000034653Ythdc28794.253ENSPCAG00000007733YTHDC28894.253Procavia_capensis
ENSMUSG00000034653Ythdc29892.174ENSPCOG00000017526YTHDC29889.087Propithecus_coquereli
ENSMUSG00000034653Ythdc29397.176ENSPVAG00000012364YTHDC29397.176Pteropus_vampyrus
ENSMUSG00000034653Ythdc29371.846ENSPNYG00000006908YTHDC29663.537Pundamilia_nyererei
ENSMUSG00000034653Ythdc29782.509ENSPNAG00000010128YTHDC29876.149Pygocentrus_nattereri
ENSMUSG00000034653Ythdc29898.435ENSRNOG00000039241Ythdc29596.390Rattus_norvegicus
ENSMUSG00000034653Ythdc29994.974ENSRBIG00000040291YTHDC29894.259Rhinopithecus_bieti
ENSMUSG00000034653Ythdc210096.263ENSRROG00000039477YTHDC210096.263Rhinopithecus_roxellana
ENSMUSG00000034653Ythdc210096.886ENSSBOG00000023829YTHDC210096.886Saimiri_boliviensis_boliviensis
ENSMUSG00000034653Ythdc29896.696ENSSHAG00000003101YTHDC29996.549Sarcophilus_harrisii
ENSMUSG00000034653Ythdc29872.474ENSSFOG00015003572ythdc29868.723Scleropages_formosus
ENSMUSG00000034653Ythdc29462.432ENSSMAG00000011225YTHDC29356.375Scophthalmus_maximus
ENSMUSG00000034653Ythdc29568.803ENSSDUG00000021389YTHDC29864.632Seriola_dumerili
ENSMUSG00000034653Ythdc29572.939ENSSLDG00000022840YTHDC29866.308Seriola_lalandi_dorsalis
ENSMUSG00000034653Ythdc28793.016ENSSARG00000000924YTHDC28997.297Sorex_araneus
ENSMUSG00000034653Ythdc27692.841ENSSPUG00000015945-9989.514Sphenodon_punctatus
ENSMUSG00000034653Ythdc25287.666ENSSPUG00000015912-10087.401Sphenodon_punctatus
ENSMUSG00000034653Ythdc29771.252ENSSPAG00000014889YTHDC29864.613Stegastes_partitus
ENSMUSG00000034653Ythdc210097.439ENSSSCG00000014211YTHDC210098.407Sus_scrofa
ENSMUSG00000034653Ythdc26283.014ENSTGUG00000014213-10088.215Taeniopygia_guttata
ENSMUSG00000034653Ythdc27979.482ENSTGUG00000015973-9578.411Taeniopygia_guttata
ENSMUSG00000034653Ythdc29983.016ENSTGUG00000003755-10082.304Taeniopygia_guttata
ENSMUSG00000034653Ythdc29982.363ENSTGUG00000014992-9780.967Taeniopygia_guttata
ENSMUSG00000034653Ythdc26683.420ENSTGUG00000014232-10083.420Taeniopygia_guttata
ENSMUSG00000034653Ythdc29366.786ENSTRUG00000006717YTHDC29868.939Takifugu_rubripes
ENSMUSG00000034653Ythdc29368.431ENSTNIG00000003707YTHDC29959.656Tetraodon_nigroviridis
ENSMUSG00000034653Ythdc29691.964ENSTBEG00000006872YTHDC28893.419Tupaia_belangeri
ENSMUSG00000034653Ythdc29084.717ENSTTRG00000003116YTHDC28297.297Tursiops_truncatus
ENSMUSG00000034653Ythdc27698.427ENSUAMG00000003688YTHDC29997.091Ursus_americanus
ENSMUSG00000034653Ythdc29898.087ENSUMAG00000023877YTHDC210098.183Ursus_maritimus
ENSMUSG00000034653Ythdc29494.000ENSVPAG00000007516YTHDC29888.635Vicugna_pacos
ENSMUSG00000034653Ythdc210097.163ENSVVUG00000000281YTHDC210097.163Vulpes_vulpes
ENSMUSG00000034653Ythdc29785.263ENSXETG00000021517ythdc210077.029Xenopus_tropicalis
ENSMUSG00000034653Ythdc29466.906ENSXCOG00000016406YTHDC29771.429Xiphophorus_couchianus
ENSMUSG00000034653Ythdc29568.638ENSXMAG00000007618YTHDC29863.203Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000166nucleotide binding-IEAFunction
GO:0003676nucleic acid binding-IEAFunction
GO:0003723RNA binding21873635.IBAFunction
GO:0003723RNA binding29087293.IDAFunction
GO:0004386helicase activity-IEAFunction
GO:0005515protein binding26742488.28380054.29033321.IPIFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005737cytoplasm28380054.29033321.29087293.29360036.IDAComponent
GO:0005783endoplasmic reticulum-ISOComponent
GO:0005783endoplasmic reticulum-ISOComponent
GO:0007283spermatogenesis-IEAProcess
GO:0007286spermatid development29033321.29087293.29360036.IMPProcess
GO:0008186RNA-dependent ATPase activity-ISOFunction
GO:0016787hydrolase activity-IEAFunction
GO:0030154cell differentiation-IEAProcess
GO:00344583'-5' RNA helicase activity29360036.IDAFunction
GO:00344583'-5' RNA helicase activity-ISOFunction
GO:0034459ATP-dependent 3'-5' RNA helicase activity21873635.IBAFunction
GO:0034612response to tumor necrosis factor-ISOProcess
GO:0035770ribonucleoprotein granule29087293.IDAComponent
GO:0044829positive regulation by host of viral genome replication-ISOProcess
GO:0048477oogenesis-IEAProcess
GO:0048599oocyte development29033321.29087293.29360036.IMPProcess
GO:0051321meiotic cell cycle-IEAProcess
GO:0051729germline cell cycle switching, mitotic to meiotic cell cycle29033321.29087293.29360036.IMPProcess
GO:0070063RNA polymerase binding-ISOFunction
GO:0070555response to interleukin-1-ISOProcess
GO:1990247N6-methyladenosine-containing RNA binding21873635.IBAFunction
GO:1990247N6-methyladenosine-containing RNA binding28809393.IDAFunction
GO:1990247N6-methyladenosine-containing RNA binding-ISOFunction

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