EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000034681 (Gene tree)
Gene ID: 19826
Gene Symbol: Rnps1
Alias: -
Full Name: ribonucleic acid binding protein S1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 11337 bases
Position: chr17:24414565-24425901
Accession: 97960
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000111028	RRM_1	PF00076.22	1.3e-17	1	1
ENSMUSP00000085867	RRM_1	PF00076.22	1.5e-17	1	1
ENSMUSP00000126345	RRM_1	PF00076.22	1.5e-17	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000234630	-	1486	-	-	- (aa)	-	-
ENSMUST00000115371	-	1646	-	ENSMUSP00000111028	282 (aa)	-	Q99M28
ENSMUST00000234233	-	548	-	-	- (aa)	-	-
ENSMUST00000234342	-	2106	-	-	- (aa)	-	-
ENSMUST00000234977	-	1769	-	-	- (aa)	-	-
ENSMUST00000234154	-	501	-	-	- (aa)	-	-
ENSMUST00000234729	-	1839	-	-	- (aa)	-	-
ENSMUST00000163717	-	1920	XM_017317362	ENSMUSP00000126345	305 (aa)	XP_017172851	Q99M28
ENSMUST00000088512	-	1816	-	ENSMUSP00000085867	305 (aa)	-	Q99M28
ENSMUST00000234832	-	777	-	-	- (aa)	-	-
ENSMUST00000234089	-	341	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000034681's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG
mmu03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000034681's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000034681	Rnps1	100	100.000	ENSG00000205937	RNPS1	100	100.000	Homo_sapiens
ENSMUSG00000034681	Rnps1	78	69.038	ENSAPOG00000014649	-	85	70.124	Acanthochromis_polyacanthus
ENSMUSG00000034681	Rnps1	100	100.000	ENSAMEG00000017861	RNPS1	100	100.000	Ailuropoda_melanoleuca
ENSMUSG00000034681	Rnps1	76	67.907	ENSACIG00000014367	-	76	66.512	Amphilophus_citrinellus
ENSMUSG00000034681	Rnps1	85	70.417	ENSAOCG00000002404	RNPS1	84	70.417	Amphiprion_ocellaris
ENSMUSG00000034681	Rnps1	85	70.293	ENSAPEG00000006497	RNPS1	81	70.293	Amphiprion_percula
ENSMUSG00000034681	Rnps1	85	72.083	ENSATEG00000024267	RNPS1	84	72.614	Anabas_testudineus
ENSMUSG00000034681	Rnps1	86	65.779	ENSAPLG00000006231	RNPS1	65	93.548	Anas_platyrhynchos
ENSMUSG00000034681	Rnps1	76	90.987	ENSACAG00000004088	RNPS1	94	90.987	Anolis_carolinensis
ENSMUSG00000034681	Rnps1	77	96.789	ENSANAG00000029802	-	90	92.887	Aotus_nancymaae
ENSMUSG00000034681	Rnps1	100	99.672	ENSANAG00000028802	RNPS1	100	99.672	Aotus_nancymaae
ENSMUSG00000034681	Rnps1	85	64.583	ENSACLG00000021537	-	96	68.302	Astatotilapia_calliptera
ENSMUSG00000034681	Rnps1	85	75.417	ENSAMXG00000006330	-	84	68.750	Astyanax_mexicanus
ENSMUSG00000034681	Rnps1	100	99.344	ENSBTAG00000009969	RNPS1	100	99.344	Bos_taurus
ENSMUSG00000034681	Rnps1	100	100.000	ENSCJAG00000014969	RNPS1	100	100.000	Callithrix_jacchus
ENSMUSG00000034681	Rnps1	100	100.000	ENSCAFG00000019397	RNPS1	100	100.000	Canis_familiaris
ENSMUSG00000034681	Rnps1	100	100.000	ENSCAFG00020026159	RNPS1	100	100.000	Canis_lupus_dingo
ENSMUSG00000034681	Rnps1	72	99.510	ENSCHIG00000014621	-	69	99.024	Capra_hircus
ENSMUSG00000034681	Rnps1	79	95.455	ENSTSYG00000031848	-	98	95.417	Carlito_syrichta
ENSMUSG00000034681	Rnps1	100	100.000	ENSTSYG00000001629	RNPS1	100	100.000	Carlito_syrichta
ENSMUSG00000034681	Rnps1	100	99.672	ENSCAPG00000007731	RNPS1	100	99.672	Cavia_aperea
ENSMUSG00000034681	Rnps1	100	99.672	ENSCPOG00000002066	RNPS1	100	99.672	Cavia_porcellus
ENSMUSG00000034681	Rnps1	100	99.672	ENSCCAG00000034480	RNPS1	100	99.672	Cebus_capucinus
ENSMUSG00000034681	Rnps1	95	90.034	ENSCATG00000042361	-	87	93.893	Cercocebus_atys
ENSMUSG00000034681	Rnps1	100	100.000	ENSCATG00000013756	RNPS1	100	100.000	Cercocebus_atys
ENSMUSG00000034681	Rnps1	100	99.672	ENSCLAG00000015546	RNPS1	100	99.672	Chinchilla_lanigera
ENSMUSG00000034681	Rnps1	100	97.163	ENSCSAG00000005219	-	95	97.163	Chlorocebus_sabaeus
ENSMUSG00000034681	Rnps1	100	98.361	ENSCHOG00000004866	RNPS1	100	98.361	Choloepus_hoffmanni
ENSMUSG00000034681	Rnps1	79	63.750	ENSCPBG00000000214	RNPS1	73	63.889	Chrysemys_picta_bellii
ENSMUSG00000034681	Rnps1	72	85.577	ENSCANG00000030189	-	79	70.192	Colobus_angolensis_palliatus
ENSMUSG00000034681	Rnps1	100	100.000	ENSCANG00000041307	RNPS1	100	100.000	Colobus_angolensis_palliatus
ENSMUSG00000034681	Rnps1	100	100.000	ENSCGRG00001020431	Rnps1	100	100.000	Cricetulus_griseus_chok1gshd
ENSMUSG00000034681	Rnps1	100	99.344	ENSCGRG00000014021	Rnps1	100	99.344	Cricetulus_griseus_crigri
ENSMUSG00000034681	Rnps1	85	69.874	ENSCSEG00000015997	RNPS1	82	69.874	Cynoglossus_semilaevis
ENSMUSG00000034681	Rnps1	85	71.250	ENSCSEG00000000402	RNPS1	85	68.702	Cynoglossus_semilaevis
ENSMUSG00000034681	Rnps1	77	70.968	ENSCVAG00000010868	RNPS1	75	64.815	Cyprinodon_variegatus
ENSMUSG00000034681	Rnps1	85	63.750	ENSDARG00000100188	RNPS1	84	69.710	Danio_rerio
ENSMUSG00000034681	Rnps1	85	63.750	ENSDARG00000116743	rnps1	84	69.710	Danio_rerio
ENSMUSG00000034681	Rnps1	70	73.469	ENSDNOG00000038751	-	99	72.727	Dasypus_novemcinctus
ENSMUSG00000034681	Rnps1	100	100.000	ENSDNOG00000016081	RNPS1	100	100.000	Dasypus_novemcinctus
ENSMUSG00000034681	Rnps1	100	99.344	ENSDORG00000001755	Rnps1	100	99.344	Dipodomys_ordii
ENSMUSG00000034681	Rnps1	100	100.000	ENSEASG00005004862	RNPS1	100	100.000	Equus_asinus_asinus
ENSMUSG00000034681	Rnps1	81	93.548	ENSECAG00000023288	RNPS1	83	98.268	Equus_caballus
ENSMUSG00000034681	Rnps1	100	80.984	ENSEEUG00000005933	RNPS1	100	80.984	Erinaceus_europaeus
ENSMUSG00000034681	Rnps1	100	99.672	ENSFCAG00000007690	RNPS1	100	99.672	Felis_catus
ENSMUSG00000034681	Rnps1	85	95.397	ENSFALG00000004868	RNPS1	85	95.417	Ficedula_albicollis
ENSMUSG00000034681	Rnps1	100	99.344	ENSFDAG00000003386	RNPS1	100	99.344	Fukomys_damarensis
ENSMUSG00000034681	Rnps1	77	70.833	ENSFHEG00000011705	RNPS1	75	71.429	Fundulus_heteroclitus
ENSMUSG00000034681	Rnps1	85	95.417	ENSGALG00000009288	RNPS1	85	95.417	Gallus_gallus
ENSMUSG00000034681	Rnps1	85	68.465	ENSGACG00000005641	-	84	68.465	Gasterosteus_aculeatus
ENSMUSG00000034681	Rnps1	86	93.156	ENSGAGG00000010452	RNPS1	86	93.156	Gopherus_agassizii
ENSMUSG00000034681	Rnps1	100	100.000	ENSGGOG00000014275	RNPS1	100	100.000	Gorilla_gorilla
ENSMUSG00000034681	Rnps1	73	98.068	ENSGGOG00000026421	-	79	98.068	Gorilla_gorilla
ENSMUSG00000034681	Rnps1	79	64.730	ENSHBUG00000017337	-	84	72.199	Haplochromis_burtoni
ENSMUSG00000034681	Rnps1	100	100.000	ENSHGLG00000013957	RNPS1	100	100.000	Heterocephalus_glaber_female
ENSMUSG00000034681	Rnps1	79	95.982	ENSHGLG00000006292	-	97	95.142	Heterocephalus_glaber_female
ENSMUSG00000034681	Rnps1	80	83.265	ENSHGLG00100017879	-	80	70.248	Heterocephalus_glaber_male
ENSMUSG00000034681	Rnps1	92	94.231	ENSHGLG00100015267	-	80	95.495	Heterocephalus_glaber_male
ENSMUSG00000034681	Rnps1	73	92.683	ENSHGLG00100011610	-	84	92.683	Heterocephalus_glaber_male
ENSMUSG00000034681	Rnps1	100	100.000	ENSHGLG00100003539	RNPS1	100	100.000	Heterocephalus_glaber_male
ENSMUSG00000034681	Rnps1	99	85.053	ENSSTOG00000013200	RNPS1	100	88.197	Ictidomys_tridecemlineatus
ENSMUSG00000034681	Rnps1	86	82.129	ENSJJAG00000019234	-	68	79.498	Jaculus_jaculus
ENSMUSG00000034681	Rnps1	100	99.672	ENSJJAG00000015576	-	100	99.672	Jaculus_jaculus
ENSMUSG00000034681	Rnps1	85	71.784	ENSKMAG00000009135	RNPS1	84	67.220	Kryptolebias_marmoratus
ENSMUSG00000034681	Rnps1	85	87.917	ENSLACG00000007112	RNPS1	85	87.917	Latimeria_chalumnae
ENSMUSG00000034681	Rnps1	85	67.500	ENSLOCG00000001758	RNPS1	84	83.333	Lepisosteus_oculatus
ENSMUSG00000034681	Rnps1	100	100.000	ENSMFAG00000042142	RNPS1	100	100.000	Macaca_fascicularis
ENSMUSG00000034681	Rnps1	86	89.734	ENSMFAG00000044121	-	83	83.265	Macaca_fascicularis
ENSMUSG00000034681	Rnps1	88	94.776	ENSMMUG00000041726	-	92	94.677	Macaca_mulatta
ENSMUSG00000034681	Rnps1	72	100.000	ENSMMUG00000019238	-	80	100.000	Macaca_mulatta
ENSMUSG00000034681	Rnps1	88	95.149	ENSMNEG00000024827	-	92	95.057	Macaca_nemestrina
ENSMUSG00000034681	Rnps1	73	93.237	ENSMLEG00000040232	-	81	93.237	Mandrillus_leucophaeus
ENSMUSG00000034681	Rnps1	100	100.000	ENSMLEG00000036928	RNPS1	100	100.000	Mandrillus_leucophaeus
ENSMUSG00000034681	Rnps1	85	70.000	ENSMAMG00000021609	-	84	70.539	Mastacembelus_armatus
ENSMUSG00000034681	Rnps1	85	74.583	ENSMAMG00000021148	-	88	68.199	Mastacembelus_armatus
ENSMUSG00000034681	Rnps1	85	64.730	ENSMZEG00005006256	-	85	72.199	Maylandia_zebra
ENSMUSG00000034681	Rnps1	78	94.977	ENSMGAG00000010042	RNPS1	98	94.492	Meleagris_gallopavo
ENSMUSG00000034681	Rnps1	100	99.344	ENSMICG00000031543	RNPS1	100	99.344	Microcebus_murinus
ENSMUSG00000034681	Rnps1	100	100.000	ENSMOCG00000003429	Rnps1	100	100.000	Microtus_ochrogaster
ENSMUSG00000034681	Rnps1	76	66.512	ENSMMOG00000010863	RNPS1	75	65.116	Mola_mola
ENSMUSG00000034681	Rnps1	100	97.712	ENSMODG00000015891	RNPS1	100	97.712	Monodelphis_domestica
ENSMUSG00000034681	Rnps1	100	100.000	MGP_PahariEiJ_G0023498	Rnps1	100	100.000	Mus_pahari
ENSMUSG00000034681	Rnps1	100	100.000	MGP_SPRETEiJ_G0022092	Rnps1	100	100.000	Mus_spretus
ENSMUSG00000034681	Rnps1	100	100.000	ENSMLUG00000016808	RNPS1	100	100.000	Myotis_lucifugus
ENSMUSG00000034681	Rnps1	100	100.000	ENSNGAG00000023702	Rnps1	100	100.000	Nannospalax_galili
ENSMUSG00000034681	Rnps1	76	67.907	ENSNBRG00000023437	RNPS1	75	66.512	Neolamprologus_brichardi
ENSMUSG00000034681	Rnps1	81	63.563	ENSNBRG00000014540	-	92	68.750	Neolamprologus_brichardi
ENSMUSG00000034681	Rnps1	89	98.162	ENSNLEG00000009243	RNPS1	100	98.162	Nomascus_leucogenys
ENSMUSG00000034681	Rnps1	100	96.721	ENSMEUG00000008882	RNPS1	100	96.721	Notamacropus_eugenii
ENSMUSG00000034681	Rnps1	100	96.721	ENSOPRG00000016422	RNPS1	100	96.721	Ochotona_princeps
ENSMUSG00000034681	Rnps1	58	64.634	ENSODEG00000002513	-	79	64.516	Octodon_degus
ENSMUSG00000034681	Rnps1	57	66.250	ENSODEG00000017258	-	77	64.516	Octodon_degus
ENSMUSG00000034681	Rnps1	85	70.000	ENSORLG00015011183	RNPS1	74	71.369	Oryzias_latipes_hsok
ENSMUSG00000034681	Rnps1	95	99.310	ENSOARG00000018056	-	81	99.310	Ovis_aries
ENSMUSG00000034681	Rnps1	79	94.215	ENSPPAG00000037836	-	99	94.215	Pan_paniscus
ENSMUSG00000034681	Rnps1	100	93.443	ENSPPAG00000011845	RNPS1	100	93.443	Pan_paniscus
ENSMUSG00000034681	Rnps1	100	99.672	ENSPPRG00000011255	RNPS1	100	99.672	Panthera_pardus
ENSMUSG00000034681	Rnps1	63	100.000	ENSPTIG00000015643	RNPS1	85	100.000	Panthera_tigris_altaica
ENSMUSG00000034681	Rnps1	100	99.672	ENSPTRG00000031310	RNPS1	100	99.672	Pan_troglodytes
ENSMUSG00000034681	Rnps1	78	93.724	ENSPTRG00000046326	-	91	93.724	Pan_troglodytes
ENSMUSG00000034681	Rnps1	100	100.000	ENSPANG00000015748	RNPS1	100	100.000	Papio_anubis
ENSMUSG00000034681	Rnps1	73	72.947	ENSPANG00000033576	-	75	74.129	Papio_anubis
ENSMUSG00000034681	Rnps1	85	80.083	ENSPKIG00000023465	RNPS1	85	80.083	Paramormyrops_kingsleyae
ENSMUSG00000034681	Rnps1	85	94.142	ENSPSIG00000006048	RNPS1	86	92.776	Pelodiscus_sinensis
ENSMUSG00000034681	Rnps1	100	100.000	ENSPEMG00000012797	Rnps1	100	100.000	Peromyscus_maniculatus_bairdii
ENSMUSG00000034681	Rnps1	100	98.227	ENSPCIG00000025012	RNPS1	100	98.227	Phascolarctos_cinereus
ENSMUSG00000034681	Rnps1	61	88.742	ENSPCIG00000016114	-	80	98.387	Phascolarctos_cinereus
ENSMUSG00000034681	Rnps1	77	67.742	ENSPFOG00000009978	RNPS1	75	63.889	Poecilia_formosa
ENSMUSG00000034681	Rnps1	77	67.742	ENSPLAG00000009343	RNPS1	75	63.889	Poecilia_latipinna
ENSMUSG00000034681	Rnps1	77	67.742	ENSPMEG00000008552	RNPS1	75	63.889	Poecilia_mexicana
ENSMUSG00000034681	Rnps1	77	67.742	ENSPREG00000001843	RNPS1	75	63.889	Poecilia_reticulata
ENSMUSG00000034681	Rnps1	100	97.705	ENSPCAG00000004514	RNPS1	100	97.705	Procavia_capensis
ENSMUSG00000034681	Rnps1	100	99.672	ENSPCOG00000005478	RNPS1	100	99.672	Propithecus_coquereli
ENSMUSG00000034681	Rnps1	100	99.672	ENSPVAG00000005105	RNPS1	100	99.672	Pteropus_vampyrus
ENSMUSG00000034681	Rnps1	85	76.250	ENSPNAG00000025479	RNPS1	84	69.583	Pygocentrus_nattereri
ENSMUSG00000034681	Rnps1	100	99.672	ENSRNOG00000008703	Rnps1	100	99.672	Rattus_norvegicus
ENSMUSG00000034681	Rnps1	99	99.288	ENSRBIG00000038965	-	99	99.288	Rhinopithecus_bieti
ENSMUSG00000034681	Rnps1	89	100.000	ENSRROG00000041252	RNPS1	97	96.639	Rhinopithecus_roxellana
ENSMUSG00000034681	Rnps1	100	100.000	ENSSBOG00000027927	RNPS1	100	100.000	Saimiri_boliviensis_boliviensis
ENSMUSG00000034681	Rnps1	100	98.033	ENSSHAG00000016951	RNPS1	100	98.033	Sarcophilus_harrisii
ENSMUSG00000034681	Rnps1	85	76.987	ENSSFOG00015019341	-	75	69.295	Scleropages_formosus
ENSMUSG00000034681	Rnps1	85	73.444	ENSSFOG00015022746	RNPS1	87	67.500	Scleropages_formosus
ENSMUSG00000034681	Rnps1	85	70.833	ENSSDUG00000011453	RNPS1	84	71.369	Seriola_dumerili
ENSMUSG00000034681	Rnps1	82	65.217	ENSSLDG00000021341	RNPS1	76	67.647	Seriola_lalandi_dorsalis
ENSMUSG00000034681	Rnps1	79	97.107	ENSSARG00000001577	RNPS1	86	97.107	Sorex_araneus
ENSMUSG00000034681	Rnps1	86	93.536	ENSSPUG00000016588	RNPS1	86	93.536	Sphenodon_punctatus
ENSMUSG00000034681	Rnps1	100	99.672	ENSSSCG00000008048	RNPS1	100	99.672	Sus_scrofa
ENSMUSG00000034681	Rnps1	85	94.979	ENSTGUG00000003237	RNPS1	85	95.000	Taeniopygia_guttata
ENSMUSG00000034681	Rnps1	85	71.784	ENSTRUG00000008602	RNPS1	84	71.784	Takifugu_rubripes
ENSMUSG00000034681	Rnps1	85	72.083	ENSTNIG00000009753	RNPS1	84	72.016	Tetraodon_nigroviridis
ENSMUSG00000034681	Rnps1	89	100.000	ENSTBEG00000009098	RNPS1	100	100.000	Tupaia_belangeri
ENSMUSG00000034681	Rnps1	100	100.000	ENSTTRG00000008220	RNPS1	100	100.000	Tursiops_truncatus
ENSMUSG00000034681	Rnps1	90	100.000	ENSUAMG00000004462	RNPS1	100	100.000	Ursus_americanus
ENSMUSG00000034681	Rnps1	100	100.000	ENSUMAG00000022327	RNPS1	100	100.000	Ursus_maritimus
ENSMUSG00000034681	Rnps1	100	100.000	ENSVVUG00000009244	RNPS1	100	100.000	Vulpes_vulpes
ENSMUSG00000034681	Rnps1	81	72.174	ENSXETG00000024439	rnps1	73	72.124	Xenopus_tropicalis
ENSMUSG00000034681	Rnps1	85	67.635	ENSXMAG00000004827	RNPS1	84	64.167	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	ISO	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	-	ISO	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0003730	mRNA 3'-UTR binding	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008380	RNA splicing	21873635.	IBA	Process
GO:0043065	positive regulation of apoptotic process	-	ISO	Process
GO:0048025	negative regulation of mRNA splicing, via spliceosome	-	ISO	Process
GO:0061574	ASAP complex	21873635.	IBA	Component
GO:0061574	ASAP complex	-	ISO	Component