EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000034732 (Gene tree)
Gene ID: 93728
Gene Symbol: Pabpc5
Alias: -
Full Name: poly(A) binding protein%2C cytoplasmic 5
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 2970 bases
Position: chrX:119927196-119930165
Accession: 2136401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000047756	RRM_5	PF13893.6	9.2e-12	1	2
ENSMUSP00000047756	RRM_5	PF13893.6	9.2e-12	2	2
ENSMUSP00000108993	RRM_5	PF13893.6	9.2e-12	1	2
ENSMUSP00000108993	RRM_5	PF13893.6	9.2e-12	2	2
ENSMUSP00000047756	RRM_1	PF00076.22	1.4e-77	1	4
ENSMUSP00000047756	RRM_1	PF00076.22	1.4e-77	2	4
ENSMUSP00000047756	RRM_1	PF00076.22	1.4e-77	3	4
ENSMUSP00000047756	RRM_1	PF00076.22	1.4e-77	4	4
ENSMUSP00000108993	RRM_1	PF00076.22	1.4e-77	1	4
ENSMUSP00000108993	RRM_1	PF00076.22	1.4e-77	2	4
ENSMUSP00000108993	RRM_1	PF00076.22	1.4e-77	3	4
ENSMUSP00000108993	RRM_1	PF00076.22	1.4e-77	4	4

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000113366	-	2243	-	ENSMUSP00000108993	381 (aa)	-	Q8C7D3
ENSMUST00000040961	-	2434	-	ENSMUSP00000047756	381 (aa)	-	Q8C7D3

Gene Model

Click here to download ENSMUSG00000034732's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG
mmu03015	mRNA surveillance pathway	KEGG
mmu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000034732's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000034732	Pabpc5	95	65.289	ENSMUSG00000011257	Pabpc4	95	69.481
ENSMUSG00000034732	Pabpc5	93	33.333	ENSMUSG00000071337	Tia1	84	34.247
ENSMUSG00000034732	Pabpc5	96	57.967	ENSMUSG00000090919	Pabpc4l	97	57.865
ENSMUSG00000034732	Pabpc5	63	34.483	ENSMUSG00000032297	Celf6	51	34.483
ENSMUSG00000034732	Pabpc5	96	56.944	ENSMUSG00000054582	Pabpc1l	64	57.022
ENSMUSG00000034732	Pabpc5	95	64.463	ENSMUSG00000022283	Pabpc1	93	73.214
ENSMUSG00000034732	Pabpc5	65	38.333	ENSMUSG00000028137	Celf3	50	38.333
ENSMUSG00000034732	Pabpc5	94	37.037	ENSMUSG00000008489	Elavl2	89	37.037
ENSMUSG00000034732	Pabpc5	95	58.445	ENSMUSG00000046173	Pabpc6	59	58.470
ENSMUSG00000034732	Pabpc5	96	61.111	ENSMUSG00000051732	Pabpc2	62	60.955

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000034732	Pabpc5	99	95.515	ENSG00000174740	PABPC5	99	95.515	Homo_sapiens
ENSMUSG00000034732	Pabpc5	99	94.195	ENSAMEG00000020114	PABPC5	99	94.195	Ailuropoda_melanoleuca
ENSMUSG00000034732	Pabpc5	99	95.515	ENSANAG00000005063	PABPC5	99	95.515	Aotus_nancymaae
ENSMUSG00000034732	Pabpc5	99	93.421	ENSBTAG00000019942	PABPC5	99	93.421	Bos_taurus
ENSMUSG00000034732	Pabpc5	99	94.987	ENSCJAG00000003665	PABPC5	99	94.987	Callithrix_jacchus
ENSMUSG00000034732	Pabpc5	99	93.684	ENSCAFG00000017452	PABPC5	99	93.684	Canis_familiaris
ENSMUSG00000034732	Pabpc5	99	93.684	ENSCHIG00000019004	PABPC5	99	93.684	Capra_hircus
ENSMUSG00000034732	Pabpc5	99	94.737	ENSTSYG00000036351	PABPC5	99	94.737	Carlito_syrichta
ENSMUSG00000034732	Pabpc5	99	85.714	ENSCAPG00000010714	PABPC5	99	85.714	Cavia_aperea
ENSMUSG00000034732	Pabpc5	99	91.053	ENSCPOG00000002555	PABPC5	99	91.053	Cavia_porcellus
ENSMUSG00000034732	Pabpc5	99	95.515	ENSCCAG00000032154	PABPC5	99	95.515	Cebus_capucinus
ENSMUSG00000034732	Pabpc5	99	95.251	ENSCATG00000043083	PABPC5	99	95.251	Cercocebus_atys
ENSMUSG00000034732	Pabpc5	99	92.368	ENSCLAG00000000647	PABPC5	99	92.368	Chinchilla_lanigera
ENSMUSG00000034732	Pabpc5	99	95.251	ENSCSAG00000000065	PABPC5	99	95.251	Chlorocebus_sabaeus
ENSMUSG00000034732	Pabpc5	99	95.251	ENSCANG00000011473	PABPC5	99	95.251	Colobus_angolensis_palliatus
ENSMUSG00000034732	Pabpc5	99	92.105	ENSCGRG00000018699	Pabpc5	99	92.105	Cricetulus_griseus_crigri
ENSMUSG00000034732	Pabpc5	99	76.115	ENSETEG00000011832	PABPC5	99	76.115	Echinops_telfairi
ENSMUSG00000034732	Pabpc5	99	94.474	ENSEASG00005014396	PABPC5	99	94.474	Equus_asinus_asinus
ENSMUSG00000034732	Pabpc5	99	94.474	ENSECAG00000003452	PABPC5	99	94.474	Equus_caballus
ENSMUSG00000034732	Pabpc5	99	93.684	ENSFCAG00000004998	PABPC5	99	93.684	Felis_catus
ENSMUSG00000034732	Pabpc5	99	92.895	ENSFDAG00000000126	PABPC5	99	92.895	Fukomys_damarensis
ENSMUSG00000034732	Pabpc5	99	95.515	ENSGGOG00000007622	PABPC5	99	95.515	Gorilla_gorilla
ENSMUSG00000034732	Pabpc5	95	91.743	ENSJJAG00000011960	Pabpc5	100	91.743	Jaculus_jaculus
ENSMUSG00000034732	Pabpc5	99	95.251	ENSMFAG00000024561	PABPC5	99	95.251	Macaca_fascicularis
ENSMUSG00000034732	Pabpc5	99	95.251	ENSMMUG00000011562	PABPC5	99	95.251	Macaca_mulatta
ENSMUSG00000034732	Pabpc5	99	95.251	ENSMNEG00000037604	PABPC5	99	95.251	Macaca_nemestrina
ENSMUSG00000034732	Pabpc5	99	95.251	ENSMLEG00000028318	PABPC5	99	95.251	Mandrillus_leucophaeus
ENSMUSG00000034732	Pabpc5	99	93.947	ENSMICG00000041706	PABPC5	99	93.947	Microcebus_murinus
ENSMUSG00000034732	Pabpc5	99	93.684	ENSMOCG00000001554	Pabpc5	99	93.684	Microtus_ochrogaster
ENSMUSG00000034732	Pabpc5	100	99.475	MGP_CAROLIEiJ_G0033367	Pabpc5	100	99.475	Mus_caroli
ENSMUSG00000034732	Pabpc5	99	99.737	MGP_PahariEiJ_G0031908	Pabpc5	99	99.737	Mus_pahari
ENSMUSG00000034732	Pabpc5	100	100.000	MGP_SPRETEiJ_G0034533	Pabpc5	100	100.000	Mus_spretus
ENSMUSG00000034732	Pabpc5	99	93.421	ENSMPUG00000018465	PABPC5	99	93.421	Mustela_putorius_furo
ENSMUSG00000034732	Pabpc5	99	93.158	ENSMLUG00000008244	PABPC5	99	93.158	Myotis_lucifugus
ENSMUSG00000034732	Pabpc5	95	92.661	ENSNGAG00000004371	Pabpc5	100	92.661	Nannospalax_galili
ENSMUSG00000034732	Pabpc5	99	95.515	ENSNLEG00000035086	PABPC5	99	95.515	Nomascus_leucogenys
ENSMUSG00000034732	Pabpc5	97	95.890	ENSOPRG00000000856	PABPC5	99	95.890	Ochotona_princeps
ENSMUSG00000034732	Pabpc5	99	94.474	ENSOCUG00000010919	PABPC5	99	94.474	Oryctolagus_cuniculus
ENSMUSG00000034732	Pabpc5	99	93.421	ENSOGAG00000006882	PABPC5	99	93.421	Otolemur_garnettii
ENSMUSG00000034732	Pabpc5	99	93.947	ENSOARG00000010260	PABPC5	99	93.947	Ovis_aries
ENSMUSG00000034732	Pabpc5	99	95.515	ENSPPAG00000007378	PABPC5	99	95.515	Pan_paniscus
ENSMUSG00000034732	Pabpc5	99	93.684	ENSPPRG00000010742	PABPC5	99	93.684	Panthera_pardus
ENSMUSG00000034732	Pabpc5	99	93.684	ENSPTIG00000001480	PABPC5	99	93.684	Panthera_tigris_altaica
ENSMUSG00000034732	Pabpc5	99	95.515	ENSPTRG00000022078	PABPC5	99	95.515	Pan_troglodytes
ENSMUSG00000034732	Pabpc5	99	95.251	ENSPANG00000018282	PABPC5	99	95.251	Papio_anubis
ENSMUSG00000034732	Pabpc5	99	93.158	ENSPEMG00000000171	Pabpc5	99	93.158	Peromyscus_maniculatus_bairdii
ENSMUSG00000034732	Pabpc5	99	95.515	ENSPPYG00000020526	PABPC5	99	95.515	Pongo_abelii
ENSMUSG00000034732	Pabpc5	98	95.238	ENSPCAG00000015577	PABPC5	99	95.238	Procavia_capensis
ENSMUSG00000034732	Pabpc5	99	94.211	ENSPCOG00000000676	PABPC5	99	94.211	Propithecus_coquereli
ENSMUSG00000034732	Pabpc5	99	94.474	ENSPVAG00000006465	PABPC5	99	94.474	Pteropus_vampyrus
ENSMUSG00000034732	Pabpc5	99	96.842	ENSRNOG00000003354	Pabpc5	99	96.842	Rattus_norvegicus
ENSMUSG00000034732	Pabpc5	99	95.251	ENSRBIG00000011760	PABPC5	99	95.251	Rhinopithecus_bieti
ENSMUSG00000034732	Pabpc5	99	95.251	ENSRROG00000036708	PABPC5	99	95.251	Rhinopithecus_roxellana
ENSMUSG00000034732	Pabpc5	99	95.251	ENSSBOG00000008658	PABPC5	99	95.251	Saimiri_boliviensis_boliviensis
ENSMUSG00000034732	Pabpc5	99	91.316	ENSSARG00000014012	PABPC5	99	91.316	Sorex_araneus
ENSMUSG00000034732	Pabpc5	99	93.421	ENSSSCG00000040194	PABPC5	99	93.421	Sus_scrofa
ENSMUSG00000034732	Pabpc5	99	95.000	ENSTBEG00000016482	PABPC5	99	95.000	Tupaia_belangeri
ENSMUSG00000034732	Pabpc5	99	93.684	ENSUAMG00000013627	PABPC5	99	93.684	Ursus_americanus
ENSMUSG00000034732	Pabpc5	99	93.421	ENSUMAG00000023934	PABPC5	99	93.421	Ursus_maritimus
ENSMUSG00000034732	Pabpc5	99	93.947	ENSVPAG00000001063	PABPC5	99	93.947	Vicugna_pacos
ENSMUSG00000034732	Pabpc5	99	93.947	ENSVVUG00000013172	PABPC5	99	93.947	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003730	mRNA 3'-UTR binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0008143	poly(A) binding	21873635.	IBA	Function
GO:0008150	biological_process	-	ND	Process
GO:0008266	poly(U) RNA binding	21873635.	IBA	Function
GO:0010494	cytoplasmic stress granule	21873635.	IBA	Component
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component