EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Gene Ontology

Description

Ensembl ID: ENSMUSG00000034826 (Gene tree)
Gene ID: 269113
Gene Symbol: Nup54
Alias: 3110079L04Rik|54kDa
Full Name: nucleoporin 54
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 19680
Position: chr5: 92415540-92435219
Accession: 1920460
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000135112	-	420	-	ENSMUSP00000117237	122 (aa)	-	D3Z5F5
ENSMUST00000142525	-	560	-	-	- (aa)	-	-
ENSMUST00000038514	-	2352	XM_006534956	ENSMUSP00000046540	510 (aa)	XP_006535021	Q8BTS4
ENSMUST00000123694	-	433	-	-	- (aa)	-	-
ENSMUST00000146470	-	445	-	ENSMUSP00000121171	97 (aa)	-	D6RFN7
ENSMUST00000130156	-	397	-	ENSMUSP00000120937	132 (aa)	-	F6UKR5
ENSMUST00000122893	-	631	-	-	- (aa)	-	-
ENSMUST00000201228	-	713	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000034826's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03013	RNA transport	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000034826's network

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	IEA	Component
GO:0005635	nuclear envelope	-	ISO	Component
GO:0005643	nuclear pore	-	ISO	Component
GO:0006605	protein targeting	-	ISO	Process
GO:0006607	NLS-bearing protein import into nucleus	21873635.	IBA	Process
GO:0006913	nucleocytoplasmic transport	-	ISO	Process
GO:0006999	nuclear pore organization	21873635.	IBA	Process
GO:0015031	protein transport	-	IEA	Process
GO:0016020	membrane	-	IEA	Component
GO:0017056	structural constituent of nuclear pore	21873635.	IBA	Function
GO:0017056	structural constituent of nuclear pore	-	ISO	Function
GO:0032991	protein-containing complex	-	ISO	Component
GO:0036228	protein localization to nuclear inner membrane	21873635.	IBA	Process
GO:0042306	regulation of protein import into nucleus	-	ISO	Process
GO:0044613	nuclear pore central transport channel	21873635.	IBA	Component
GO:0051028	mRNA transport	-	IEA	Process
GO:0051260	protein homooligomerization	-	ISO	Process
GO:0051290	protein heterotetramerization	-	ISO	Process
GO:0051291	protein heterooligomerization	-	ISO	Process
GO:0070208	protein heterotrimerization	-	ISO	Process