EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000035139 (Gene tree)
Gene ID: 75420
Gene Symbol: Secisbp2
Alias: 2210413N07Rik|2810012K13Rik|SBP2
Full Name: SECIS binding protein 2
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 32348 bases
Position: chr13:51651697-51684044
Accession: 1922670
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000045740	Ribosomal_L7Ae	PF01248.26	1.7e-20	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000040117	-	3328	XM_006516964	ENSMUSP00000045740	858 (aa)	XP_006517027	Q3U1C4
ENSMUST00000154202	-	556	-	-	- (aa)	-	-
ENSMUST00000146011	-	751	-	-	- (aa)	-	-
ENSMUST00000127360	-	604	-	-	- (aa)	-	-
ENSMUST00000153877	-	784	-	-	- (aa)	-	-
ENSMUST00000110044	-	1915	-	ENSMUSP00000105671	414 (aa)	-	Q8BYU9

Gene Model

Click here to download ENSMUSG00000035139's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000035139's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000035139	Secisbp2	100	71.926	ENSG00000187742	SECISBP2	100	71.926	Homo_sapiens
ENSMUSG00000035139	Secisbp2	98	66.549	ENSAMEG00000003349	SECISBP2	98	66.549	Ailuropoda_melanoleuca
ENSMUSG00000035139	Secisbp2	52	48.676	ENSAOCG00000019052	secisbp2	61	48.163	Amphiprion_ocellaris
ENSMUSG00000035139	Secisbp2	52	48.171	ENSAPEG00000012971	secisbp2	61	47.658	Amphiprion_percula
ENSMUSG00000035139	Secisbp2	53	47.791	ENSATEG00000001095	secisbp2	62	47.800	Anabas_testudineus
ENSMUSG00000035139	Secisbp2	98	41.011	ENSAPLG00000013053	SECISBP2	99	40.899	Anas_platyrhynchos
ENSMUSG00000035139	Secisbp2	92	42.647	ENSACAG00000016594	SECISBP2	95	42.129	Anolis_carolinensis
ENSMUSG00000035139	Secisbp2	100	71.429	ENSANAG00000028208	SECISBP2	100	71.429	Aotus_nancymaae
ENSMUSG00000035139	Secisbp2	53	48.193	ENSACLG00000019976	secisbp2	62	47.800	Astatotilapia_calliptera
ENSMUSG00000035139	Secisbp2	53	48.805	ENSAMXG00000015953	secisbp2	62	48.800	Astyanax_mexicanus
ENSMUSG00000035139	Secisbp2	100	67.283	ENSBTAG00000001939	SECISBP2	100	74.749	Bos_taurus
ENSMUSG00000035139	Secisbp2	100	71.545	ENSCJAG00000007806	SECISBP2	100	71.661	Callithrix_jacchus
ENSMUSG00000035139	Secisbp2	100	68.555	ENSCAFG00000002188	SECISBP2	100	69.133	Canis_familiaris
ENSMUSG00000035139	Secisbp2	98	68.706	ENSCAFG00020007224	SECISBP2	98	69.294	Canis_lupus_dingo
ENSMUSG00000035139	Secisbp2	100	67.052	ENSCHIG00000010657	SECISBP2	99	67.052	Capra_hircus
ENSMUSG00000035139	Secisbp2	88	65.330	ENSTSYG00000014119	SECISBP2	97	66.929	Carlito_syrichta
ENSMUSG00000035139	Secisbp2	84	76.862	ENSCAPG00000008522	SECISBP2	99	76.862	Cavia_aperea
ENSMUSG00000035139	Secisbp2	100	68.293	ENSCPOG00000014270	SECISBP2	100	69.026	Cavia_porcellus
ENSMUSG00000035139	Secisbp2	100	71.893	ENSCCAG00000013350	SECISBP2	100	71.893	Cebus_capucinus
ENSMUSG00000035139	Secisbp2	100	72.074	ENSCATG00000008304	SECISBP2	100	72.074	Cercocebus_atys
ENSMUSG00000035139	Secisbp2	100	70.070	ENSCLAG00000001166	SECISBP2	96	70.418	Chinchilla_lanigera
ENSMUSG00000035139	Secisbp2	100	71.810	ENSCSAG00000007310	SECISBP2	100	71.810	Chlorocebus_sabaeus
ENSMUSG00000035139	Secisbp2	85	75.758	ENSCHOG00000011084	SECISBP2	83	75.758	Choloepus_hoffmanni
ENSMUSG00000035139	Secisbp2	53	53.448	ENSCPBG00000005608	SECISBP2	99	53.462	Chrysemys_picta_bellii
ENSMUSG00000035139	Secisbp2	100	66.125	ENSCANG00000034551	SECISBP2	100	70.744	Colobus_angolensis_palliatus
ENSMUSG00000035139	Secisbp2	100	83.217	ENSCGRG00001013930	Secisbp2	100	83.100	Cricetulus_griseus_chok1gshd
ENSMUSG00000035139	Secisbp2	100	83.333	ENSCGRG00000002600	Secisbp2	100	83.217	Cricetulus_griseus_crigri
ENSMUSG00000035139	Secisbp2	53	49.372	ENSCVAG00000015876	secisbp2	59	49.677	Cyprinodon_variegatus
ENSMUSG00000035139	Secisbp2	54	49.693	ENSDARG00000073892	secisbp2	85	49.383	Danio_rerio
ENSMUSG00000035139	Secisbp2	100	68.171	ENSDNOG00000009432	SECISBP2	100	68.750	Dasypus_novemcinctus
ENSMUSG00000035139	Secisbp2	100	72.093	ENSDORG00000023182	Secisbp2	100	72.093	Dipodomys_ordii
ENSMUSG00000035139	Secisbp2	93	72.727	ENSETEG00000001262	SECISBP2	92	72.727	Echinops_telfairi
ENSMUSG00000035139	Secisbp2	100	68.837	ENSEASG00005013960	SECISBP2	100	68.721	Equus_asinus_asinus
ENSMUSG00000035139	Secisbp2	100	69.070	ENSECAG00000015868	SECISBP2	100	68.953	Equus_caballus
ENSMUSG00000035139	Secisbp2	100	61.085	ENSEEUG00000004400	SECISBP2	100	61.440	Erinaceus_europaeus
ENSMUSG00000035139	Secisbp2	100	66.279	ENSFCAG00000004214	SECISBP2	100	66.899	Felis_catus
ENSMUSG00000035139	Secisbp2	55	52.462	ENSFALG00000012441	SECISBP2	57	52.562	Ficedula_albicollis
ENSMUSG00000035139	Secisbp2	100	69.499	ENSFDAG00000021183	SECISBP2	96	69.849	Fukomys_damarensis
ENSMUSG00000035139	Secisbp2	53	45.988	ENSFHEG00000004095	secisbp2	64	45.187	Fundulus_heteroclitus
ENSMUSG00000035139	Secisbp2	52	46.735	ENSGAFG00000016947	secisbp2	61	45.885	Gambusia_affinis
ENSMUSG00000035139	Secisbp2	52	51.188	ENSGACG00000013757	secisbp2	75	50.324	Gasterosteus_aculeatus
ENSMUSG00000035139	Secisbp2	100	72.242	ENSGGOG00000000453	SECISBP2	100	72.242	Gorilla_gorilla
ENSMUSG00000035139	Secisbp2	100	71.362	ENSHGLG00000014380	SECISBP2	96	71.711	Heterocephalus_glaber_female
ENSMUSG00000035139	Secisbp2	100	71.246	ENSHGLG00100006953	SECISBP2	96	71.595	Heterocephalus_glaber_male
ENSMUSG00000035139	Secisbp2	53	47.800	ENSIPUG00000015393	secisbp2	62	47.400	Ictalurus_punctatus
ENSMUSG00000035139	Secisbp2	100	73.721	ENSSTOG00000000921	SECISBP2	100	73.171	Ictidomys_tridecemlineatus
ENSMUSG00000035139	Secisbp2	100	71.329	ENSJJAG00000020492	Secisbp2	100	71.329	Jaculus_jaculus
ENSMUSG00000035139	Secisbp2	52	48.654	ENSKMAG00000007129	secisbp2	62	49.471	Kryptolebias_marmoratus
ENSMUSG00000035139	Secisbp2	53	49.112	ENSLBEG00000026023	secisbp2	82	40.928	Labrus_bergylta
ENSMUSG00000035139	Secisbp2	51	53.750	ENSLACG00000005735	SECISBP2	87	53.750	Latimeria_chalumnae
ENSMUSG00000035139	Secisbp2	53	50.936	ENSLOCG00000011742	secisbp2	80	50.208	Lepisosteus_oculatus
ENSMUSG00000035139	Secisbp2	100	65.127	ENSLAFG00000012998	SECISBP2	100	65.473	Loxodonta_africana
ENSMUSG00000035139	Secisbp2	100	72.158	ENSMFAG00000003045	SECISBP2	100	72.158	Macaca_fascicularis
ENSMUSG00000035139	Secisbp2	100	72.158	ENSMMUG00000012532	SECISBP2	100	72.158	Macaca_mulatta
ENSMUSG00000035139	Secisbp2	100	72.158	ENSMNEG00000031737	SECISBP2	100	72.158	Macaca_nemestrina
ENSMUSG00000035139	Secisbp2	100	66.589	ENSMLEG00000028868	SECISBP2	100	71.501	Mandrillus_leucophaeus
ENSMUSG00000035139	Secisbp2	53	47.316	ENSMAMG00000006644	secisbp2	62	47.400	Mastacembelus_armatus
ENSMUSG00000035139	Secisbp2	53	48.193	ENSMZEG00005013614	secisbp2	62	47.800	Maylandia_zebra
ENSMUSG00000035139	Secisbp2	100	81.257	ENSMAUG00000008659	Secisbp2	100	81.141	Mesocricetus_auratus
ENSMUSG00000035139	Secisbp2	100	72.242	ENSMICG00000001176	SECISBP2	100	72.590	Microcebus_murinus
ENSMUSG00000035139	Secisbp2	100	85.315	ENSMOCG00000000616	Secisbp2	100	85.315	Microtus_ochrogaster
ENSMUSG00000035139	Secisbp2	100	52.980	ENSMODG00000013365	SECISBP2	100	52.857	Monodelphis_domestica
ENSMUSG00000035139	Secisbp2	53	48.276	ENSMALG00000004907	secisbp2	90	39.084	Monopterus_albus
ENSMUSG00000035139	Secisbp2	100	96.853	MGP_CAROLIEiJ_G0018518	Secisbp2	100	96.853	Mus_caroli
ENSMUSG00000035139	Secisbp2	100	94.522	MGP_PahariEiJ_G0019584	Secisbp2	100	94.406	Mus_pahari
ENSMUSG00000035139	Secisbp2	100	98.725	MGP_SPRETEiJ_G0019399	Secisbp2	100	98.725	Mus_spretus
ENSMUSG00000035139	Secisbp2	65	70.125	ENSMPUG00000008495	-	100	69.589	Mustela_putorius_furo
ENSMUSG00000035139	Secisbp2	99	66.082	ENSMLUG00000012348	SECISBP2	99	66.199	Myotis_lucifugus
ENSMUSG00000035139	Secisbp2	100	77.183	ENSNGAG00000002364	Secisbp2	100	77.183	Nannospalax_galili
ENSMUSG00000035139	Secisbp2	53	48.387	ENSNBRG00000022804	secisbp2	62	48.185	Neolamprologus_brichardi
ENSMUSG00000035139	Secisbp2	100	66.899	ENSNLEG00000008739	SECISBP2	100	71.843	Nomascus_leucogenys
ENSMUSG00000035139	Secisbp2	96	59.036	ENSOPRG00000007588	SECISBP2	99	58.434	Ochotona_princeps
ENSMUSG00000035139	Secisbp2	100	70.629	ENSODEG00000000675	SECISBP2	100	70.629	Octodon_degus
ENSMUSG00000035139	Secisbp2	53	51.422	ENSONIG00000016931	secisbp2	99	51.385	Oreochromis_niloticus
ENSMUSG00000035139	Secisbp2	100	71.080	ENSOCUG00000012932	SECISBP2	100	71.114	Oryctolagus_cuniculus
ENSMUSG00000035139	Secisbp2	50	50.325	ENSORLG00000000343	secisbp2	69	50.217	Oryzias_latipes
ENSMUSG00000035139	Secisbp2	50	49.892	ENSORLG00020012878	secisbp2	67	49.783	Oryzias_latipes_hni
ENSMUSG00000035139	Secisbp2	50	50.542	ENSORLG00015004559	secisbp2	61	50.435	Oryzias_latipes_hsok
ENSMUSG00000035139	Secisbp2	52	48.718	ENSOMEG00000008595	secisbp2	63	49.893	Oryzias_melastigma
ENSMUSG00000035139	Secisbp2	100	69.803	ENSOGAG00000000317	SECISBP2	97	70.035	Otolemur_garnettii
ENSMUSG00000035139	Secisbp2	100	67.011	ENSOARG00000007741	SECISBP2	100	67.011	Ovis_aries
ENSMUSG00000035139	Secisbp2	100	72.125	ENSPPAG00000012385	SECISBP2	100	72.125	Pan_paniscus
ENSMUSG00000035139	Secisbp2	100	66.279	ENSPPRG00000023911	SECISBP2	100	66.899	Panthera_pardus
ENSMUSG00000035139	Secisbp2	98	60.188	ENSPTIG00000009781	SECISBP2	100	59.811	Panthera_tigris_altaica
ENSMUSG00000035139	Secisbp2	100	72.009	ENSPTRG00000021094	SECISBP2	100	72.009	Pan_troglodytes
ENSMUSG00000035139	Secisbp2	100	71.926	ENSPANG00000024873	SECISBP2	100	71.926	Papio_anubis
ENSMUSG00000035139	Secisbp2	50	52.262	ENSPKIG00000006499	SECISBP2	51	51.467	Paramormyrops_kingsleyae
ENSMUSG00000035139	Secisbp2	88	43.562	ENSPSIG00000016257	SECISBP2	96	43.442	Pelodiscus_sinensis
ENSMUSG00000035139	Secisbp2	100	86.247	ENSPEMG00000020212	Secisbp2	100	86.247	Peromyscus_maniculatus_bairdii
ENSMUSG00000035139	Secisbp2	100	54.024	ENSPCIG00000010304	SECISBP2	100	54.024	Phascolarctos_cinereus
ENSMUSG00000035139	Secisbp2	52	49.356	ENSPFOG00000008146	secisbp2	74	48.701	Poecilia_formosa
ENSMUSG00000035139	Secisbp2	52	45.749	ENSPMEG00000013702	secisbp2	62	44.898	Poecilia_mexicana
ENSMUSG00000035139	Secisbp2	52	47.205	ENSPREG00000008117	secisbp2	62	46.347	Poecilia_reticulata
ENSMUSG00000035139	Secisbp2	100	71.777	ENSPPYG00000019359	SECISBP2	100	71.777	Pongo_abelii
ENSMUSG00000035139	Secisbp2	78	58.616	ENSPCAG00000000559	-	80	58.651	Procavia_capensis
ENSMUSG00000035139	Secisbp2	100	71.777	ENSPCOG00000013354	SECISBP2	100	72.125	Propithecus_coquereli
ENSMUSG00000035139	Secisbp2	93	68.539	ENSPVAG00000011013	SECISBP2	90	68.539	Pteropus_vampyrus
ENSMUSG00000035139	Secisbp2	53	48.193	ENSPNYG00000016799	secisbp2	62	47.800	Pundamilia_nyererei
ENSMUSG00000035139	Secisbp2	51	46.061	ENSPNAG00000029922	secisbp2	65	46.061	Pygocentrus_nattereri
ENSMUSG00000035139	Secisbp2	100	91.841	ENSRNOG00000013773	Secisbp2	100	91.841	Rattus_norvegicus
ENSMUSG00000035139	Secisbp2	100	72.106	ENSRBIG00000044115	SECISBP2	100	72.106	Rhinopithecus_bieti
ENSMUSG00000035139	Secisbp2	100	72.106	ENSRROG00000030742	SECISBP2	100	72.106	Rhinopithecus_roxellana
ENSMUSG00000035139	Secisbp2	80	79.234	ENSSBOG00000015392	SECISBP2	91	79.234	Saimiri_boliviensis_boliviensis
ENSMUSG00000035139	Secisbp2	100	55.594	ENSSHAG00000005947	SECISBP2	100	55.758	Sarcophilus_harrisii
ENSMUSG00000035139	Secisbp2	53	47.510	ENSSFOG00015010409	secisbp2	61	46.503	Scleropages_formosus
ENSMUSG00000035139	Secisbp2	53	47.868	ENSSMAG00000008472	secisbp2	84	40.997	Scophthalmus_maximus
ENSMUSG00000035139	Secisbp2	53	48.703	ENSSDUG00000002089	secisbp2	62	48.649	Seriola_dumerili
ENSMUSG00000035139	Secisbp2	53	49.102	ENSSLDG00000003510	secisbp2	62	48.902	Seriola_lalandi_dorsalis
ENSMUSG00000035139	Secisbp2	74	97.260	ENSSARG00000012518	-	75	97.260	Sorex_araneus
ENSMUSG00000035139	Secisbp2	88	42.051	ENSSPUG00000009635	SECISBP2	99	40.554	Sphenodon_punctatus
ENSMUSG00000035139	Secisbp2	51	50.000	ENSSPAG00000013606	secisbp2	59	49.380	Stegastes_partitus
ENSMUSG00000035139	Secisbp2	100	68.391	ENSSSCG00000028033	SECISBP2	100	68.506	Sus_scrofa
ENSMUSG00000035139	Secisbp2	54	57.500	ENSTGUG00000000440	SECISBP2	87	56.875	Taeniopygia_guttata
ENSMUSG00000035139	Secisbp2	53	46.761	ENSTRUG00000016835	secisbp2	67	46.559	Takifugu_rubripes
ENSMUSG00000035139	Secisbp2	55	50.105	ENSTNIG00000015576	secisbp2	96	50.749	Tetraodon_nigroviridis
ENSMUSG00000035139	Secisbp2	76	80.851	ENSTBEG00000000288	SECISBP2	77	80.851	Tupaia_belangeri
ENSMUSG00000035139	Secisbp2	100	67.053	ENSTTRG00000003339	SECISBP2	98	67.517	Tursiops_truncatus
ENSMUSG00000035139	Secisbp2	100	66.860	ENSUAMG00000016243	SECISBP2	100	66.860	Ursus_americanus
ENSMUSG00000035139	Secisbp2	98	65.802	ENSUMAG00000016261	SECISBP2	99	66.038	Ursus_maritimus
ENSMUSG00000035139	Secisbp2	98	66.000	ENSVVUG00000022278	SECISBP2	99	66.588	Vulpes_vulpes
ENSMUSG00000035139	Secisbp2	54	52.556	ENSXETG00000029955	SECISBP2	86	52.245	Xenopus_tropicalis
ENSMUSG00000035139	Secisbp2	52	47.412	ENSXMAG00000003090	secisbp2	61	46.555	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001514	selenocysteine incorporation	21873635.	IBA	Process
GO:0001514	selenocysteine incorporation	24274065.24844465.	IMP	Process
GO:0003723	RNA binding	-	ISO	Function
GO:0003730	mRNA 3'-UTR binding	21873635.	IBA	Function
GO:0003730	mRNA 3'-UTR binding	-	ISO	Function
GO:0005515	protein binding	22992746.	IPI	Function
GO:0005739	mitochondrion	18614015.	HDA	Component
GO:0021756	striatum development	24844465.	IMP	Process
GO:0035368	selenocysteine insertion sequence binding	21873635.	IBA	Function
GO:0035368	selenocysteine insertion sequence binding	22992746.	IDA	Function
GO:0035368	selenocysteine insertion sequence binding	-	ISO	Function
GO:0043021	ribonucleoprotein complex binding	21873635.	IBA	Function
GO:0043021	ribonucleoprotein complex binding	22992746.	IDA	Function
GO:0048666	neuron development	24844465.	IMP	Process
GO:1904571	positive regulation of selenocysteine incorporation	-	ISO	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component
GO:1990904	ribonucleoprotein complex	22992746.	IDA	Component
GO:2000623	negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	24274065.	IMP	Process