EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000035215 (Gene tree)
Gene ID: 66094
Gene Symbol: Lsm7
Alias: 0910001B06Rik|1110033F18Rik
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 2389 bases
Position: chr10:80852821-80855209
Accession: 1913344
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000044993	LSM	PF01423.22	1.1e-20	1	1
ENSMUSP00000151340	LSM	PF01423.22	1.2e-13	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000220406	-	550	-	-	- (aa)	-	-
ENSMUST00000219421	-	435	-	-	- (aa)	-	-
ENSMUST00000217921	-	768	-	-	- (aa)	-	-
ENSMUST00000218931	-	785	-	-	- (aa)	-	-
ENSMUST00000218897	-	571	-	-	- (aa)	-	-
ENSMUST00000035775	-	468	XM_006513948	ENSMUSP00000044993	103 (aa)	-	Q9CQQ8
ENSMUST00000218119	-	609	-	-	- (aa)	-	-
ENSMUST00000220225	-	1129	-	ENSMUSP00000151340	78 (aa)	-	A0A1W2P6N1
ENSMUST00000217781	-	646	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000035215's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03018	RNA degradation	KEGG
mmu03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000035215's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSMUSG00000035215	Lsm7	72	35.526	ENSMUSG00000044155	Lsm8	73	35.526
ENSMUSG00000035215	Lsm7	69	36.620	ENSMUSG00000049124	Gm8186	83	36.620
ENSMUSG00000035215	Lsm7	69	36.620	ENSMUSG00000057278	Snrpg	83	36.620

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000035215	Lsm7	100	97.087	ENSG00000130332	LSM7	100	97.087	Homo_sapiens
ENSMUSG00000035215	Lsm7	91	94.681	ENSAPOG00000015573	lsm7	81	94.681	Acanthochromis_polyacanthus
ENSMUSG00000035215	Lsm7	100	95.146	ENSAMEG00000005484	LSM7	100	95.146	Ailuropoda_melanoleuca
ENSMUSG00000035215	Lsm7	95	92.857	ENSACIG00000006498	lsm7	78	92.857	Amphilophus_citrinellus
ENSMUSG00000035215	Lsm7	97	94.000	ENSAOCG00000001077	lsm7	91	94.000	Amphiprion_ocellaris
ENSMUSG00000035215	Lsm7	99	94.118	ENSAPEG00000000694	lsm7	99	94.118	Amphiprion_percula
ENSMUSG00000035215	Lsm7	99	92.157	ENSAPEG00000024447	lsm7	91	94.000	Amphiprion_percula
ENSMUSG00000035215	Lsm7	99	94.118	ENSATEG00000008557	lsm7	99	94.118	Anabas_testudineus
ENSMUSG00000035215	Lsm7	100	89.320	ENSANAG00000022222	-	100	89.320	Aotus_nancymaae
ENSMUSG00000035215	Lsm7	100	97.087	ENSANAG00000037196	-	100	97.087	Aotus_nancymaae
ENSMUSG00000035215	Lsm7	99	93.137	ENSACLG00000021021	lsm7	99	93.137	Astatotilapia_calliptera
ENSMUSG00000035215	Lsm7	99	94.118	ENSAMXG00000037622	lsm7	99	94.118	Astyanax_mexicanus
ENSMUSG00000035215	Lsm7	100	97.087	ENSBTAG00000004521	LSM7	100	97.087	Bos_taurus
ENSMUSG00000035215	Lsm7	97	57.000	WBGene00003081	lsm-7	96	57.000	Caenorhabditis_elegans
ENSMUSG00000035215	Lsm7	79	95.161	ENSCJAG00000039713	-	76	95.161	Callithrix_jacchus
ENSMUSG00000035215	Lsm7	98	97.030	ENSCAFG00000019409	LSM7	98	97.030	Canis_familiaris
ENSMUSG00000035215	Lsm7	98	97.030	ENSCAFG00020018168	LSM7	74	97.030	Canis_lupus_dingo
ENSMUSG00000035215	Lsm7	100	95.146	ENSCHIG00000023663	LSM7	100	95.146	Capra_hircus
ENSMUSG00000035215	Lsm7	69	95.775	ENSCAPG00000014534	LSM7	100	95.775	Cavia_aperea
ENSMUSG00000035215	Lsm7	100	97.087	ENSCPOG00000014025	LSM7	100	97.087	Cavia_porcellus
ENSMUSG00000035215	Lsm7	98	97.030	ENSCCAG00000035456	LSM7	99	97.030	Cebus_capucinus
ENSMUSG00000035215	Lsm7	100	97.087	ENSCATG00000023543	LSM7	100	97.087	Cercocebus_atys
ENSMUSG00000035215	Lsm7	100	97.087	ENSCLAG00000011635	LSM7	100	97.087	Chinchilla_lanigera
ENSMUSG00000035215	Lsm7	100	97.087	ENSCSAG00000011599	LSM7	100	97.087	Chlorocebus_sabaeus
ENSMUSG00000035215	Lsm7	69	92.958	ENSCPBG00000021317	LSM7	76	92.958	Chrysemys_picta_bellii
ENSMUSG00000035215	Lsm7	93	81.250	ENSCING00000022134	-	97	81.250	Ciona_intestinalis
ENSMUSG00000035215	Lsm7	100	97.087	ENSCANG00000035525	LSM7	100	97.087	Colobus_angolensis_palliatus
ENSMUSG00000035215	Lsm7	87	87.778	ENSCGRG00001016005	-	92	87.778	Cricetulus_griseus_chok1gshd
ENSMUSG00000035215	Lsm7	100	98.058	ENSCGRG00001000807	-	100	98.058	Cricetulus_griseus_chok1gshd
ENSMUSG00000035215	Lsm7	87	87.778	ENSCGRG00000006821	-	92	87.778	Cricetulus_griseus_crigri
ENSMUSG00000035215	Lsm7	98	98.020	ENSCGRG00000014355	-	97	98.020	Cricetulus_griseus_crigri
ENSMUSG00000035215	Lsm7	97	94.000	ENSCSEG00000014900	lsm7	85	94.000	Cynoglossus_semilaevis
ENSMUSG00000035215	Lsm7	97	95.000	ENSCVAG00000021091	lsm7	93	95.000	Cyprinodon_variegatus
ENSMUSG00000035215	Lsm7	99	94.118	ENSDARG00000058328	lsm7	99	94.118	Danio_rerio
ENSMUSG00000035215	Lsm7	99	96.078	ENSDORG00000024460	Lsm7	100	96.078	Dipodomys_ordii
ENSMUSG00000035215	Lsm7	94	75.510	FBgn0261068	LSm7	89	75.510	Drosophila_melanogaster
ENSMUSG00000035215	Lsm7	98	94.059	ENSETEG00000012788	LSM7	99	94.059	Echinops_telfairi
ENSMUSG00000035215	Lsm7	99	85.294	ENSEBUG00000016992	lsm7	98	85.294	Eptatretus_burgeri
ENSMUSG00000035215	Lsm7	81	57.831	ENSEBUG00000010470	-	79	57.831	Eptatretus_burgeri
ENSMUSG00000035215	Lsm7	100	95.146	ENSECAG00000001440	LSM7	66	95.146	Equus_caballus
ENSMUSG00000035215	Lsm7	100	97.087	ENSFCAG00000003445	LSM7	100	97.087	Felis_catus
ENSMUSG00000035215	Lsm7	97	96.000	ENSFALG00000011912	LSM7	99	96.000	Ficedula_albicollis
ENSMUSG00000035215	Lsm7	93	96.875	ENSFDAG00000007661	LSM7	100	96.875	Fukomys_damarensis
ENSMUSG00000035215	Lsm7	88	94.505	ENSFHEG00000006349	lsm7	89	95.000	Fundulus_heteroclitus
ENSMUSG00000035215	Lsm7	99	92.157	ENSGMOG00000013320	lsm7	99	92.157	Gadus_morhua
ENSMUSG00000035215	Lsm7	99	95.098	ENSGAFG00000013902	lsm7	99	95.098	Gambusia_affinis
ENSMUSG00000035215	Lsm7	99	93.137	ENSGACG00000010390	lsm7	99	93.137	Gasterosteus_aculeatus
ENSMUSG00000035215	Lsm7	100	97.087	ENSGGOG00000010172	LSM7	100	97.087	Gorilla_gorilla
ENSMUSG00000035215	Lsm7	99	93.137	ENSHBUG00000004616	lsm7	99	93.137	Haplochromis_burtoni
ENSMUSG00000035215	Lsm7	100	97.087	ENSHGLG00000010587	LSM7	100	97.087	Heterocephalus_glaber_female
ENSMUSG00000035215	Lsm7	100	97.087	ENSHGLG00100000852	LSM7	100	97.087	Heterocephalus_glaber_male
ENSMUSG00000035215	Lsm7	97	93.000	ENSHCOG00000020252	lsm7	99	93.000	Hippocampus_comes
ENSMUSG00000035215	Lsm7	99	96.078	ENSIPUG00000024724	lsm7	99	96.078	Ictalurus_punctatus
ENSMUSG00000035215	Lsm7	98	97.030	ENSSTOG00000028372	LSM7	99	97.030	Ictidomys_tridecemlineatus
ENSMUSG00000035215	Lsm7	98	99.010	ENSJJAG00000001936	Lsm7	98	99.010	Jaculus_jaculus
ENSMUSG00000035215	Lsm7	99	95.098	ENSKMAG00000022151	lsm7	99	95.098	Kryptolebias_marmoratus
ENSMUSG00000035215	Lsm7	99	93.137	ENSLBEG00000005203	lsm7	99	93.137	Labrus_bergylta
ENSMUSG00000035215	Lsm7	99	96.078	ENSLACG00000015700	LSM7	99	96.078	Latimeria_chalumnae
ENSMUSG00000035215	Lsm7	99	95.098	ENSLOCG00000004356	lsm7	99	95.098	Lepisosteus_oculatus
ENSMUSG00000035215	Lsm7	98	97.030	ENSLAFG00000029302	LSM7	98	97.030	Loxodonta_africana
ENSMUSG00000035215	Lsm7	100	97.087	ENSMFAG00000044572	LSM7	100	97.087	Macaca_fascicularis
ENSMUSG00000035215	Lsm7	100	97.087	ENSMMUG00000000452	LSM7	100	97.087	Macaca_mulatta
ENSMUSG00000035215	Lsm7	100	97.087	ENSMNEG00000004393	LSM7	100	97.087	Macaca_nemestrina
ENSMUSG00000035215	Lsm7	100	97.087	ENSMLEG00000030852	LSM7	100	97.087	Mandrillus_leucophaeus
ENSMUSG00000035215	Lsm7	99	93.137	ENSMAMG00000005410	lsm7	99	93.137	Mastacembelus_armatus
ENSMUSG00000035215	Lsm7	99	93.137	ENSMZEG00005028055	lsm7	99	93.137	Maylandia_zebra
ENSMUSG00000035215	Lsm7	99	97.059	ENSMGAG00000000750	LSM7	88	97.059	Meleagris_gallopavo
ENSMUSG00000035215	Lsm7	100	98.058	ENSMAUG00000009276	Lsm7	100	98.058	Mesocricetus_auratus
ENSMUSG00000035215	Lsm7	100	97.087	ENSMICG00000028619	-	100	97.087	Microcebus_murinus
ENSMUSG00000035215	Lsm7	100	96.117	ENSMICG00000009988	-	100	96.117	Microcebus_murinus
ENSMUSG00000035215	Lsm7	100	98.058	ENSMOCG00000016925	Lsm7	100	98.058	Microtus_ochrogaster
ENSMUSG00000035215	Lsm7	99	94.118	ENSMMOG00000019645	lsm7	97	94.118	Mola_mola
ENSMUSG00000035215	Lsm7	99	98.039	ENSMODG00000004722	LSM7	99	98.039	Monodelphis_domestica
ENSMUSG00000035215	Lsm7	99	93.137	ENSMALG00000014511	lsm7	78	93.137	Monopterus_albus
ENSMUSG00000035215	Lsm7	100	100.000	MGP_CAROLIEiJ_G0015607	Lsm7	100	100.000	Mus_caroli
ENSMUSG00000035215	Lsm7	100	100.000	MGP_PahariEiJ_G0031020	Lsm7	100	100.000	Mus_pahari
ENSMUSG00000035215	Lsm7	100	100.000	MGP_SPRETEiJ_G0016425	Lsm7	100	100.000	Mus_spretus
ENSMUSG00000035215	Lsm7	100	90.291	ENSMLUG00000024002	-	94	90.291	Myotis_lucifugus
ENSMUSG00000035215	Lsm7	100	94.175	ENSMLUG00000013097	-	100	94.175	Myotis_lucifugus
ENSMUSG00000035215	Lsm7	100	97.087	ENSNGAG00000021637	Lsm7	100	97.087	Nannospalax_galili
ENSMUSG00000035215	Lsm7	90	93.548	ENSNBRG00000001237	-	82	91.176	Neolamprologus_brichardi
ENSMUSG00000035215	Lsm7	97	93.000	ENSNBRG00000015770	lsm7	86	93.000	Neolamprologus_brichardi
ENSMUSG00000035215	Lsm7	100	97.087	ENSNLEG00000002265	LSM7	100	97.087	Nomascus_leucogenys
ENSMUSG00000035215	Lsm7	100	90.291	ENSODEG00000018769	-	100	90.291	Octodon_degus
ENSMUSG00000035215	Lsm7	100	76.699	ENSODEG00000008190	-	100	76.699	Octodon_degus
ENSMUSG00000035215	Lsm7	100	97.087	ENSODEG00000013590	-	100	97.087	Octodon_degus
ENSMUSG00000035215	Lsm7	99	93.137	ENSONIG00000001801	lsm7	88	93.137	Oreochromis_niloticus
ENSMUSG00000035215	Lsm7	99	94.118	ENSORLG00000023951	lsm7	99	94.118	Oryzias_latipes
ENSMUSG00000035215	Lsm7	99	94.118	ENSORLG00020022226	lsm7	99	94.118	Oryzias_latipes_hni
ENSMUSG00000035215	Lsm7	99	92.157	ENSORLG00015020044	lsm7	93	94.000	Oryzias_latipes_hsok
ENSMUSG00000035215	Lsm7	99	94.118	ENSOMEG00000012806	lsm7	99	94.118	Oryzias_melastigma
ENSMUSG00000035215	Lsm7	100	87.379	ENSOGAG00000024373	-	100	87.379	Otolemur_garnettii
ENSMUSG00000035215	Lsm7	98	97.030	ENSOGAG00000000144	-	99	97.030	Otolemur_garnettii
ENSMUSG00000035215	Lsm7	100	95.146	ENSOARG00000014013	LSM7	100	95.146	Ovis_aries
ENSMUSG00000035215	Lsm7	100	97.087	ENSPPAG00000026500	LSM7	100	97.087	Pan_paniscus
ENSMUSG00000035215	Lsm7	100	97.087	ENSPPRG00000008624	LSM7	100	97.087	Panthera_pardus
ENSMUSG00000035215	Lsm7	98	97.030	ENSPTIG00000016252	LSM7	98	97.030	Panthera_tigris_altaica
ENSMUSG00000035215	Lsm7	100	97.087	ENSPTRG00000010233	LSM7	100	97.087	Pan_troglodytes
ENSMUSG00000035215	Lsm7	100	97.087	ENSPANG00000020668	LSM7	100	97.087	Papio_anubis
ENSMUSG00000035215	Lsm7	99	96.078	ENSPKIG00000011325	lsm7	99	96.078	Paramormyrops_kingsleyae
ENSMUSG00000035215	Lsm7	97	97.000	ENSPSIG00000017149	LSM7	88	97.000	Pelodiscus_sinensis
ENSMUSG00000035215	Lsm7	99	94.118	ENSPMGG00000006498	lsm7	99	94.118	Periophthalmus_magnuspinnatus
ENSMUSG00000035215	Lsm7	99	98.039	ENSPCIG00000030454	LSM7	99	98.039	Phascolarctos_cinereus
ENSMUSG00000035215	Lsm7	99	92.157	ENSPFOG00000012467	lsm7	90	92.157	Poecilia_formosa
ENSMUSG00000035215	Lsm7	99	92.157	ENSPLAG00000000252	lsm7	94	93.069	Poecilia_latipinna
ENSMUSG00000035215	Lsm7	99	92.157	ENSPMEG00000000587	lsm7	94	93.069	Poecilia_mexicana
ENSMUSG00000035215	Lsm7	73	94.737	ENSPREG00000016718	lsm7	65	75.309	Poecilia_reticulata
ENSMUSG00000035215	Lsm7	72	94.595	ENSPPYG00000009348	-	51	94.595	Pongo_abelii
ENSMUSG00000035215	Lsm7	100	97.087	ENSPCOG00000017177	LSM7	100	97.087	Propithecus_coquereli
ENSMUSG00000035215	Lsm7	99	93.137	ENSPNYG00000006938	lsm7	99	93.137	Pundamilia_nyererei
ENSMUSG00000035215	Lsm7	99	94.118	ENSPNAG00000010141	lsm7	99	94.118	Pygocentrus_nattereri
ENSMUSG00000035215	Lsm7	100	99.029	ENSRNOG00000019552	Lsm7	100	99.029	Rattus_norvegicus
ENSMUSG00000035215	Lsm7	100	97.087	ENSRBIG00000035978	LSM7	100	97.087	Rhinopithecus_bieti
ENSMUSG00000035215	Lsm7	100	97.087	ENSRROG00000034044	LSM7	100	97.087	Rhinopithecus_roxellana
ENSMUSG00000035215	Lsm7	86	47.826	YNL147W	-	80	47.826	Saccharomyces_cerevisiae
ENSMUSG00000035215	Lsm7	100	97.087	ENSSBOG00000034899	LSM7	100	97.087	Saimiri_boliviensis_boliviensis
ENSMUSG00000035215	Lsm7	99	94.118	ENSSFOG00015006728	lsm7	99	94.118	Scleropages_formosus
ENSMUSG00000035215	Lsm7	99	92.157	ENSSMAG00000004195	lsm7	92	94.000	Scophthalmus_maximus
ENSMUSG00000035215	Lsm7	99	94.118	ENSSDUG00000001863	lsm7	99	94.118	Seriola_dumerili
ENSMUSG00000035215	Lsm7	99	94.118	ENSSLDG00000016339	lsm7	99	94.118	Seriola_lalandi_dorsalis
ENSMUSG00000035215	Lsm7	99	94.118	ENSSPAG00000015221	lsm7	99	94.118	Stegastes_partitus
ENSMUSG00000035215	Lsm7	98	97.030	ENSSSCG00000013463	LSM7	99	97.030	Sus_scrofa
ENSMUSG00000035215	Lsm7	97	96.000	ENSTGUG00000000067	LSM7	99	96.000	Taeniopygia_guttata
ENSMUSG00000035215	Lsm7	99	94.118	ENSTRUG00000022913	lsm7	99	94.118	Takifugu_rubripes
ENSMUSG00000035215	Lsm7	99	94.118	ENSTNIG00000015525	lsm7	99	94.118	Tetraodon_nigroviridis
ENSMUSG00000035215	Lsm7	67	86.957	ENSTBEG00000016602	LSM7	99	86.957	Tupaia_belangeri
ENSMUSG00000035215	Lsm7	100	95.146	ENSUAMG00000000912	LSM7	86	95.146	Ursus_americanus
ENSMUSG00000035215	Lsm7	98	97.030	ENSUMAG00000006556	LSM7	79	97.030	Ursus_maritimus
ENSMUSG00000035215	Lsm7	69	95.775	ENSVVUG00000002640	LSM7	65	95.775	Vulpes_vulpes
ENSMUSG00000035215	Lsm7	97	96.000	ENSXETG00000022166	lsm7	99	96.000	Xenopus_tropicalis
ENSMUSG00000035215	Lsm7	98	94.059	ENSXCOG00000002572	lsm7	99	94.059	Xiphophorus_couchianus
ENSMUSG00000035215	Lsm7	99	95.098	ENSXMAG00000018630	lsm7	99	95.098	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0000956	nuclear-transcribed mRNA catabolic process	-	IEA	Process
GO:0003723	RNA binding	-	IEA	Function
GO:0005515	protein binding	11591653.	IPI	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005688	U6 snRNP	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0006402	mRNA catabolic process	-	ISO	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0046540	U4/U6 x U5 tri-snRNP complex	-	ISO	Component
GO:0046982	protein heterodimerization activity	-	ISO	Function
GO:0071004	U2-type prespliceosome	21873635.	IBA	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISO	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0120115	Lsm2-8 complex	-	ISO	Component
GO:1990726	Lsm1-7-Pat1 complex	21873635.	IBA	Component