EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000035227 (Gene tree)
Gene ID: 66624
Gene Symbol: Spcs2
Alias: 5730406I15Rik
Full Name: signal peptidase complex subunit 2 homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 25894
Position: chr7: 99837569-99863462
Accession: 1913874
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000208477	-	1553	-	ENSMUSP00000147025	252 (aa)	-	A0A140LJ01
ENSMUST00000208562	-	641	-	-	- (aa)	-	-
ENSMUST00000207406	-	1630	-	ENSMUSP00000146850	177 (aa)	-	A0A140LIK0
ENSMUST00000208939	-	688	-	-	- (aa)	-	-
ENSMUST00000208465	-	736	-	ENSMUSP00000146574	74 (aa)	-	A0A140LHW5
ENSMUST00000207580	-	868	-	ENSMUSP00000147206	123 (aa)	-	A0A140LJG6
ENSMUST00000207137	-	881	-	ENSMUSP00000146562	123 (aa)	-	A0A140LJG6
ENSMUST00000207063	-	727	XM_006508117	ENSMUSP00000146514	190 (aa)	XP_006508180	A0A140LHR3
ENSMUST00000209032	-	1610	-	ENSMUSP00000146406	260 (aa)	-	A0A140LHG8
ENSMUST00000036274	-	2909	-	ENSMUSP00000041152	226 (aa)	-	Q9CYN2

Gene Model

Click here to download ENSMUSG00000035227's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03060	Protein export	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000035227's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000035227	Spcs2	98	39.167	FBgn0030306	Spase25	93	40.212	Drosophila_melanogaster
ENSMUSG00000035227	Spcs2	100	99.187	ENSG00000118363	SPCS2	100	95.789	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005783	endoplasmic reticulum	-	IEA	Component
GO:0005787	signal peptidase complex	21873635.	IBA	Component
GO:0006465	signal peptide processing	21873635.	IBA	Process
GO:0006508	proteolysis	-	IEA	Process
GO:0008233	peptidase activity	21873635.	IBA	Function
GO:0016020	membrane	-	IEA	Component
GO:0016021	integral component of membrane	-	IEA	Component
GO:0016787	hydrolase activity	-	IEA	Function
GO:0043231	intracellular membrane-bounded organelle	-	IEA	Component
GO:0045047	protein targeting to ER	21873635.	IBA	Process