EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000182664	-	600	-	-	- (aa)	-	-
ENSMUST00000182812	-	1093	-	ENSMUSP00000138507	364 (aa)	-	S4R256
ENSMUST00000182569	-	1686	-	-	- (aa)	-	-
ENSMUST00000182988	-	2846	-	ENSMUSP00000138571	934 (aa)	-	S4R2A9
ENSMUST00000182850	-	683	-	-	- (aa)	-	-
ENSMUST00000094578	-	4228	XM_006535192	ENSMUSP00000092157	1230 (aa)	XP_006535255	Q3UPL0
ENSMUST00000182002	-	887	-	ENSMUSP00000138428	296 (aa)	-	S4R1Y8
ENSMUST00000182433	-	1195	-	ENSMUSP00000138366	264 (aa)	-	S4R1T5
ENSMUST00000182171	-	1931	-	-	- (aa)	-	-
ENSMUST00000183247	-	744	-	ENSMUSP00000138129	248 (aa)	-	S4R192
ENSMUST00000182144	-	756	-	-	- (aa)	-	-
ENSMUST00000182886	-	4047	XM_011249555	ENSMUSP00000138213	1191 (aa)	XP_011247857	Q3UPL0

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04141	Protein processing in endoplasmic reticulum	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000035325	Sec31a	100	90.754	ENSG00000138674	SEC31A	100	98.485	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005198	structural molecule activity	21873635.	IBA	Function
GO:0005737	cytoplasm	-	ISO	Component
GO:0005768	endosome	-	ISO	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006886	intracellular protein transport	21873635.	IBA	Process
GO:0006888	ER to Golgi vesicle-mediated transport	21873635.	IBA	Process
GO:0007029	endoplasmic reticulum organization	21873635.	IBA	Process
GO:0015031	protein transport	-	IEA	Process
GO:0016192	vesicle-mediated transport	-	IEA	Process
GO:0030120	vesicle coat	22792322.	ISO	Component
GO:0030127	COPII vesicle coat	21873635.	IBA	Component
GO:0030127	COPII vesicle coat	-	ISO	Component
GO:0030134	COPII-coated ER to Golgi transport vesicle	24239381.	IDA	Component
GO:0030134	COPII-coated ER to Golgi transport vesicle	-	ISO	Component
GO:0031410	cytoplasmic vesicle	-	IEA	Component
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0048306	calcium-dependent protein binding	-	ISO	Function
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component
GO:0051592	response to calcium ion	-	ISO	Process
GO:0070971	endoplasmic reticulum exit site	21873635.	IBA	Component
GO:0070971	endoplasmic reticulum exit site	21640725.25201882.	IDA	Component
GO:0070971	endoplasmic reticulum exit site	-	ISO	Component
GO:0090110	cargo loading into COPII-coated vesicle	21873635.	IBA	Process
GO:0090110	cargo loading into COPII-coated vesicle	-	ISO	Process
GO:0090114	COPII-coated vesicle budding	21873635.	IBA	Process