EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000035378 (Gene tree)
Gene ID: 72171
Gene Symbol: Shq1
Alias: 2810403P18Rik|Grim-1
Full Name: SHQ1 homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 102902 bases
Position: chr6:100568256-100671157
Accession: 1919421
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000108938	SHQ1	PF04925.15	1.2e-68	1	1
ENSMUSP00000127797	SHQ1	PF04925.15	1.2e-68	1	1
ENSMUSP00000086656	SHQ1	PF04925.15	1.6e-19	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000162776	-	750	-	-	- (aa)	-	-
ENSMUST00000170667	-	1990	XM_006506668	ENSMUSP00000127797	569 (aa)	XP_006506731	Q7TMX5
ENSMUST00000113312	-	6816	-	ENSMUSP00000108938	569 (aa)	-	Q7TMX5
ENSMUST00000089245	-	1638	XM_006506669	ENSMUSP00000086656	458 (aa)	XP_006506732	Q7TMX5

Gene Model

Click here to download ENSMUSG00000035378's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000035378's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000035378	Shq1	98	83.607	ENSG00000144736	SHQ1	100	82.000	Homo_sapiens
ENSMUSG00000035378	Shq1	76	61.327	ENSAPOG00000000397	shq1	77	58.836	Acanthochromis_polyacanthus
ENSMUSG00000035378	Shq1	100	85.656	ENSAMEG00000015140	SHQ1	100	75.606	Ailuropoda_melanoleuca
ENSMUSG00000035378	Shq1	76	60.920	ENSACIG00000021249	shq1	71	60.920	Amphilophus_citrinellus
ENSMUSG00000035378	Shq1	78	62.022	ENSAOCG00000023311	shq1	77	60.083	Amphiprion_ocellaris
ENSMUSG00000035378	Shq1	78	61.798	ENSAPEG00000021686	shq1	73	61.099	Amphiprion_percula
ENSMUSG00000035378	Shq1	78	60.403	ENSATEG00000008475	shq1	73	59.955	Anabas_testudineus
ENSMUSG00000035378	Shq1	86	68.033	ENSAPLG00000013926	SHQ1	100	63.458	Anas_platyrhynchos
ENSMUSG00000035378	Shq1	99	64.000	ENSACAG00000014809	SHQ1	85	60.035	Anolis_carolinensis
ENSMUSG00000035378	Shq1	98	81.557	ENSANAG00000029241	SHQ1	98	75.309	Aotus_nancymaae
ENSMUSG00000035378	Shq1	96	58.739	ENSANAG00000030500	-	98	56.028	Aotus_nancymaae
ENSMUSG00000035378	Shq1	78	57.978	ENSACLG00000023077	shq1	79	53.242	Astatotilapia_calliptera
ENSMUSG00000035378	Shq1	76	55.093	ENSAMXG00000043822	shq1	86	50.595	Astyanax_mexicanus
ENSMUSG00000035378	Shq1	100	81.967	ENSBTAG00000005436	SHQ1	100	74.138	Bos_taurus
ENSMUSG00000035378	Shq1	76	32.658	WBGene00021655	Y48A5A.1	97	32.957	Caenorhabditis_elegans
ENSMUSG00000035378	Shq1	98	81.557	ENSCJAG00000015131	SHQ1	98	74.692	Callithrix_jacchus
ENSMUSG00000035378	Shq1	100	84.426	ENSCAFG00000006434	SHQ1	99	75.433	Canis_familiaris
ENSMUSG00000035378	Shq1	100	84.426	ENSCAFG00020016743	SHQ1	99	75.433	Canis_lupus_dingo
ENSMUSG00000035378	Shq1	100	81.967	ENSCHIG00000012271	SHQ1	91	73.276	Capra_hircus
ENSMUSG00000035378	Shq1	99	73.038	ENSTSYG00000014439	SHQ1	99	70.877	Carlito_syrichta
ENSMUSG00000035378	Shq1	90	64.491	ENSCAPG00000009343	SHQ1	96	87.662	Cavia_aperea
ENSMUSG00000035378	Shq1	98	83.197	ENSCPOG00000011443	SHQ1	99	72.913	Cavia_porcellus
ENSMUSG00000035378	Shq1	96	60.428	ENSCCAG00000036087	-	97	57.876	Cebus_capucinus
ENSMUSG00000035378	Shq1	98	65.608	ENSCCAG00000027080	SHQ1	98	64.727	Cebus_capucinus
ENSMUSG00000035378	Shq1	100	82.377	ENSCATG00000041238	SHQ1	100	73.276	Cercocebus_atys
ENSMUSG00000035378	Shq1	98	83.607	ENSCLAG00000004206	SHQ1	99	73.958	Chinchilla_lanigera
ENSMUSG00000035378	Shq1	84	71.079	ENSCSAG00000011514	SHQ1	100	69.857	Chlorocebus_sabaeus
ENSMUSG00000035378	Shq1	51	92.500	ENSCHOG00000003273	-	100	70.145	Choloepus_hoffmanni
ENSMUSG00000035378	Shq1	96	70.213	ENSCPBG00000006441	SHQ1	93	61.228	Chrysemys_picta_bellii
ENSMUSG00000035378	Shq1	68	48.529	ENSCING00000008013	-	95	41.002	Ciona_intestinalis
ENSMUSG00000035378	Shq1	62	60.465	ENSCSAVG00000002332	-	98	40.682	Ciona_savignyi
ENSMUSG00000035378	Shq1	99	82.377	ENSCANG00000039295	SHQ1	100	73.345	Colobus_angolensis_palliatus
ENSMUSG00000035378	Shq1	100	94.262	ENSCGRG00001012583	Shq1	100	94.262	Cricetulus_griseus_chok1gshd
ENSMUSG00000035378	Shq1	100	94.262	ENSCGRG00000009849	Shq1	100	94.262	Cricetulus_griseus_crigri
ENSMUSG00000035378	Shq1	73	61.962	ENSCSEG00000007829	shq1	71	61.062	Cynoglossus_semilaevis
ENSMUSG00000035378	Shq1	76	60.412	ENSCVAG00000020049	shq1	92	52.050	Cyprinodon_variegatus
ENSMUSG00000035378	Shq1	76	59.268	ENSDARG00000058522	shq1	74	56.250	Danio_rerio
ENSMUSG00000035378	Shq1	100	84.426	ENSDNOG00000033937	SHQ1	100	74.697	Dasypus_novemcinctus
ENSMUSG00000035378	Shq1	96	84.158	ENSETEG00000005766	SHQ1	99	65.157	Echinops_telfairi
ENSMUSG00000035378	Shq1	78	46.222	ENSEBUG00000005445	shq1	99	45.111	Eptatretus_burgeri
ENSMUSG00000035378	Shq1	100	84.836	ENSEASG00005002237	SHQ1	100	76.817	Equus_asinus_asinus
ENSMUSG00000035378	Shq1	93	85.246	ENSECAG00000015673	SHQ1	95	77.580	Equus_caballus
ENSMUSG00000035378	Shq1	100	79.918	ENSEEUG00000010568	SHQ1	100	72.145	Erinaceus_europaeus
ENSMUSG00000035378	Shq1	55	81.818	ENSELUG00000003476	shq1	81	58.763	Esox_lucius
ENSMUSG00000035378	Shq1	100	85.246	ENSFCAG00000012781	SHQ1	100	76.174	Felis_catus
ENSMUSG00000035378	Shq1	99	70.082	ENSFALG00000013428	SHQ1	94	59.965	Ficedula_albicollis
ENSMUSG00000035378	Shq1	98	82.787	ENSFDAG00000005595	SHQ1	91	69.900	Fukomys_damarensis
ENSMUSG00000035378	Shq1	76	60.592	ENSFHEG00000017552	shq1	93	52.465	Fundulus_heteroclitus
ENSMUSG00000035378	Shq1	57	75.610	ENSGMOG00000007350	shq1	100	59.194	Gadus_morhua
ENSMUSG00000035378	Shq1	98	70.293	ENSGALG00000007798	SHQ1	93	59.965	Gallus_gallus
ENSMUSG00000035378	Shq1	57	78.049	ENSGACG00000011797	shq1	100	60.202	Gasterosteus_aculeatus
ENSMUSG00000035378	Shq1	98	83.197	ENSGGOG00000034818	SHQ1	98	74.211	Gorilla_gorilla
ENSMUSG00000035378	Shq1	78	57.753	ENSHBUG00000010857	shq1	78	56.250	Haplochromis_burtoni
ENSMUSG00000035378	Shq1	98	83.607	ENSHGLG00000003637	SHQ1	91	72.449	Heterocephalus_glaber_female
ENSMUSG00000035378	Shq1	98	83.607	ENSHGLG00100011957	SHQ1	91	72.696	Heterocephalus_glaber_male
ENSMUSG00000035378	Shq1	89	57.207	ENSHCOG00000010799	shq1	90	52.142	Hippocampus_comes
ENSMUSG00000035378	Shq1	76	59.050	ENSIPUG00000001247	shq1	74	59.050	Ictalurus_punctatus
ENSMUSG00000035378	Shq1	98	81.557	ENSSTOG00000010043	SHQ1	100	72.792	Ictidomys_tridecemlineatus
ENSMUSG00000035378	Shq1	98	85.246	ENSJJAG00000017611	Shq1	98	85.246	Jaculus_jaculus
ENSMUSG00000035378	Shq1	76	61.276	ENSKMAG00000004457	shq1	95	52.069	Kryptolebias_marmoratus
ENSMUSG00000035378	Shq1	99	65.060	ENSLACG00000014243	SHQ1	87	55.385	Latimeria_chalumnae
ENSMUSG00000035378	Shq1	93	62.719	ENSLOCG00000009970	shq1	97	56.007	Lepisosteus_oculatus
ENSMUSG00000035378	Shq1	98	55.654	ENSMFAG00000037396	-	98	54.145	Macaca_fascicularis
ENSMUSG00000035378	Shq1	100	82.787	ENSMFAG00000039148	SHQ1	100	73.448	Macaca_fascicularis
ENSMUSG00000035378	Shq1	98	55.300	ENSMMUG00000021761	-	98	53.792	Macaca_mulatta
ENSMUSG00000035378	Shq1	90	81.633	ENSMMUG00000009571	SHQ1	96	72.180	Macaca_mulatta
ENSMUSG00000035378	Shq1	100	82.787	ENSMNEG00000032667	SHQ1	100	73.448	Macaca_nemestrina
ENSMUSG00000035378	Shq1	100	82.377	ENSMLEG00000038493	SHQ1	100	73.448	Mandrillus_leucophaeus
ENSMUSG00000035378	Shq1	78	59.641	ENSMAMG00000023432	shq1	68	58.969	Mastacembelus_armatus
ENSMUSG00000035378	Shq1	78	57.978	ENSMZEG00005008649	shq1	78	56.458	Maylandia_zebra
ENSMUSG00000035378	Shq1	98	69.295	ENSMGAG00000009640	SHQ1	93	58.348	Meleagris_gallopavo
ENSMUSG00000035378	Shq1	100	93.852	ENSMAUG00000022030	Shq1	100	93.852	Mesocricetus_auratus
ENSMUSG00000035378	Shq1	98	84.490	ENSMICG00000009224	SHQ1	98	74.306	Microcebus_murinus
ENSMUSG00000035378	Shq1	100	93.852	ENSMOCG00000017836	Shq1	100	93.852	Microtus_ochrogaster
ENSMUSG00000035378	Shq1	78	59.009	ENSMMOG00000010569	shq1	81	54.959	Mola_mola
ENSMUSG00000035378	Shq1	93	68.852	ENSMODG00000003926	SHQ1	78	72.769	Monodelphis_domestica
ENSMUSG00000035378	Shq1	77	61.905	ENSMALG00000008870	shq1	91	53.451	Monopterus_albus
ENSMUSG00000035378	Shq1	100	99.180	MGP_CAROLIEiJ_G0028689	Shq1	100	99.180	Mus_caroli
ENSMUSG00000035378	Shq1	100	95.902	MGP_PahariEiJ_G0022440	Shq1	100	95.902	Mus_pahari
ENSMUSG00000035378	Shq1	100	98.770	MGP_SPRETEiJ_G0029717	Shq1	100	98.770	Mus_spretus
ENSMUSG00000035378	Shq1	98	82.787	ENSMPUG00000017006	SHQ1	96	75.132	Mustela_putorius_furo
ENSMUSG00000035378	Shq1	90	69.714	ENSMLUG00000013539	SHQ1	98	70.058	Myotis_lucifugus
ENSMUSG00000035378	Shq1	98	74.823	ENSNGAG00000023317	Shq1	100	74.468	Nannospalax_galili
ENSMUSG00000035378	Shq1	62	56.461	ENSNBRG00000024004	shq1	75	54.731	Neolamprologus_brichardi
ENSMUSG00000035378	Shq1	98	84.016	ENSNLEG00000002731	SHQ1	98	75.395	Nomascus_leucogenys
ENSMUSG00000035378	Shq1	83	64.815	ENSMEUG00000009350	-	89	64.815	Notamacropus_eugenii
ENSMUSG00000035378	Shq1	99	70.466	ENSODEG00000009192	SHQ1	99	81.124	Octodon_degus
ENSMUSG00000035378	Shq1	78	57.753	ENSONIG00000020264	shq1	78	56.250	Oreochromis_niloticus
ENSMUSG00000035378	Shq1	99	83.128	ENSOCUG00000016695	SHQ1	99	74.188	Oryctolagus_cuniculus
ENSMUSG00000035378	Shq1	76	60.417	ENSORLG00000023538	shq1	78	59.725	Oryzias_latipes
ENSMUSG00000035378	Shq1	76	60.880	ENSORLG00020003697	shq1	77	60.183	Oryzias_latipes_hni
ENSMUSG00000035378	Shq1	76	60.880	ENSORLG00015021040	shq1	78	60.183	Oryzias_latipes_hsok
ENSMUSG00000035378	Shq1	76	61.574	ENSOMEG00000001225	shq1	81	59.031	Oryzias_melastigma
ENSMUSG00000035378	Shq1	98	82.591	ENSOGAG00000003898	SHQ1	100	74.869	Otolemur_garnettii
ENSMUSG00000035378	Shq1	99	80.894	ENSOARG00000009547	SHQ1	99	73.057	Ovis_aries
ENSMUSG00000035378	Shq1	98	58.290	ENSPPAG00000043263	-	98	56.894	Pan_paniscus
ENSMUSG00000035378	Shq1	98	84.016	ENSPPAG00000027714	SHQ1	98	74.386	Pan_paniscus
ENSMUSG00000035378	Shq1	100	85.246	ENSPPRG00000004769	SHQ1	100	76.034	Panthera_pardus
ENSMUSG00000035378	Shq1	100	78.205	ENSPTIG00000011478	SHQ1	100	71.724	Panthera_tigris_altaica
ENSMUSG00000035378	Shq1	98	57.592	ENSPTRG00000048303	-	98	56.195	Pan_troglodytes
ENSMUSG00000035378	Shq1	98	84.016	ENSPTRG00000015106	SHQ1	98	74.386	Pan_troglodytes
ENSMUSG00000035378	Shq1	100	81.557	ENSPANG00000002881	SHQ1	100	73.966	Papio_anubis
ENSMUSG00000035378	Shq1	65	68.919	ENSPKIG00000021517	shq1	76	57.078	Paramormyrops_kingsleyae
ENSMUSG00000035378	Shq1	97	69.167	ENSPSIG00000005536	SHQ1	93	61.579	Pelodiscus_sinensis
ENSMUSG00000035378	Shq1	78	57.753	ENSPMGG00000008838	shq1	75	57.494	Periophthalmus_magnuspinnatus
ENSMUSG00000035378	Shq1	100	93.852	ENSPEMG00000000251	Shq1	100	93.852	Peromyscus_maniculatus_bairdii
ENSMUSG00000035378	Shq1	76	56.561	ENSPMAG00000005372	shq1	98	56.787	Petromyzon_marinus
ENSMUSG00000035378	Shq1	76	58.770	ENSPFOG00000003118	shq1	79	58.770	Poecilia_formosa
ENSMUSG00000035378	Shq1	61	56.897	ENSPMEG00000011076	shq1	96	47.826	Poecilia_mexicana
ENSMUSG00000035378	Shq1	70	56.127	ENSPREG00000000591	shq1	92	50.000	Poecilia_reticulata
ENSMUSG00000035378	Shq1	98	82.787	ENSPPYG00000013717	SHQ1	98	74.035	Pongo_abelii
ENSMUSG00000035378	Shq1	94	83.607	ENSPCAG00000009035	SHQ1	99	74.690	Procavia_capensis
ENSMUSG00000035378	Shq1	98	82.996	ENSPCOG00000008415	SHQ1	99	74.048	Propithecus_coquereli
ENSMUSG00000035378	Shq1	98	82.377	ENSPVAG00000017392	SHQ1	99	75.704	Pteropus_vampyrus
ENSMUSG00000035378	Shq1	78	57.978	ENSPNYG00000003878	shq1	78	56.458	Pundamilia_nyererei
ENSMUSG00000035378	Shq1	76	59.677	ENSPNAG00000026840	shq1	79	55.647	Pygocentrus_nattereri
ENSMUSG00000035378	Shq1	100	95.902	ENSRNOG00000005433	Shq1	91	95.902	Rattus_norvegicus
ENSMUSG00000035378	Shq1	99	77.200	ENSRBIG00000026280	SHQ1	100	69.739	Rhinopithecus_bieti
ENSMUSG00000035378	Shq1	99	82.377	ENSRROG00000034126	SHQ1	100	73.345	Rhinopithecus_roxellana
ENSMUSG00000035378	Shq1	98	67.190	ENSSBOG00000021038	SHQ1	98	66.960	Saimiri_boliviensis_boliviensis
ENSMUSG00000035378	Shq1	93	72.500	ENSSHAG00000015077	SHQ1	96	63.303	Sarcophilus_harrisii
ENSMUSG00000035378	Shq1	77	62.100	ENSSFOG00015016241	shq1	87	58.197	Scleropages_formosus
ENSMUSG00000035378	Shq1	78	62.302	ENSSMAG00000016151	shq1	72	62.302	Scophthalmus_maximus
ENSMUSG00000035378	Shq1	78	60.532	ENSSDUG00000011986	shq1	72	60.976	Seriola_dumerili
ENSMUSG00000035378	Shq1	78	60.045	ENSSLDG00000013908	shq1	71	60.860	Seriola_lalandi_dorsalis
ENSMUSG00000035378	Shq1	98	67.677	ENSSARG00000007119	SHQ1	98	58.844	Sorex_araneus
ENSMUSG00000035378	Shq1	75	68.627	ENSSPUG00000011526	-	87	59.657	Sphenodon_punctatus
ENSMUSG00000035378	Shq1	98	80.738	ENSSSCG00000011518	SHQ1	99	72.396	Sus_scrofa
ENSMUSG00000035378	Shq1	99	64.835	ENSTGUG00000009933	SHQ1	100	59.380	Taeniopygia_guttata
ENSMUSG00000035378	Shq1	66	66.176	ENSTRUG00000009446	shq1	75	57.461	Takifugu_rubripes
ENSMUSG00000035378	Shq1	73	56.250	ENSTNIG00000007354	shq1	98	55.357	Tetraodon_nigroviridis
ENSMUSG00000035378	Shq1	72	89.362	ENSTBEG00000011295	SHQ1	78	89.362	Tupaia_belangeri
ENSMUSG00000035378	Shq1	97	83.197	ENSTTRG00000005320	SHQ1	98	76.241	Tursiops_truncatus
ENSMUSG00000035378	Shq1	98	85.652	ENSUMAG00000024031	SHQ1	98	74.382	Ursus_maritimus
ENSMUSG00000035378	Shq1	92	63.039	ENSVPAG00000004880	SHQ1	100	63.602	Vicugna_pacos
ENSMUSG00000035378	Shq1	100	84.426	ENSVVUG00000013906	SHQ1	99	75.433	Vulpes_vulpes
ENSMUSG00000035378	Shq1	78	65.158	ENSXETG00000032215	shq1	77	62.264	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000493	box H/ACA snoRNP assembly	21873635.	IBA	Process
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0022618	ribonucleoprotein complex assembly	-	ISO	Process
GO:0043065	positive regulation of apoptotic process	-	ISO	Process
GO:0051082	unfolded protein binding	21873635.	IBA	Function
GO:2000233	negative regulation of rRNA processing	-	ISO	Process