EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000035529 (Gene tree)
Gene ID: 72843
Gene Symbol: Prdm4
Alias: 1700031E19Rik|2810470D21Rik|SC-1|SC1
Full Name: PR domain containing 4
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 25177 bases
Position: chr10:85891966-85917142
Accession: 1920093
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000041942	zf-C2H2	PF00096.26	4.2e-20	1	2
ENSMUSP00000041942	zf-C2H2	PF00096.26	4.2e-20	2	2
ENSMUSP00000151931	zf-C2H2	PF00096.26	4.6e-20	1	2
ENSMUSP00000151931	zf-C2H2	PF00096.26	4.6e-20	2	2
ENSMUSP00000041942	zf-met	PF12874.7	0.00025	1	1
ENSMUSP00000151931	zf-met	PF12874.7	0.00027	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000218289	-	1918	-	-	- (aa)	-	-
ENSMUST00000218743	-	729	-	-	- (aa)	-	-
ENSMUST00000219370	-	3772	-	ENSMUSP00000151513	120 (aa)	-	A0A1W2P779
ENSMUST00000218969	-	831	-	ENSMUSP00000151593	153 (aa)	-	A0A1W2P7C2
ENSMUST00000220032	-	3962	XM_006514193	ENSMUSP00000151931	803 (aa)	XP_006514256	Q80V63
ENSMUST00000037646	-	3877	XM_017314116	ENSMUSP00000041942	796 (aa)	XP_017169605	A0A1X7SB67
ENSMUST00000219112	-	592	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000035529's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04722	Neurotrophin signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000035529's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000035529	Prdm4	100	94.354	ENSG00000110851	PRDM4	100	94.624	Homo_sapiens
ENSMUSG00000035529	Prdm4	100	94.236	ENSAMEG00000016174	PRDM4	99	94.110	Ailuropoda_melanoleuca
ENSMUSG00000035529	Prdm4	100	86.558	ENSAPLG00000009846	PRDM4	99	86.432	Anas_platyrhynchos
ENSMUSG00000035529	Prdm4	100	94.103	ENSANAG00000024800	PRDM4	99	93.350	Aotus_nancymaae
ENSMUSG00000035529	Prdm4	100	94.479	ENSBTAG00000012999	PRDM4	99	94.730	Bos_taurus
ENSMUSG00000035529	Prdm4	100	93.726	ENSCJAG00000015261	PRDM4	99	93.977	Callithrix_jacchus
ENSMUSG00000035529	Prdm4	100	93.852	ENSCAFG00000001788	PRDM4	99	94.103	Canis_familiaris
ENSMUSG00000035529	Prdm4	100	93.852	ENSCAFG00020004916	PRDM4	99	94.103	Canis_lupus_dingo
ENSMUSG00000035529	Prdm4	100	94.354	ENSCHIG00000019409	PRDM4	99	94.605	Capra_hircus
ENSMUSG00000035529	Prdm4	100	94.103	ENSTSYG00000009248	PRDM4	99	94.354	Carlito_syrichta
ENSMUSG00000035529	Prdm4	100	88.861	ENSCAPG00000013937	PRDM4	99	88.861	Cavia_aperea
ENSMUSG00000035529	Prdm4	100	88.323	ENSCPOG00000022385	PRDM4	100	88.323	Cavia_porcellus
ENSMUSG00000035529	Prdm4	100	94.228	ENSCCAG00000036033	PRDM4	99	94.479	Cebus_capucinus
ENSMUSG00000035529	Prdm4	100	93.977	ENSCATG00000044797	PRDM4	99	94.228	Cercocebus_atys
ENSMUSG00000035529	Prdm4	100	90.299	ENSCLAG00000007545	PRDM4	100	90.547	Chinchilla_lanigera
ENSMUSG00000035529	Prdm4	100	94.228	ENSCSAG00000002896	PRDM4	99	94.479	Chlorocebus_sabaeus
ENSMUSG00000035529	Prdm4	71	95.283	ENSCHOG00000001744	PRDM4	85	95.283	Choloepus_hoffmanni
ENSMUSG00000035529	Prdm4	100	87.312	ENSCPBG00000023187	PRDM4	100	87.060	Chrysemys_picta_bellii
ENSMUSG00000035529	Prdm4	100	94.103	ENSCANG00000021804	PRDM4	99	94.354	Colobus_angolensis_palliatus
ENSMUSG00000035529	Prdm4	100	95.019	ENSCGRG00001015102	-	100	94.894	Cricetulus_griseus_chok1gshd
ENSMUSG00000035529	Prdm4	96	94.832	ENSCGRG00000004044	-	100	94.703	Cricetulus_griseus_crigri
ENSMUSG00000035529	Prdm4	100	93.601	ENSDNOG00000032478	PRDM4	99	94.524	Dasypus_novemcinctus
ENSMUSG00000035529	Prdm4	100	80.528	ENSDORG00000015081	-	100	91.883	Dipodomys_ordii
ENSMUSG00000035529	Prdm4	94	45.570	ENSEBUG00000003775	prdm4	99	45.920	Eptatretus_burgeri
ENSMUSG00000035529	Prdm4	100	94.354	ENSECAG00000015423	PRDM4	99	94.650	Equus_caballus
ENSMUSG00000035529	Prdm4	94	91.600	ENSEEUG00000006569	PRDM4	99	91.467	Erinaceus_europaeus
ENSMUSG00000035529	Prdm4	99	59.903	ENSELUG00000015265	prdm4	99	59.903	Esox_lucius
ENSMUSG00000035529	Prdm4	100	94.228	ENSFCAG00000022478	PRDM4	99	94.479	Felis_catus
ENSMUSG00000035529	Prdm4	100	86.809	ENSFALG00000013342	PRDM4	100	86.809	Ficedula_albicollis
ENSMUSG00000035529	Prdm4	100	86.466	ENSGALG00000012619	PRDM4	99	86.341	Gallus_gallus
ENSMUSG00000035529	Prdm4	100	86.809	ENSGAGG00000002763	PRDM4	95	86.683	Gopherus_agassizii
ENSMUSG00000035529	Prdm4	100	94.228	ENSGGOG00000001244	PRDM4	99	94.479	Gorilla_gorilla
ENSMUSG00000035529	Prdm4	100	91.709	ENSHGLG00000004590	PRDM4	98	91.709	Heterocephalus_glaber_female
ENSMUSG00000035529	Prdm4	100	91.045	ENSHGLG00100007464	PRDM4	100	91.045	Heterocephalus_glaber_male
ENSMUSG00000035529	Prdm4	99	59.219	ENSIPUG00000024162	prdm4	93	61.227	Ictalurus_punctatus
ENSMUSG00000035529	Prdm4	100	93.726	ENSSTOG00000016168	PRDM4	99	94.228	Ictidomys_tridecemlineatus
ENSMUSG00000035529	Prdm4	100	93.962	ENSJJAG00000022448	-	95	93.225	Jaculus_jaculus
ENSMUSG00000035529	Prdm4	100	71.040	ENSLACG00000007452	PRDM4	99	71.906	Latimeria_chalumnae
ENSMUSG00000035529	Prdm4	79	42.480	ENSLOCG00000017092	prdm4	100	53.247	Lepisosteus_oculatus
ENSMUSG00000035529	Prdm4	98	94.036	ENSLAFG00000001483	PRDM4	100	94.289	Loxodonta_africana
ENSMUSG00000035529	Prdm4	100	94.354	ENSMFAG00000041862	PRDM4	99	94.605	Macaca_fascicularis
ENSMUSG00000035529	Prdm4	100	94.354	ENSMMUG00000015550	PRDM4	99	94.605	Macaca_mulatta
ENSMUSG00000035529	Prdm4	100	94.103	ENSMNEG00000032319	PRDM4	99	94.354	Macaca_nemestrina
ENSMUSG00000035529	Prdm4	100	94.228	ENSMLEG00000039607	PRDM4	99	94.479	Mandrillus_leucophaeus
ENSMUSG00000035529	Prdm4	100	78.348	ENSMGAG00000012815	PRDM4	100	78.223	Meleagris_gallopavo
ENSMUSG00000035529	Prdm4	100	93.225	ENSMICG00000007807	PRDM4	99	93.493	Microcebus_murinus
ENSMUSG00000035529	Prdm4	100	94.724	ENSMOCG00000000753	Prdm4	99	94.724	Microtus_ochrogaster
ENSMUSG00000035529	Prdm4	100	97.637	MGP_PahariEiJ_G0031398	Prdm4	100	97.637	Mus_pahari
ENSMUSG00000035529	Prdm4	100	99.247	MGP_SPRETEiJ_G0016505	Prdm4	100	99.247	Mus_spretus
ENSMUSG00000035529	Prdm4	100	88.015	ENSMPUG00000012238	PRDM4	99	87.516	Mustela_putorius_furo
ENSMUSG00000035529	Prdm4	100	93.601	ENSMLUG00000000767	PRDM4	99	93.852	Myotis_lucifugus
ENSMUSG00000035529	Prdm4	100	94.605	ENSNGAG00000018627	Prdm4	100	94.856	Nannospalax_galili
ENSMUSG00000035529	Prdm4	100	94.354	ENSNLEG00000006748	PRDM4	99	94.605	Nomascus_leucogenys
ENSMUSG00000035529	Prdm4	89	86.385	ENSMEUG00000004495	PRDM4	89	86.385	Notamacropus_eugenii
ENSMUSG00000035529	Prdm4	89	93.452	ENSOPRG00000010192	PRDM4	89	94.643	Ochotona_princeps
ENSMUSG00000035529	Prdm4	100	88.191	ENSODEG00000014750	PRDM4	99	88.442	Octodon_degus
ENSMUSG00000035529	Prdm4	100	88.206	ENSOANG00000005526	PRDM4	99	88.206	Ornithorhynchus_anatinus
ENSMUSG00000035529	Prdm4	94	94.993	ENSOCUG00000012859	PRDM4	96	94.993	Oryctolagus_cuniculus
ENSMUSG00000035529	Prdm4	100	93.977	ENSOGAG00000011945	PRDM4	100	93.977	Otolemur_garnettii
ENSMUSG00000035529	Prdm4	100	94.228	ENSOARG00000017955	PRDM4	99	94.479	Ovis_aries
ENSMUSG00000035529	Prdm4	100	94.605	ENSPPAG00000038438	PRDM4	99	94.856	Pan_paniscus
ENSMUSG00000035529	Prdm4	100	94.228	ENSPPRG00000004144	PRDM4	99	94.479	Panthera_pardus
ENSMUSG00000035529	Prdm4	100	94.228	ENSPTIG00000005847	PRDM4	99	94.479	Panthera_tigris_altaica
ENSMUSG00000035529	Prdm4	100	94.479	ENSPTRG00000005400	PRDM4	99	94.730	Pan_troglodytes
ENSMUSG00000035529	Prdm4	100	94.354	ENSPANG00000022084	PRDM4	99	94.605	Papio_anubis
ENSMUSG00000035529	Prdm4	99	59.026	ENSPKIG00000000875	prdm4	99	59.264	Paramormyrops_kingsleyae
ENSMUSG00000035529	Prdm4	92	79.735	ENSPSIG00000012066	PRDM4	100	80.492	Pelodiscus_sinensis
ENSMUSG00000035529	Prdm4	100	95.985	ENSPEMG00000014598	Prdm4	100	96.110	Peromyscus_maniculatus_bairdii
ENSMUSG00000035529	Prdm4	100	86.500	ENSPCIG00000009471	PRDM4	99	86.500	Phascolarctos_cinereus
ENSMUSG00000035529	Prdm4	100	94.228	ENSPPYG00000004913	PRDM4	99	94.479	Pongo_abelii
ENSMUSG00000035529	Prdm4	83	93.042	ENSPCAG00000009987	PRDM4	83	93.366	Procavia_capensis
ENSMUSG00000035529	Prdm4	100	93.350	ENSPCOG00000021060	PRDM4	99	93.601	Propithecus_coquereli
ENSMUSG00000035529	Prdm4	100	93.734	ENSPVAG00000001596	PRDM4	99	94.236	Pteropus_vampyrus
ENSMUSG00000035529	Prdm4	100	96.241	ENSRNOG00000004962	Prdm4	100	96.241	Rattus_norvegicus
ENSMUSG00000035529	Prdm4	100	94.103	ENSRBIG00000035488	PRDM4	99	94.354	Rhinopithecus_bieti
ENSMUSG00000035529	Prdm4	100	94.228	ENSRROG00000012779	PRDM4	99	94.479	Rhinopithecus_roxellana
ENSMUSG00000035529	Prdm4	100	94.228	ENSSBOG00000000403	PRDM4	99	94.479	Saimiri_boliviensis_boliviensis
ENSMUSG00000035529	Prdm4	99	63.333	ENSSFOG00015023358	prdm4	98	63.333	Scleropages_formosus
ENSMUSG00000035529	Prdm4	100	94.354	ENSSSCG00000000160	PRDM4	99	94.605	Sus_scrofa
ENSMUSG00000035529	Prdm4	100	86.809	ENSTGUG00000010962	-	99	86.809	Taeniopygia_guttata
ENSMUSG00000035529	Prdm4	74	88.225	ENSTBEG00000001732	PRDM4	84	88.225	Tupaia_belangeri
ENSMUSG00000035529	Prdm4	100	94.479	ENSTTRG00000011056	PRDM4	99	94.730	Tursiops_truncatus
ENSMUSG00000035529	Prdm4	100	93.977	ENSUAMG00000022796	PRDM4	99	94.228	Ursus_americanus
ENSMUSG00000035529	Prdm4	100	93.977	ENSUMAG00000017231	PRDM4	99	94.228	Ursus_maritimus
ENSMUSG00000035529	Prdm4	100	94.228	ENSVPAG00000002215	PRDM4	100	94.730	Vicugna_pacos
ENSMUSG00000035529	Prdm4	100	93.852	ENSVVUG00000023397	PRDM4	99	94.103	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	23918801.	IMP	Function
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	23918801.	IMP	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0005123	death receptor binding	-	ISO	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	23048031.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	23048031.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006366	transcription by RNA polymerase II	-	IEA	Process
GO:0008168	methyltransferase activity	-	IEA	Function
GO:0010629	negative regulation of gene expression	-	ISO	Process
GO:0016740	transferase activity	-	IEA	Function
GO:0030308	negative regulation of cell growth	-	ISO	Process
GO:0031490	chromatin DNA binding	21873635.	IBA	Function
GO:0032259	methylation	-	IEA	Process
GO:0035097	histone methyltransferase complex	23048031.	IPI	Component
GO:0043565	sequence-specific DNA binding	21873635.	IBA	Function
GO:0045944	positive regulation of transcription by RNA polymerase II	23918801.	IMP	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:1990226	histone methyltransferase binding	21873635.	IBA	Function
GO:1990226	histone methyltransferase binding	23048031.	IPI	Function
GO:2000177	regulation of neural precursor cell proliferation	-	ISO	Process
GO:2000736	regulation of stem cell differentiation	-	ISO	Process