EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000035575 (Gene tree)
Gene ID: 216987
Gene Symbol: Utp6
Alias: 4732497O03Rik|HCA66
Full Name: UTP6 small subunit processome component
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 30070 bases
Position: chr11:79932321-79962390
Accession: 2445193
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000046643	U3_assoc_6	PF08640.11	4.4e-25	1	1
ENSMUSP00000103876	U3_assoc_6	PF08640.11	4.4e-25	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000131921	-	648	-	-	- (aa)	-	-
ENSMUST00000108241	-	2308	-	ENSMUSP00000103876	597 (aa)	-	Q8VCY6
ENSMUST00000146127	-	559	-	-	- (aa)	-	-
ENSMUST00000043152	-	3877	-	ENSMUSP00000046643	597 (aa)	-	Q8VCY6

Gene Model

Click here to download ENSMUSG00000035575's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000035575's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000035575	Utp6	100	86.097	ENSG00000108651	UTP6	99	86.097	Homo_sapiens
ENSMUSG00000035575	Utp6	100	55.444	ENSAPOG00000000435	utp6	99	55.444	Acanthochromis_polyacanthus
ENSMUSG00000035575	Utp6	99	85.738	ENSAMEG00000005443	UTP6	99	85.738	Ailuropoda_melanoleuca
ENSMUSG00000035575	Utp6	100	54.439	ENSACIG00000004124	utp6	99	54.439	Amphilophus_citrinellus
ENSMUSG00000035575	Utp6	100	55.109	ENSAOCG00000016812	utp6	99	55.109	Amphiprion_ocellaris
ENSMUSG00000035575	Utp6	100	54.774	ENSAPEG00000023565	utp6	99	54.774	Amphiprion_percula
ENSMUSG00000035575	Utp6	100	55.779	ENSATEG00000003401	utp6	99	55.779	Anabas_testudineus
ENSMUSG00000035575	Utp6	99	64.686	ENSAPLG00000005821	UTP6	98	64.686	Anas_platyrhynchos
ENSMUSG00000035575	Utp6	100	64.992	ENSACAG00000009472	UTP6	99	64.992	Anolis_carolinensis
ENSMUSG00000035575	Utp6	100	86.265	ENSANAG00000034603	UTP6	99	86.265	Aotus_nancymaae
ENSMUSG00000035575	Utp6	100	57.119	ENSACLG00000006728	utp6	99	57.119	Astatotilapia_calliptera
ENSMUSG00000035575	Utp6	100	56.449	ENSAMXG00000009478	utp6	99	56.449	Astyanax_mexicanus
ENSMUSG00000035575	Utp6	99	75.168	ENSBTAG00000015612	UTP6	99	75.168	Bos_taurus
ENSMUSG00000035575	Utp6	99	73.490	ENSBTAG00000003769	-	98	73.490	Bos_taurus
ENSMUSG00000035575	Utp6	100	86.600	ENSCJAG00000014115	UTP6	99	86.600	Callithrix_jacchus
ENSMUSG00000035575	Utp6	100	86.265	ENSCAFG00000018507	UTP6	99	86.265	Canis_familiaris
ENSMUSG00000035575	Utp6	100	86.265	ENSCAFG00020014678	UTP6	99	86.265	Canis_lupus_dingo
ENSMUSG00000035575	Utp6	99	75.168	ENSCHIG00000009726	-	99	75.168	Capra_hircus
ENSMUSG00000035575	Utp6	99	75.336	ENSCHIG00000017954	-	99	75.336	Capra_hircus
ENSMUSG00000035575	Utp6	100	76.717	ENSTSYG00000002202	UTP6	99	76.717	Carlito_syrichta
ENSMUSG00000035575	Utp6	90	75.138	ENSCAPG00000017595	UTP6	98	75.138	Cavia_aperea
ENSMUSG00000035575	Utp6	100	88.610	ENSCPOG00000014294	UTP6	100	88.610	Cavia_porcellus
ENSMUSG00000035575	Utp6	100	79.564	ENSCCAG00000033318	-	99	79.564	Cebus_capucinus
ENSMUSG00000035575	Utp6	100	86.097	ENSCATG00000034868	UTP6	99	86.097	Cercocebus_atys
ENSMUSG00000035575	Utp6	100	89.615	ENSCLAG00000007274	UTP6	99	89.615	Chinchilla_lanigera
ENSMUSG00000035575	Utp6	100	85.595	ENSCSAG00000006595	UTP6	99	85.595	Chlorocebus_sabaeus
ENSMUSG00000035575	Utp6	88	65.217	ENSCHOG00000010940	-	88	65.217	Choloepus_hoffmanni
ENSMUSG00000035575	Utp6	100	68.677	ENSCPBG00000004652	UTP6	99	68.677	Chrysemys_picta_bellii
ENSMUSG00000035575	Utp6	99	31.715	ENSCING00000022947	-	99	31.715	Ciona_intestinalis
ENSMUSG00000035575	Utp6	53	38.390	ENSCSAVG00000011416	-	98	38.390	Ciona_savignyi
ENSMUSG00000035575	Utp6	87	64.313	ENSCANG00000031141	UTP6	89	64.313	Colobus_angolensis_palliatus
ENSMUSG00000035575	Utp6	100	93.970	ENSCGRG00001000046	Utp6	100	93.970	Cricetulus_griseus_chok1gshd
ENSMUSG00000035575	Utp6	95	94.170	ENSCGRG00000011543	Utp6	100	94.170	Cricetulus_griseus_crigri
ENSMUSG00000035575	Utp6	100	52.152	ENSCSEG00000013422	utp6	99	67.213	Cynoglossus_semilaevis
ENSMUSG00000035575	Utp6	100	54.941	ENSCVAG00000020322	utp6	99	54.941	Cyprinodon_variegatus
ENSMUSG00000035575	Utp6	100	54.104	ENSDARG00000098433	utp6	100	64.641	Danio_rerio
ENSMUSG00000035575	Utp6	100	87.772	ENSDNOG00000037018	UTP6	99	87.772	Dasypus_novemcinctus
ENSMUSG00000035575	Utp6	91	87.363	ENSDORG00000003843	Utp6	100	87.363	Dipodomys_ordii
ENSMUSG00000035575	Utp6	100	87.772	ENSEASG00005010870	UTP6	99	87.772	Equus_asinus_asinus
ENSMUSG00000035575	Utp6	100	87.437	ENSECAG00000022217	UTP6	99	87.437	Equus_caballus
ENSMUSG00000035575	Utp6	100	55.444	ENSELUG00000006618	utp6	99	55.444	Esox_lucius
ENSMUSG00000035575	Utp6	100	84.114	ENSFCAG00000015795	UTP6	99	84.114	Felis_catus
ENSMUSG00000035575	Utp6	100	66.164	ENSFALG00000002282	UTP6	99	66.164	Ficedula_albicollis
ENSMUSG00000035575	Utp6	100	88.275	ENSFDAG00000019506	UTP6	100	88.275	Fukomys_damarensis
ENSMUSG00000035575	Utp6	100	55.184	ENSFHEG00000010373	utp6	99	55.184	Fundulus_heteroclitus
ENSMUSG00000035575	Utp6	100	54.774	ENSGMOG00000011958	utp6	99	54.774	Gadus_morhua
ENSMUSG00000035575	Utp6	100	65.662	ENSGALG00000003260	UTP6	99	65.662	Gallus_gallus
ENSMUSG00000035575	Utp6	100	55.184	ENSGAFG00000008505	utp6	99	55.184	Gambusia_affinis
ENSMUSG00000035575	Utp6	100	55.779	ENSGACG00000019424	utp6	99	55.779	Gasterosteus_aculeatus
ENSMUSG00000035575	Utp6	100	67.337	ENSGAGG00000004820	UTP6	99	67.337	Gopherus_agassizii
ENSMUSG00000035575	Utp6	99	69.128	ENSGGOG00000026003	-	99	69.128	Gorilla_gorilla
ENSMUSG00000035575	Utp6	100	85.930	ENSGGOG00000013569	UTP6	99	85.930	Gorilla_gorilla
ENSMUSG00000035575	Utp6	100	57.119	ENSHBUG00000018668	utp6	99	57.119	Haplochromis_burtoni
ENSMUSG00000035575	Utp6	99	81.987	ENSHGLG00000008642	-	99	81.987	Heterocephalus_glaber_female
ENSMUSG00000035575	Utp6	100	88.275	ENSHGLG00000010332	UTP6	100	88.275	Heterocephalus_glaber_female
ENSMUSG00000035575	Utp6	95	82.953	ENSHGLG00100006047	-	99	82.953	Heterocephalus_glaber_male
ENSMUSG00000035575	Utp6	100	85.260	ENSHGLG00100014271	-	100	85.260	Heterocephalus_glaber_male
ENSMUSG00000035575	Utp6	100	54.439	ENSHCOG00000017277	utp6	99	54.439	Hippocampus_comes
ENSMUSG00000035575	Utp6	100	55.611	ENSIPUG00000022587	Utp6	99	55.611	Ictalurus_punctatus
ENSMUSG00000035575	Utp6	100	87.940	ENSSTOG00000015875	UTP6	100	87.940	Ictidomys_tridecemlineatus
ENSMUSG00000035575	Utp6	100	55.779	ENSKMAG00000021631	utp6	99	55.779	Kryptolebias_marmoratus
ENSMUSG00000035575	Utp6	100	56.616	ENSLBEG00000002115	utp6	99	56.616	Labrus_bergylta
ENSMUSG00000035575	Utp6	100	65.829	ENSLACG00000017158	UTP6	99	65.829	Latimeria_chalumnae
ENSMUSG00000035575	Utp6	91	59.817	ENSLOCG00000013797	utp6	90	59.817	Lepisosteus_oculatus
ENSMUSG00000035575	Utp6	100	85.595	ENSLAFG00000013008	UTP6	99	85.595	Loxodonta_africana
ENSMUSG00000035575	Utp6	99	61.037	ENSMFAG00000041904	-	99	61.037	Macaca_fascicularis
ENSMUSG00000035575	Utp6	100	86.097	ENSMFAG00000038842	UTP6	99	86.097	Macaca_fascicularis
ENSMUSG00000035575	Utp6	100	86.097	ENSMMUG00000020403	UTP6	99	86.097	Macaca_mulatta
ENSMUSG00000035575	Utp6	100	86.097	ENSMNEG00000039480	UTP6	99	86.097	Macaca_nemestrina
ENSMUSG00000035575	Utp6	99	68.013	ENSMLEG00000039364	-	99	68.013	Mandrillus_leucophaeus
ENSMUSG00000035575	Utp6	100	70.401	ENSMLEG00000032174	UTP6	99	70.401	Mandrillus_leucophaeus
ENSMUSG00000035575	Utp6	100	55.184	ENSMAMG00000002228	utp6	99	55.184	Mastacembelus_armatus
ENSMUSG00000035575	Utp6	100	57.119	ENSMZEG00005023895	utp6	99	57.119	Maylandia_zebra
ENSMUSG00000035575	Utp6	95	65.845	ENSMGAG00000008111	UTP6	99	65.845	Meleagris_gallopavo
ENSMUSG00000035575	Utp6	100	94.305	ENSMAUG00000021895	Utp6	100	94.305	Mesocricetus_auratus
ENSMUSG00000035575	Utp6	100	81.240	ENSMICG00000002632	UTP6	99	81.240	Microcebus_murinus
ENSMUSG00000035575	Utp6	100	93.300	ENSMOCG00000014163	Utp6	100	93.300	Microtus_ochrogaster
ENSMUSG00000035575	Utp6	100	54.181	ENSMMOG00000008653	utp6	99	66.102	Mola_mola
ENSMUSG00000035575	Utp6	100	68.174	ENSMODG00000019206	UTP6	99	68.174	Monodelphis_domestica
ENSMUSG00000035575	Utp6	100	55.686	ENSMALG00000021112	utp6	99	55.686	Monopterus_albus
ENSMUSG00000035575	Utp6	100	99.330	MGP_CAROLIEiJ_G0016828	Utp6	100	99.330	Mus_caroli
ENSMUSG00000035575	Utp6	100	80.602	MGP_PahariEiJ_G0017965	Utp6	100	80.602	Mus_pahari
ENSMUSG00000035575	Utp6	100	99.162	MGP_SPRETEiJ_G0017672	Utp6	100	99.162	Mus_spretus
ENSMUSG00000035575	Utp6	100	84.255	ENSMPUG00000014581	UTP6	99	84.255	Mustela_putorius_furo
ENSMUSG00000035575	Utp6	100	86.767	ENSMLUG00000016422	UTP6	99	86.767	Myotis_lucifugus
ENSMUSG00000035575	Utp6	100	90.285	ENSNGAG00000015482	Utp6	100	90.285	Nannospalax_galili
ENSMUSG00000035575	Utp6	100	56.951	ENSNBRG00000019714	utp6	99	56.951	Neolamprologus_brichardi
ENSMUSG00000035575	Utp6	100	85.092	ENSNLEG00000011009	UTP6	99	85.092	Nomascus_leucogenys
ENSMUSG00000035575	Utp6	89	71.631	ENSOPRG00000008446	-	89	71.631	Ochotona_princeps
ENSMUSG00000035575	Utp6	66	85.654	ENSODEG00000011971	UTP6	100	85.654	Octodon_degus
ENSMUSG00000035575	Utp6	100	57.119	ENSONIG00000018090	utp6	99	57.119	Oreochromis_niloticus
ENSMUSG00000035575	Utp6	98	66.497	ENSOANG00000004279	UTP6	99	66.497	Ornithorhynchus_anatinus
ENSMUSG00000035575	Utp6	100	84.422	ENSOCUG00000016980	UTP6	99	84.422	Oryctolagus_cuniculus
ENSMUSG00000035575	Utp6	100	56.522	ENSORLG00000003546	utp6	64	56.522	Oryzias_latipes
ENSMUSG00000035575	Utp6	100	56.522	ENSORLG00020010377	utp6	99	56.522	Oryzias_latipes_hni
ENSMUSG00000035575	Utp6	100	55.853	ENSORLG00015008893	utp6	99	55.853	Oryzias_latipes_hsok
ENSMUSG00000035575	Utp6	100	56.187	ENSOMEG00000017487	utp6	99	56.187	Oryzias_melastigma
ENSMUSG00000035575	Utp6	87	76.190	ENSOGAG00000004511	UTP6	100	76.190	Otolemur_garnettii
ENSMUSG00000035575	Utp6	99	75.168	ENSOARG00000013474	UTP6	99	75.168	Ovis_aries
ENSMUSG00000035575	Utp6	99	69.799	ENSPPAG00000016895	-	99	69.799	Pan_paniscus
ENSMUSG00000035575	Utp6	100	86.265	ENSPPAG00000038089	UTP6	99	86.265	Pan_paniscus
ENSMUSG00000035575	Utp6	100	87.605	ENSPPRG00000001010	UTP6	99	87.605	Panthera_pardus
ENSMUSG00000035575	Utp6	100	87.605	ENSPTIG00000013913	UTP6	99	87.605	Panthera_tigris_altaica
ENSMUSG00000035575	Utp6	99	69.631	ENSPTRG00000044798	-	99	69.631	Pan_troglodytes
ENSMUSG00000035575	Utp6	100	86.265	ENSPTRG00000008977	UTP6	99	86.265	Pan_troglodytes
ENSMUSG00000035575	Utp6	99	67.960	ENSPANG00000034274	-	99	67.960	Papio_anubis
ENSMUSG00000035575	Utp6	100	83.278	ENSPANG00000023113	UTP6	99	83.278	Papio_anubis
ENSMUSG00000035575	Utp6	100	55.017	ENSPKIG00000004653	utp6	99	55.017	Paramormyrops_kingsleyae
ENSMUSG00000035575	Utp6	100	67.672	ENSPSIG00000012435	UTP6	99	67.672	Pelodiscus_sinensis
ENSMUSG00000035575	Utp6	100	55.518	ENSPMGG00000009548	utp6	99	55.518	Periophthalmus_magnuspinnatus
ENSMUSG00000035575	Utp6	100	93.802	ENSPEMG00000014081	Utp6	100	93.802	Peromyscus_maniculatus_bairdii
ENSMUSG00000035575	Utp6	93	45.648	ENSPMAG00000009561	utp6	99	45.648	Petromyzon_marinus
ENSMUSG00000035575	Utp6	100	69.682	ENSPCIG00000029968	UTP6	86	69.682	Phascolarctos_cinereus
ENSMUSG00000035575	Utp6	100	55.017	ENSPFOG00000013918	utp6	99	55.017	Poecilia_formosa
ENSMUSG00000035575	Utp6	100	55.351	ENSPLAG00000017825	utp6	99	55.351	Poecilia_latipinna
ENSMUSG00000035575	Utp6	100	54.849	ENSPMEG00000008133	utp6	99	54.849	Poecilia_mexicana
ENSMUSG00000035575	Utp6	100	54.271	ENSPREG00000013108	utp6	99	54.271	Poecilia_reticulata
ENSMUSG00000035575	Utp6	100	82.580	ENSPPYG00000008154	UTP6	99	82.580	Pongo_abelii
ENSMUSG00000035575	Utp6	63	60.638	ENSPCAG00000014878	-	69	60.638	Procavia_capensis
ENSMUSG00000035575	Utp6	100	80.737	ENSPCOG00000010224	UTP6	99	80.737	Propithecus_coquereli
ENSMUSG00000035575	Utp6	100	82.747	ENSPVAG00000015759	UTP6	99	82.747	Pteropus_vampyrus
ENSMUSG00000035575	Utp6	100	56.784	ENSPNYG00000002290	utp6	99	56.784	Pundamilia_nyererei
ENSMUSG00000035575	Utp6	100	53.434	ENSPNAG00000027370	utp6	99	53.434	Pygocentrus_nattereri
ENSMUSG00000035575	Utp6	100	93.132	ENSRNOG00000014209	Utp6	100	93.132	Rattus_norvegicus
ENSMUSG00000035575	Utp6	100	85.260	ENSRBIG00000020822	UTP6	99	85.260	Rhinopithecus_bieti
ENSMUSG00000035575	Utp6	100	85.260	ENSRROG00000036838	UTP6	99	85.260	Rhinopithecus_roxellana
ENSMUSG00000035575	Utp6	100	55.760	ENSSFOG00015005978	utp6	99	55.760	Scleropages_formosus
ENSMUSG00000035575	Utp6	100	55.611	ENSSMAG00000014772	utp6	99	55.611	Scophthalmus_maximus
ENSMUSG00000035575	Utp6	100	56.114	ENSSDUG00000000329	utp6	99	56.114	Seriola_dumerili
ENSMUSG00000035575	Utp6	100	55.946	ENSSLDG00000016724	utp6	99	55.946	Seriola_lalandi_dorsalis
ENSMUSG00000035575	Utp6	99	75.336	ENSSARG00000010778	UTP6	99	75.336	Sorex_araneus
ENSMUSG00000035575	Utp6	100	67.504	ENSSPUG00000005273	UTP6	99	67.504	Sphenodon_punctatus
ENSMUSG00000035575	Utp6	100	53.601	ENSSPAG00000011871	utp6	99	53.601	Stegastes_partitus
ENSMUSG00000035575	Utp6	100	85.930	ENSSSCG00000017745	UTP6	99	85.930	Sus_scrofa
ENSMUSG00000035575	Utp6	100	66.054	ENSTGUG00000004999	UTP6	99	66.054	Taeniopygia_guttata
ENSMUSG00000035575	Utp6	100	54.941	ENSTRUG00000012005	utp6	100	54.941	Takifugu_rubripes
ENSMUSG00000035575	Utp6	100	55.276	ENSTNIG00000003235	utp6	100	55.276	Tetraodon_nigroviridis
ENSMUSG00000035575	Utp6	67	76.243	ENSTBEG00000005388	-	67	76.243	Tupaia_belangeri
ENSMUSG00000035575	Utp6	100	85.595	ENSTTRG00000009911	UTP6	99	85.595	Tursiops_truncatus
ENSMUSG00000035575	Utp6	99	86.242	ENSUMAG00000015139	UTP6	99	86.242	Ursus_maritimus
ENSMUSG00000035575	Utp6	100	86.097	ENSVPAG00000005782	UTP6	99	86.097	Vicugna_pacos
ENSMUSG00000035575	Utp6	100	86.432	ENSVVUG00000012238	UTP6	99	86.432	Vulpes_vulpes
ENSMUSG00000035575	Utp6	99	51.174	ENSXETG00000020057	utp6	99	51.174	Xenopus_tropicalis
ENSMUSG00000035575	Utp6	100	54.333	ENSXCOG00000013626	utp6	99	54.333	Xiphophorus_couchianus
ENSMUSG00000035575	Utp6	100	54.348	ENSXMAG00000017414	utp6	99	54.348	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0005634	nucleus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006364	rRNA processing	-	IEA	Process
GO:0006396	RNA processing	-	IEA	Process
GO:0030515	snoRNA binding	-	IEA	Function
GO:0032040	small-subunit processome	21873635.	IBA	Component
GO:0034388	Pwp2p-containing subcomplex of 90S preribosome	21873635.	IBA	Component