EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000035623 (Gene tree)
Gene ID: 233532
Gene Symbol: Rsf1
Alias: 4832420A03Rik|C030033M12Rik|Hbxap|XAP8|p325
Full Name: remodeling and spacing factor 1
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 112890
Position: chr7: 97579889-97692778
Accession: 2682305
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000123731	-	2493	-	ENSMUSP00000145663	14 (aa)	-	A0A0U1RNQ5
ENSMUST00000127891	-	754	-	ENSMUSP00000145905	109 (aa)	-	A0A0U1RPA7
ENSMUST00000135270	-	764	-	ENSMUSP00000145808	121 (aa)	-	A0A0U1RP31
ENSMUST00000107153	-	11124	-	ENSMUSP00000102771	1441 (aa)	-	E9PWW9
ENSMUST00000206866	-	3635	-	-	- (aa)	-	-
ENSMUST00000156060	-	5695	-	-	- (aa)	-	-
ENSMUST00000150288	-	542	-	-	- (aa)	-	-
ENSMUST00000205536	-	3085	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000035623's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000035623's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000035623	Rsf1	99	82.809	ENSG00000048649	RSF1	100	97.826	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000123	histone acetyltransferase complex	21873635.	IBA	Component
GO:0000790	nuclear chromatin	21873635.	IBA	Component
GO:0004402	histone acetyltransferase activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006334	nucleosome assembly	-	ISO	Process
GO:0006338	chromatin remodeling	-	ISO	Process
GO:0006352	DNA-templated transcription, initiation	-	ISO	Process
GO:0016584	nucleosome positioning	-	ISO	Process
GO:0031213	RSF complex	-	ISO	Component
GO:0042393	histone binding	21873635.	IBA	Function
GO:0042393	histone binding	-	ISO	Function
GO:0043392	negative regulation of DNA binding	-	ISO	Process
GO:0045892	negative regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0045893	positive regulation of transcription, DNA-templated	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0050434	positive regulation of viral transcription	-	ISO	Process