EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000035726 (Gene tree)
Gene ID: 114741
Gene Symbol: Supt16
Alias: Cdc68|Fact140|Spt16|Supt16h
Full Name: suppressor of Ty 16
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 37003
Position: chr14: 52160414-52197416
Accession: 1890948
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000227577	-	548	-	-	- (aa)	-	-
ENSMUST00000046709	-	4673	-	ENSMUSP00000042283	1047 (aa)	-	G3X956

Gene Model

Click here to download ENSMUSG00000035726's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000035726's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000035726	Supt16	96	60.750	FBgn0002183	dre4	93	60.753	Drosophila_melanogaster
ENSMUSG00000035726	Supt16	100	98.758	ENSG00000092201	SUPT16H	100	98.758	Homo_sapiens
ENSMUSG00000035726	Supt16	96	33.522	YGL207W	SPT16	99	34.597	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	ISO	Component
GO:0005694	chromosome	-	IEA	Component
GO:0006260	DNA replication	-	IEA	Process
GO:0006281	DNA repair	-	IEA	Process
GO:0006368	transcription elongation from RNA polymerase II promoter	21873635.	IBA	Process
GO:0006974	cellular response to DNA damage stimulus	-	IEA	Process
GO:0031491	nucleosome binding	21873635.	IBA	Function
GO:0032968	positive regulation of transcription elongation from RNA polymerase II promoter	21873635.	IBA	Process
GO:0034724	DNA replication-independent nucleosome organization	21873635.	IBA	Process
GO:0035101	FACT complex	21873635.	IBA	Component
GO:0042393	histone binding	21873635.	IBA	Function