EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25993413	Label-Free Protein RNA Interactome Analysis Identifies Khsrp Signaling Downstream of the p38/Mk2 Kinase Complex as a Critical Modulator of Cell Cycle Progression	IC & MEF	2015	Boucas J	DOI: 10.1371/journal.pone.0125745
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000212148	-	368	-	ENSMUSP00000148372	53 (aa)	-	A0A1D5RLH6
ENSMUST00000212654	-	1780	-	ENSMUSP00000148681	470 (aa)	-	A0A1D5RM94
ENSMUST00000212230	-	1407	-	ENSMUSP00000148716	406 (aa)	-	A0A1D5RMC1
ENSMUST00000212343	-	742	-	-	- (aa)	-	-
ENSMUST00000041769	-	4627	XM_006530880	ENSMUSP00000045480	492 (aa)	XP_006530943	Q6PDL0
ENSMUST00000212678	-	144	-	-	- (aa)	-	-
ENSMUST00000212040	-	1650	-	-	- (aa)	-	-
ENSMUST00000211804	-	599	-	-	- (aa)	-	-

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu04145	Phagosome	KEGG
mmu04962	Vasopressin-regulated water reabsorption	KEGG
mmu05132	Salmonella infection	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000035770	Dync1li2	100	96.951	ENSG00000135720	DYNC1LI2	100	100.000	Homo_sapiens
ENSMUSG00000035770	Dync1li2	99	62.471	ENSG00000144635	DYNC1LI1	98	64.384	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000166	nucleotide binding	-	IEA	Function
GO:0000226	microtubule cytoskeleton organization	21873635.	IBA	Process
GO:0000226	microtubule cytoskeleton organization	19540120.	IMP	Process
GO:0000776	kinetochore	-	ISO	Component
GO:0003774	motor activity	-	IEA	Function
GO:0003777	microtubule motor activity	-	IEA	Function
GO:0005515	protein binding	19540120.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005737	cytoplasm	-	IEA	Component
GO:0005764	lysosome	-	ISO	Component
GO:0005770	late endosome	-	ISO	Component
GO:0005813	centrosome	21873635.	IBA	Component
GO:0005813	centrosome	-	ISO	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005868	cytoplasmic dynein complex	21873635.	IBA	Component
GO:0005874	microtubule	-	IEA	Component
GO:0007018	microtubule-based movement	21873635.	IBA	Process
GO:0030286	dynein complex	-	IEA	Component
GO:0045504	dynein heavy chain binding	21873635.	IBA	Function
GO:0051260	protein homooligomerization	-	ISO	Process
GO:0051642	centrosome localization	19540120.	IMP	Process
GO:1990090	cellular response to nerve growth factor stimulus	-	ISO	Process