EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000035851 (Gene tree)
Gene ID: 231386
Gene Symbol: Ythdc1
Alias: A730098D12Rik
Full Name: YTH domain containing 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 32439 bases
Position: chr5:86804221-86836659
Accession: 2443713
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000113000	YTH	PF04146.15	2.3e-39	1	1
ENSMUSP00000113951	YTH	PF04146.15	2.4e-39	1	1
ENSMUSP00000039133	YTH	PF04146.15	2.5e-39	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000120498	-	3269	XM_006534864	ENSMUSP00000113951	728 (aa)	XP_017176331	E9Q5K9
ENSMUST00000119339	-	3222	XM_006534865	ENSMUSP00000113000	710 (aa)	XP_006534928	E9Q5K9
ENSMUST00000124123	-	593	-	-	- (aa)	-	-
ENSMUST00000151489	-	6313	-	-	- (aa)	-	-
ENSMUST00000198167	-	3335	-	-	- (aa)	-	-
ENSMUST00000156363	-	4346	-	ENSMUSP00000122491	545 (aa)	-	D6RG95
ENSMUST00000038384	-	2960	XM_006534863	ENSMUSP00000039133	736 (aa)	XP_006534926	E9Q5K9
ENSMUST00000123625	-	1246	-	-	- (aa)	-	-
ENSMUST00000148142	-	4006	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000035851's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000035851's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000035851	Ythdc1	100	96.879	ENSG00000083896	YTHDC1	100	96.879	Homo_sapiens
ENSMUSG00000035851	Ythdc1	57	59.518	ENSAPOG00000013997	ythdc1	59	61.009	Acanthochromis_polyacanthus
ENSMUSG00000035851	Ythdc1	93	92.899	ENSAMEG00000005688	YTHDC1	93	93.639	Ailuropoda_melanoleuca
ENSMUSG00000035851	Ythdc1	64	70.213	ENSACIG00000019728	ythdc1	82	59.112	Amphilophus_citrinellus
ENSMUSG00000035851	Ythdc1	57	61.239	ENSAOCG00000000239	ythdc1	94	55.021	Amphiprion_ocellaris
ENSMUSG00000035851	Ythdc1	50	64.151	ENSAPEG00000000618	ythdc1	55	67.308	Amphiprion_percula
ENSMUSG00000035851	Ythdc1	91	84.361	ENSAPLG00000009921	YTHDC1	92	85.414	Anas_platyrhynchos
ENSMUSG00000035851	Ythdc1	93	83.407	ENSACAG00000009697	YTHDC1	93	83.407	Anolis_carolinensis
ENSMUSG00000035851	Ythdc1	100	96.708	ENSANAG00000001522	YTHDC1	100	96.708	Aotus_nancymaae
ENSMUSG00000035851	Ythdc1	93	52.703	ENSACLG00000019371	ythdc1	94	55.337	Astatotilapia_calliptera
ENSMUSG00000035851	Ythdc1	93	63.112	ENSAMXG00000006978	ythdc1	92	64.740	Astyanax_mexicanus
ENSMUSG00000035851	Ythdc1	93	93.037	ENSBTAG00000015572	YTHDC1	93	93.185	Bos_taurus
ENSMUSG00000035851	Ythdc1	100	97.119	ENSCJAG00000009934	YTHDC1	100	97.119	Callithrix_jacchus
ENSMUSG00000035851	Ythdc1	93	92.751	ENSCAFG00000002821	YTHDC1	93	93.491	Canis_familiaris
ENSMUSG00000035851	Ythdc1	93	92.751	ENSCAFG00020027112	YTHDC1	93	93.491	Canis_lupus_dingo
ENSMUSG00000035851	Ythdc1	97	88.440	ENSCHIG00000004810	YTHDC1	95	92.789	Capra_hircus
ENSMUSG00000035851	Ythdc1	100	96.982	ENSTSYG00000011668	YTHDC1	100	96.982	Carlito_syrichta
ENSMUSG00000035851	Ythdc1	95	73.888	ENSCAPG00000008722	YTHDC1	90	68.148	Cavia_aperea
ENSMUSG00000035851	Ythdc1	97	90.755	ENSCPOG00000010929	YTHDC1	92	89.185	Cavia_porcellus
ENSMUSG00000035851	Ythdc1	100	96.982	ENSCCAG00000035754	YTHDC1	100	96.982	Cebus_capucinus
ENSMUSG00000035851	Ythdc1	100	97.015	ENSCATG00000036320	YTHDC1	100	97.015	Cercocebus_atys
ENSMUSG00000035851	Ythdc1	99	96.561	ENSCLAG00000005482	YTHDC1	99	96.561	Chinchilla_lanigera
ENSMUSG00000035851	Ythdc1	100	96.982	ENSCSAG00000005252	YTHDC1	100	96.982	Chlorocebus_sabaeus
ENSMUSG00000035851	Ythdc1	92	85.863	ENSCPBG00000021965	YTHDC1	94	86.749	Chrysemys_picta_bellii
ENSMUSG00000035851	Ythdc1	100	97.119	ENSCANG00000004769	YTHDC1	100	97.119	Colobus_angolensis_palliatus
ENSMUSG00000035851	Ythdc1	100	97.965	ENSCGRG00001000816	Ythdc1	100	97.965	Cricetulus_griseus_chok1gshd
ENSMUSG00000035851	Ythdc1	99	97.917	ENSCGRG00000009807	Ythdc1	99	97.917	Cricetulus_griseus_crigri
ENSMUSG00000035851	Ythdc1	57	60.132	ENSCSEG00000020404	ythdc1	94	53.380	Cynoglossus_semilaevis
ENSMUSG00000035851	Ythdc1	57	59.202	ENSCVAG00000022349	ythdc1	94	54.119	Cyprinodon_variegatus
ENSMUSG00000035851	Ythdc1	93	62.536	ENSDARG00000051953	ythdc1	92	62.952	Danio_rerio
ENSMUSG00000035851	Ythdc1	93	92.751	ENSDNOG00000004949	YTHDC1	93	94.083	Dasypus_novemcinctus
ENSMUSG00000035851	Ythdc1	99	96.836	ENSDORG00000013045	Ythdc1	100	96.801	Dipodomys_ordii
ENSMUSG00000035851	Ythdc1	71	100.000	ENSETEG00000001878	YTHDC1	70	100.000	Echinops_telfairi
ENSMUSG00000035851	Ythdc1	93	93.491	ENSEASG00005018383	YTHDC1	93	94.231	Equus_asinus_asinus
ENSMUSG00000035851	Ythdc1	93	92.899	ENSECAG00000018303	YTHDC1	99	92.737	Equus_caballus
ENSMUSG00000035851	Ythdc1	93	92.296	ENSEEUG00000015466	YTHDC1	93	92.593	Erinaceus_europaeus
ENSMUSG00000035851	Ythdc1	96	58.505	ENSELUG00000014029	ythdc1	95	62.538	Esox_lucius
ENSMUSG00000035851	Ythdc1	97	90.755	ENSFCAG00000026791	YTHDC1	93	93.926	Felis_catus
ENSMUSG00000035851	Ythdc1	62	96.939	ENSFALG00000006581	YTHDC1	87	93.431	Ficedula_albicollis
ENSMUSG00000035851	Ythdc1	99	95.828	ENSFDAG00000018560	YTHDC1	100	95.828	Fukomys_damarensis
ENSMUSG00000035851	Ythdc1	66	60.317	ENSFHEG00000001286	ythdc1	60	56.325	Fundulus_heteroclitus
ENSMUSG00000035851	Ythdc1	59	66.946	ENSGMOG00000018815	ythdc1	77	64.706	Gadus_morhua
ENSMUSG00000035851	Ythdc1	92	85.097	ENSGALG00000035906	YTHDC1	85	86.015	Gallus_gallus
ENSMUSG00000035851	Ythdc1	68	64.662	ENSGAFG00000001759	ythdc1	56	66.084	Gambusia_affinis
ENSMUSG00000035851	Ythdc1	57	62.150	ENSGACG00000015486	ythdc1	58	62.260	Gasterosteus_aculeatus
ENSMUSG00000035851	Ythdc1	93	85.505	ENSGAGG00000007108	YTHDC1	93	85.652	Gopherus_agassizii
ENSMUSG00000035851	Ythdc1	100	97.015	ENSGGOG00000021958	YTHDC1	100	97.015	Gorilla_gorilla
ENSMUSG00000035851	Ythdc1	93	52.896	ENSHBUG00000019288	ythdc1	93	55.337	Haplochromis_burtoni
ENSMUSG00000035851	Ythdc1	100	95.794	ENSHGLG00000006319	-	100	95.794	Heterocephalus_glaber_female
ENSMUSG00000035851	Ythdc1	94	69.534	ENSHGLG00000003239	-	86	72.090	Heterocephalus_glaber_female
ENSMUSG00000035851	Ythdc1	99	94.918	ENSHGLG00100001556	-	100	94.918	Heterocephalus_glaber_male
ENSMUSG00000035851	Ythdc1	94	68.070	ENSHGLG00100008060	-	86	70.579	Heterocephalus_glaber_male
ENSMUSG00000035851	Ythdc1	54	70.213	ENSHCOG00000001520	ythdc1	84	70.213	Hippocampus_comes
ENSMUSG00000035851	Ythdc1	93	67.054	ENSIPUG00000018136	ythdc1	92	66.860	Ictalurus_punctatus
ENSMUSG00000035851	Ythdc1	100	97.015	ENSSTOG00000013652	YTHDC1	100	97.015	Ictidomys_tridecemlineatus
ENSMUSG00000035851	Ythdc1	93	89.546	ENSJJAG00000010268	Ythdc1	93	92.273	Jaculus_jaculus
ENSMUSG00000035851	Ythdc1	57	60.502	ENSKMAG00000006483	ythdc1	87	64.889	Kryptolebias_marmoratus
ENSMUSG00000035851	Ythdc1	64	63.462	ENSLBEG00000020831	ythdc1	74	75.000	Labrus_bergylta
ENSMUSG00000035851	Ythdc1	87	72.300	ENSLACG00000004893	YTHDC1	92	72.855	Latimeria_chalumnae
ENSMUSG00000035851	Ythdc1	93	72.117	ENSLOCG00000003045	ythdc1	92	67.947	Lepisosteus_oculatus
ENSMUSG00000035851	Ythdc1	100	95.251	ENSLAFG00000021592	YTHDC1	100	95.251	Loxodonta_africana
ENSMUSG00000035851	Ythdc1	100	97.151	ENSMFAG00000031927	YTHDC1	100	97.151	Macaca_fascicularis
ENSMUSG00000035851	Ythdc1	100	97.119	ENSMMUG00000002265	YTHDC1	100	97.119	Macaca_mulatta
ENSMUSG00000035851	Ythdc1	100	97.119	ENSMNEG00000033751	YTHDC1	100	97.119	Macaca_nemestrina
ENSMUSG00000035851	Ythdc1	100	96.982	ENSMLEG00000042147	YTHDC1	100	96.982	Mandrillus_leucophaeus
ENSMUSG00000035851	Ythdc1	55	61.631	ENSMAMG00000013122	ythdc1	60	65.057	Mastacembelus_armatus
ENSMUSG00000035851	Ythdc1	93	52.703	ENSMZEG00005023173	ythdc1	93	55.337	Maylandia_zebra
ENSMUSG00000035851	Ythdc1	93	84.148	ENSMGAG00000010391	YTHDC1	92	86.222	Meleagris_gallopavo
ENSMUSG00000035851	Ythdc1	100	97.693	ENSMAUG00000001286	Ythdc1	100	97.693	Mesocricetus_auratus
ENSMUSG00000035851	Ythdc1	100	96.879	ENSMICG00000034640	YTHDC1	100	96.879	Microcebus_murinus
ENSMUSG00000035851	Ythdc1	100	97.693	ENSMOCG00000020201	Ythdc1	100	97.693	Microtus_ochrogaster
ENSMUSG00000035851	Ythdc1	96	51.064	ENSMODG00000010076	-	96	51.704	Monodelphis_domestica
ENSMUSG00000035851	Ythdc1	93	87.685	ENSMODG00000020754	-	92	88.296	Monodelphis_domestica
ENSMUSG00000035851	Ythdc1	65	56.695	ENSMODG00000009173	-	88	61.353	Monodelphis_domestica
ENSMUSG00000035851	Ythdc1	84	73.507	ENSMODG00000014337	-	95	69.830	Monodelphis_domestica
ENSMUSG00000035851	Ythdc1	50	67.116	ENSMALG00000013412	ythdc1	94	53.666	Monopterus_albus
ENSMUSG00000035851	Ythdc1	100	99.633	MGP_CAROLIEiJ_G0027347	Ythdc1	100	99.633	Mus_caroli
ENSMUSG00000035851	Ythdc1	100	99.321	MGP_PahariEiJ_G0017126	Ythdc1	100	99.321	Mus_pahari
ENSMUSG00000035851	Ythdc1	100	99.817	MGP_SPRETEiJ_G0028339	Ythdc1	100	99.817	Mus_spretus
ENSMUSG00000035851	Ythdc1	93	72.754	ENSMPUG00000001743	YTHDC1	53	97.911	Mustela_putorius_furo
ENSMUSG00000035851	Ythdc1	91	93.383	ENSMLUG00000016300	YTHDC1	92	92.632	Myotis_lucifugus
ENSMUSG00000035851	Ythdc1	77	90.758	ENSNGAG00000024000	Ythdc1	93	94.799	Nannospalax_galili
ENSMUSG00000035851	Ythdc1	60	61.631	ENSNBRG00000007663	ythdc1	73	65.011	Neolamprologus_brichardi
ENSMUSG00000035851	Ythdc1	99	96.154	ENSNLEG00000009202	YTHDC1	99	96.154	Nomascus_leucogenys
ENSMUSG00000035851	Ythdc1	82	81.605	ENSMEUG00000007128	YTHDC1	81	81.605	Notamacropus_eugenii
ENSMUSG00000035851	Ythdc1	75	97.734	ENSOPRG00000008986	YTHDC1	74	97.734	Ochotona_princeps
ENSMUSG00000035851	Ythdc1	97	90.000	ENSODEG00000001715	YTHDC1	93	93.630	Octodon_degus
ENSMUSG00000035851	Ythdc1	93	53.089	ENSONIG00000012651	ythdc1	94	55.618	Oreochromis_niloticus
ENSMUSG00000035851	Ythdc1	88	76.911	ENSOANG00000014398	YTHDC1	55	96.962	Ornithorhynchus_anatinus
ENSMUSG00000035851	Ythdc1	93	81.388	ENSOCUG00000015886	YTHDC1	58	93.812	Oryctolagus_cuniculus
ENSMUSG00000035851	Ythdc1	56	60.628	ENSORLG00000030544	ythdc1	62	65.421	Oryzias_latipes
ENSMUSG00000035851	Ythdc1	56	59.903	ENSORLG00020019316	ythdc1	62	65.421	Oryzias_latipes_hni
ENSMUSG00000035851	Ythdc1	56	61.029	ENSOMEG00000000551	ythdc1	94	53.858	Oryzias_melastigma
ENSMUSG00000035851	Ythdc1	100	96.159	ENSOGAG00000003362	YTHDC1	100	96.159	Otolemur_garnettii
ENSMUSG00000035851	Ythdc1	93	93.037	ENSOARG00000008633	YTHDC1	93	93.185	Ovis_aries
ENSMUSG00000035851	Ythdc1	100	96.879	ENSPPAG00000041315	YTHDC1	100	96.879	Pan_paniscus
ENSMUSG00000035851	Ythdc1	97	90.566	ENSPPRG00000011979	YTHDC1	93	93.851	Panthera_pardus
ENSMUSG00000035851	Ythdc1	93	92.126	ENSPTIG00000015527	YTHDC1	93	93.462	Panthera_tigris_altaica
ENSMUSG00000035851	Ythdc1	100	96.879	ENSPTRG00000016105	YTHDC1	100	96.879	Pan_troglodytes
ENSMUSG00000035851	Ythdc1	100	97.015	ENSPANG00000021590	YTHDC1	100	97.015	Papio_anubis
ENSMUSG00000035851	Ythdc1	93	68.268	ENSPKIG00000018497	ythdc1	93	68.070	Paramormyrops_kingsleyae
ENSMUSG00000035851	Ythdc1	91	85.586	ENSPSIG00000002782	YTHDC1	92	85.736	Pelodiscus_sinensis
ENSMUSG00000035851	Ythdc1	55	56.364	ENSPMGG00000000970	-	74	63.087	Periophthalmus_magnuspinnatus
ENSMUSG00000035851	Ythdc1	99	98.192	ENSPEMG00000013850	Ythdc1	100	98.192	Peromyscus_maniculatus_bairdii
ENSMUSG00000035851	Ythdc1	93	87.537	ENSPCIG00000006870	YTHDC1	92	88.148	Phascolarctos_cinereus
ENSMUSG00000035851	Ythdc1	57	59.318	ENSPLAG00000011079	ythdc1	87	64.789	Poecilia_latipinna
ENSMUSG00000035851	Ythdc1	70	58.894	ENSPREG00000016973	ythdc1	61	59.314	Poecilia_reticulata
ENSMUSG00000035851	Ythdc1	87	96.840	ENSPPYG00000014726	YTHDC1	100	96.840	Pongo_abelii
ENSMUSG00000035851	Ythdc1	77	98.810	ENSPCAG00000009607	YTHDC1	77	88.182	Procavia_capensis
ENSMUSG00000035851	Ythdc1	97	87.358	ENSPCOG00000019105	YTHDC1	92	90.776	Propithecus_coquereli
ENSMUSG00000035851	Ythdc1	93	91.137	ENSPVAG00000015551	YTHDC1	93	91.581	Pteropus_vampyrus
ENSMUSG00000035851	Ythdc1	93	52.703	ENSPNYG00000011687	ythdc1	94	55.337	Pundamilia_nyererei
ENSMUSG00000035851	Ythdc1	93	68.551	ENSPNAG00000028365	ythdc1	93	68.786	Pygocentrus_nattereri
ENSMUSG00000035851	Ythdc1	100	98.103	ENSRNOG00000001996	Ythdc1	100	98.103	Rattus_norvegicus
ENSMUSG00000035851	Ythdc1	99	94.780	ENSRBIG00000028279	YTHDC1	99	94.780	Rhinopithecus_bieti
ENSMUSG00000035851	Ythdc1	100	97.119	ENSRROG00000035028	YTHDC1	100	97.119	Rhinopithecus_roxellana
ENSMUSG00000035851	Ythdc1	100	97.151	ENSSBOG00000022353	YTHDC1	100	97.151	Saimiri_boliviensis_boliviensis
ENSMUSG00000035851	Ythdc1	93	86.499	ENSSHAG00000002538	YTHDC1	91	88.138	Sarcophilus_harrisii
ENSMUSG00000035851	Ythdc1	93	68.017	ENSSFOG00015003298	ythdc1	93	67.391	Scleropages_formosus
ENSMUSG00000035851	Ythdc1	56	60.090	ENSSMAG00000009086	ythdc1	94	53.944	Scophthalmus_maximus
ENSMUSG00000035851	Ythdc1	55	60.775	ENSSDUG00000022008	ythdc1	94	57.001	Seriola_dumerili
ENSMUSG00000035851	Ythdc1	55	60.775	ENSSLDG00000007926	ythdc1	94	56.662	Seriola_lalandi_dorsalis
ENSMUSG00000035851	Ythdc1	72	93.117	ENSSARG00000010960	YTHDC1	91	94.073	Sorex_araneus
ENSMUSG00000035851	Ythdc1	93	81.858	ENSSPUG00000009357	YTHDC1	94	83.079	Sphenodon_punctatus
ENSMUSG00000035851	Ythdc1	57	62.156	ENSSPAG00000011449	ythdc1	94	54.951	Stegastes_partitus
ENSMUSG00000035851	Ythdc1	97	89.493	ENSSSCG00000035505	YTHDC1	93	93.878	Sus_scrofa
ENSMUSG00000035851	Ythdc1	93	85.185	ENSTGUG00000004452	-	92	85.630	Taeniopygia_guttata
ENSMUSG00000035851	Ythdc1	64	61.224	ENSTRUG00000010142	ythdc1	72	70.000	Takifugu_rubripes
ENSMUSG00000035851	Ythdc1	91	61.513	ENSTNIG00000013243	ythdc1	89	65.581	Tetraodon_nigroviridis
ENSMUSG00000035851	Ythdc1	93	85.481	ENSTBEG00000011546	YTHDC1	92	87.111	Tupaia_belangeri
ENSMUSG00000035851	Ythdc1	93	92.160	ENSTTRG00000005083	YTHDC1	93	92.899	Tursiops_truncatus
ENSMUSG00000035851	Ythdc1	86	93.429	ENSUAMG00000010388	YTHDC1	92	93.429	Ursus_americanus
ENSMUSG00000035851	Ythdc1	99	82.361	ENSUMAG00000013668	YTHDC1	98	82.361	Ursus_maritimus
ENSMUSG00000035851	Ythdc1	97	90.755	ENSVPAG00000009040	YTHDC1	92	93.151	Vicugna_pacos
ENSMUSG00000035851	Ythdc1	91	92.889	ENSVVUG00000005387	YTHDC1	92	93.280	Vulpes_vulpes
ENSMUSG00000035851	Ythdc1	92	74.294	ENSXETG00000017960	ythdc1	91	73.855	Xenopus_tropicalis
ENSMUSG00000035851	Ythdc1	69	52.899	ENSXCOG00000000530	ythdc1	94	53.497	Xiphophorus_couchianus
ENSMUSG00000035851	Ythdc1	56	58.933	ENSXMAG00000005196	ythdc1	62	64.350	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0003723	RNA binding	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006376	mRNA splice site selection	-	ISO	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0006406	mRNA export from nucleus	-	ISO	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0009048	dosage compensation by inactivation of X chromosome	-	ISO	Process
GO:0010608	posttranscriptional regulation of gene expression	29262316.	IMP	Process
GO:0016604	nuclear body	-	ISO	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0048024	regulation of mRNA splicing, via spliceosome	-	ISO	Process
GO:1990247	N6-methyladenosine-containing RNA binding	-	ISO	Function