EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000035958 (Gene tree)
Gene ID: 56196
Gene Symbol: Tdp2
Alias: D13Ertd656e|Ttrap
Full Name: tyrosyl-DNA phosphodiesterase 2
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 10475 bases
Position: chr13:24831679-24842153
Accession: 1860486
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000035660	Exo_endo_phos	PF03372.23	1.2e-06	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000224542	-	625	-	-	- (aa)	-	-
ENSMUST00000226055	-	510	-	-	- (aa)	-	-
ENSMUST00000225490	-	1771	-	-	- (aa)	-	-
ENSMUST00000225138	-	1421	-	ENSMUSP00000153301	94 (aa)	-	A0A286YDM0
ENSMUST00000130788	-	543	-	-	- (aa)	-	-
ENSMUST00000038039	-	1957	-	ENSMUSP00000035660	370 (aa)	-	Q9JJX7
ENSMUST00000223804	-	1136	-	ENSMUSP00000153306	94 (aa)	-	A0A286YDM0

Gene Model

Click here to download ENSMUSG00000035958's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000035958's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000035958	Tdp2	91	68.915	ENSG00000111802	TDP2	91	75.180	Homo_sapiens
ENSMUSG00000035958	Tdp2	67	54.724	ENSAPOG00000018379	-	89	54.724	Acanthochromis_polyacanthus
ENSMUSG00000035958	Tdp2	75	75.357	ENSAMEG00000010230	TDP2	100	75.357	Ailuropoda_melanoleuca
ENSMUSG00000035958	Tdp2	70	53.409	ENSAPEG00000004208	-	94	53.409	Amphiprion_percula
ENSMUSG00000035958	Tdp2	68	52.140	ENSATEG00000010663	-	83	52.140	Anabas_testudineus
ENSMUSG00000035958	Tdp2	91	61.243	ENSACAG00000002332	TDP2	92	61.357	Anolis_carolinensis
ENSMUSG00000035958	Tdp2	91	69.795	ENSANAG00000020033	TDP2	94	69.795	Aotus_nancymaae
ENSMUSG00000035958	Tdp2	66	57.085	ENSACLG00000016148	tdp2b	87	57.085	Astatotilapia_calliptera
ENSMUSG00000035958	Tdp2	75	49.315	ENSACLG00000016132	tdp2b	98	49.315	Astatotilapia_calliptera
ENSMUSG00000035958	Tdp2	73	49.650	ENSACLG00000016174	tdp2b	89	52.652	Astatotilapia_calliptera
ENSMUSG00000035958	Tdp2	92	48.518	ENSAMXG00000011775	tdp2b	98	47.568	Astyanax_mexicanus
ENSMUSG00000035958	Tdp2	68	51.953	ENSAMXG00000036549	tdp2a	83	51.953	Astyanax_mexicanus
ENSMUSG00000035958	Tdp2	91	67.930	ENSBTAG00000000365	TDP2	94	67.930	Bos_taurus
ENSMUSG00000035958	Tdp2	88	32.523	WBGene00013405	tdpt-1	85	32.831	Caenorhabditis_elegans
ENSMUSG00000035958	Tdp2	94	67.622	ENSCJAG00000006074	TDP2	91	74.460	Callithrix_jacchus
ENSMUSG00000035958	Tdp2	96	66.852	ENSCJAG00000021963	-	94	68.328	Callithrix_jacchus
ENSMUSG00000035958	Tdp2	91	69.118	ENSCAFG00000010428	TDP2	96	76.071	Canis_familiaris
ENSMUSG00000035958	Tdp2	75	76.071	ENSCAFG00020009994	TDP2	96	76.071	Canis_lupus_dingo
ENSMUSG00000035958	Tdp2	78	73.220	ENSCHIG00000015294	-	95	75.532	Capra_hircus
ENSMUSG00000035958	Tdp2	82	69.156	ENSTSYG00000037199	TDP2	99	69.481	Carlito_syrichta
ENSMUSG00000035958	Tdp2	91	69.706	ENSCPOG00000006390	TDP2	95	69.501	Cavia_porcellus
ENSMUSG00000035958	Tdp2	94	68.768	ENSCCAG00000022734	TDP2	91	75.540	Cebus_capucinus
ENSMUSG00000035958	Tdp2	91	69.795	ENSCATG00000022076	TDP2	91	76.259	Cercocebus_atys
ENSMUSG00000035958	Tdp2	95	65.928	ENSCLAG00000002072	TDP2	95	67.723	Chinchilla_lanigera
ENSMUSG00000035958	Tdp2	94	68.768	ENSCSAG00000007769	TDP2	95	69.795	Chlorocebus_sabaeus
ENSMUSG00000035958	Tdp2	91	59.882	ENSCPBG00000006551	TDP2	87	59.706	Chrysemys_picta_bellii
ENSMUSG00000035958	Tdp2	91	69.501	ENSCANG00000040122	TDP2	92	75.899	Colobus_angolensis_palliatus
ENSMUSG00000035958	Tdp2	100	84.595	ENSCGRG00001000384	Tdp2	100	84.595	Cricetulus_griseus_chok1gshd
ENSMUSG00000035958	Tdp2	92	81.525	ENSCGRG00000010250	Tdp2	94	82.353	Cricetulus_griseus_crigri
ENSMUSG00000035958	Tdp2	91	48.864	ENSCVAG00000003114	tdp2b	96	48.864	Cyprinodon_variegatus
ENSMUSG00000035958	Tdp2	90	47.802	ENSDARG00000035954	tdp2b	95	47.802	Danio_rerio
ENSMUSG00000035958	Tdp2	66	49.194	ENSDARG00000069941	tdp2a	55	49.194	Danio_rerio
ENSMUSG00000035958	Tdp2	96	66.111	ENSDNOG00000044082	TDP2	93	67.544	Dasypus_novemcinctus
ENSMUSG00000035958	Tdp2	74	73.741	ENSETEG00000019096	TDP2	100	73.741	Echinops_telfairi
ENSMUSG00000035958	Tdp2	70	52.852	ENSEBUG00000006535	tdp2a	61	52.852	Eptatretus_burgeri
ENSMUSG00000035958	Tdp2	91	68.328	ENSEASG00005007656	TDP2	94	68.129	Equus_asinus_asinus
ENSMUSG00000035958	Tdp2	91	68.035	ENSECAG00000014264	TDP2	94	67.836	Equus_caballus
ENSMUSG00000035958	Tdp2	91	67.059	ENSEEUG00000010776	TDP2	94	67.059	Erinaceus_europaeus
ENSMUSG00000035958	Tdp2	67	49.799	ENSELUG00000009321	tdp2a	77	48.996	Esox_lucius
ENSMUSG00000035958	Tdp2	90	50.000	ENSELUG00000016449	tdp2b	95	50.000	Esox_lucius
ENSMUSG00000035958	Tdp2	96	65.833	ENSFCAG00000025612	TDP2	99	65.833	Felis_catus
ENSMUSG00000035958	Tdp2	91	55.294	ENSFALG00000004710	TDP2	94	55.425	Ficedula_albicollis
ENSMUSG00000035958	Tdp2	74	74.820	ENSFDAG00000006512	TDP2	96	74.820	Fukomys_damarensis
ENSMUSG00000035958	Tdp2	72	49.084	ENSFHEG00000013560	-	92	49.084	Fundulus_heteroclitus
ENSMUSG00000035958	Tdp2	98	57.692	ENSGALG00000013637	TDP2	98	57.724	Gallus_gallus
ENSMUSG00000035958	Tdp2	91	59.882	ENSGAGG00000002853	TDP2	87	59.706	Gopherus_agassizii
ENSMUSG00000035958	Tdp2	91	68.622	ENSGGOG00000014237	TDP2	91	74.820	Gorilla_gorilla
ENSMUSG00000035958	Tdp2	55	55.924	ENSHBUG00000005421	-	88	55.924	Haplochromis_burtoni
ENSMUSG00000035958	Tdp2	99	50.000	ENSHBUG00000002714	tdp2b	95	52.137	Haplochromis_burtoni
ENSMUSG00000035958	Tdp2	94	66.857	ENSHGLG00000008655	TDP2	95	67.353	Heterocephalus_glaber_female
ENSMUSG00000035958	Tdp2	94	66.857	ENSHGLG00100019087	TDP2	95	67.353	Heterocephalus_glaber_male
ENSMUSG00000035958	Tdp2	90	50.282	ENSIPUG00000013691	tdp2b	94	50.282	Ictalurus_punctatus
ENSMUSG00000035958	Tdp2	94	69.075	ENSJJAG00000021685	Tdp2	98	69.412	Jaculus_jaculus
ENSMUSG00000035958	Tdp2	68	51.938	ENSKMAG00000015485	-	83	51.938	Kryptolebias_marmoratus
ENSMUSG00000035958	Tdp2	91	55.043	ENSLACG00000008852	TDP2	95	55.043	Latimeria_chalumnae
ENSMUSG00000035958	Tdp2	74	58.545	ENSLOCG00000005817	tdp2b	98	58.545	Lepisosteus_oculatus
ENSMUSG00000035958	Tdp2	91	69.501	ENSLAFG00000002567	TDP2	97	69.501	Loxodonta_africana
ENSMUSG00000035958	Tdp2	91	70.088	ENSMFAG00000045296	TDP2	91	76.619	Macaca_fascicularis
ENSMUSG00000035958	Tdp2	91	70.088	ENSMMUG00000009803	TDP2	95	70.088	Macaca_mulatta
ENSMUSG00000035958	Tdp2	91	70.088	ENSMNEG00000038003	TDP2	91	76.619	Macaca_nemestrina
ENSMUSG00000035958	Tdp2	91	69.795	ENSMLEG00000028883	TDP2	91	76.259	Mandrillus_leucophaeus
ENSMUSG00000035958	Tdp2	93	48.864	ENSMAMG00000013654	tdp2b	94	50.000	Mastacembelus_armatus
ENSMUSG00000035958	Tdp2	77	50.865	ENSMZEG00005004077	tdp2b	97	50.865	Maylandia_zebra
ENSMUSG00000035958	Tdp2	65	54.065	ENSMZEG00005004055	tdp2b	81	54.065	Maylandia_zebra
ENSMUSG00000035958	Tdp2	69	54.104	ENSMZEG00005004153	tdp2b	94	54.104	Maylandia_zebra
ENSMUSG00000035958	Tdp2	74	50.000	ENSMZEG00005004126	tdp2b	90	52.273	Maylandia_zebra
ENSMUSG00000035958	Tdp2	69	50.379	ENSMZEG00005004103	tdp2b	88	50.379	Maylandia_zebra
ENSMUSG00000035958	Tdp2	99	49.219	ENSMZEG00005003950	tdp2b	95	51.282	Maylandia_zebra
ENSMUSG00000035958	Tdp2	67	46.388	ENSMZEG00005003980	-	85	46.388	Maylandia_zebra
ENSMUSG00000035958	Tdp2	98	58.791	ENSMGAG00000008014	TDP2	98	58.791	Meleagris_gallopavo
ENSMUSG00000035958	Tdp2	100	84.865	ENSMAUG00000014451	Tdp2	100	85.135	Mesocricetus_auratus
ENSMUSG00000035958	Tdp2	94	68.182	ENSMICG00000000039	TDP2	94	74.820	Microcebus_murinus
ENSMUSG00000035958	Tdp2	100	83.784	ENSMOCG00000002823	Tdp2	100	83.784	Microtus_ochrogaster
ENSMUSG00000035958	Tdp2	83	59.494	ENSMODG00000011653	TDP2	94	60.065	Monodelphis_domestica
ENSMUSG00000035958	Tdp2	66	52.800	ENSMALG00000005368	-	84	52.800	Monopterus_albus
ENSMUSG00000035958	Tdp2	100	96.216	MGP_CAROLIEiJ_G0018354	Tdp2	100	96.216	Mus_caroli
ENSMUSG00000035958	Tdp2	100	92.703	MGP_PahariEiJ_G0019417	Tdp2	100	92.703	Mus_pahari
ENSMUSG00000035958	Tdp2	100	97.849	MGP_SPRETEiJ_G0019220	Tdp2	100	97.849	Mus_spretus
ENSMUSG00000035958	Tdp2	91	69.388	ENSMPUG00000004516	TDP2	95	69.388	Mustela_putorius_furo
ENSMUSG00000035958	Tdp2	94	63.068	ENSMLUG00000013506	TDP2	94	64.412	Myotis_lucifugus
ENSMUSG00000035958	Tdp2	99	73.784	ENSNGAG00000001375	Tdp2	99	73.514	Nannospalax_galili
ENSMUSG00000035958	Tdp2	92	69.767	ENSNLEG00000002447	TDP2	96	70.088	Nomascus_leucogenys
ENSMUSG00000035958	Tdp2	93	67.429	ENSOPRG00000016299	TDP2	97	68.513	Ochotona_princeps
ENSMUSG00000035958	Tdp2	74	76.259	ENSODEG00000014018	TDP2	95	76.259	Octodon_degus
ENSMUSG00000035958	Tdp2	91	67.930	ENSOCUG00000013773	TDP2	94	67.733	Oryctolagus_cuniculus
ENSMUSG00000035958	Tdp2	68	50.195	ENSORLG00000001661	-	94	50.195	Oryzias_latipes
ENSMUSG00000035958	Tdp2	68	50.195	ENSORLG00020004634	-	94	50.195	Oryzias_latipes_hni
ENSMUSG00000035958	Tdp2	68	45.736	ENSORLG00015008190	-	93	45.736	Oryzias_latipes_hsok
ENSMUSG00000035958	Tdp2	78	47.782	ENSOMEG00000015899	-	93	52.000	Oryzias_melastigma
ENSMUSG00000035958	Tdp2	97	65.289	ENSOGAG00000025303	TDP2	93	67.155	Otolemur_garnettii
ENSMUSG00000035958	Tdp2	91	68.915	ENSPPAG00000029023	TDP2	92	75.180	Pan_paniscus
ENSMUSG00000035958	Tdp2	96	65.556	ENSPPRG00000015398	TDP2	99	65.556	Panthera_pardus
ENSMUSG00000035958	Tdp2	74	75.180	ENSPTIG00000018574	TDP2	95	75.180	Panthera_tigris_altaica
ENSMUSG00000035958	Tdp2	91	68.915	ENSPTRG00000017778	TDP2	91	75.180	Pan_troglodytes
ENSMUSG00000035958	Tdp2	91	69.501	ENSPANG00000017590	TDP2	91	75.899	Papio_anubis
ENSMUSG00000035958	Tdp2	93	49.587	ENSPKIG00000006483	tdp2b	95	50.423	Paramormyrops_kingsleyae
ENSMUSG00000035958	Tdp2	78	62.373	ENSPSIG00000004948	TDP2	99	62.976	Pelodiscus_sinensis
ENSMUSG00000035958	Tdp2	100	86.486	ENSPEMG00000001788	Tdp2	100	86.486	Peromyscus_maniculatus_bairdii
ENSMUSG00000035958	Tdp2	67	46.442	ENSPMAG00000001570	tdp2b	97	46.442	Petromyzon_marinus
ENSMUSG00000035958	Tdp2	91	59.420	ENSPCIG00000007316	TDP2	89	59.420	Phascolarctos_cinereus
ENSMUSG00000035958	Tdp2	69	49.618	ENSPFOG00000017990	-	94	49.242	Poecilia_formosa
ENSMUSG00000035958	Tdp2	69	49.237	ENSPLAG00000019439	-	82	49.237	Poecilia_latipinna
ENSMUSG00000035958	Tdp2	66	51.200	ENSPMEG00000010824	-	84	51.200	Poecilia_mexicana
ENSMUSG00000035958	Tdp2	91	68.915	ENSPPYG00000016282	TDP2	87	68.915	Pongo_abelii
ENSMUSG00000035958	Tdp2	91	68.529	ENSPCOG00000021415	TDP2	98	74.552	Propithecus_coquereli
ENSMUSG00000035958	Tdp2	69	51.056	ENSPNYG00000011504	tdp2b	92	51.056	Pundamilia_nyererei
ENSMUSG00000035958	Tdp2	99	48.177	ENSPNYG00000011532	tdp2b	94	50.286	Pundamilia_nyererei
ENSMUSG00000035958	Tdp2	66	52.846	ENSPNAG00000022162	tdp2a	63	52.846	Pygocentrus_nattereri
ENSMUSG00000035958	Tdp2	100	86.757	ENSRNOG00000018246	Tdp2	100	87.297	Rattus_norvegicus
ENSMUSG00000035958	Tdp2	91	69.501	ENSRBIG00000037119	TDP2	92	75.899	Rhinopithecus_bieti
ENSMUSG00000035958	Tdp2	91	69.208	ENSRROG00000005025	TDP2	92	75.540	Rhinopithecus_roxellana
ENSMUSG00000035958	Tdp2	96	67.500	ENSSBOG00000028734	TDP2	91	75.899	Saimiri_boliviensis_boliviensis
ENSMUSG00000035958	Tdp2	99	58.021	ENSSHAG00000002506	TDP2	99	58.021	Sarcophilus_harrisii
ENSMUSG00000035958	Tdp2	76	50.397	ENSSFOG00015011322	-	73	50.397	Scleropages_formosus
ENSMUSG00000035958	Tdp2	74	70.968	ENSSARG00000013547	TDP2	100	70.968	Sorex_araneus
ENSMUSG00000035958	Tdp2	91	59.714	ENSSPUG00000008288	TDP2	95	59.714	Sphenodon_punctatus
ENSMUSG00000035958	Tdp2	91	68.622	ENSSSCG00000001092	TDP2	94	68.622	Sus_scrofa
ENSMUSG00000035958	Tdp2	68	64.961	ENSTGUG00000009035	TDP2	97	64.961	Taeniopygia_guttata
ENSMUSG00000035958	Tdp2	99	46.438	ENSTRUG00000014347	tdp2b	95	48.986	Takifugu_rubripes
ENSMUSG00000035958	Tdp2	75	49.823	ENSTRUG00000012218	-	95	49.648	Takifugu_rubripes
ENSMUSG00000035958	Tdp2	68	51.953	ENSTNIG00000010260	TDP2	97	51.953	Tetraodon_nigroviridis
ENSMUSG00000035958	Tdp2	96	46.237	ENSTNIG00000017792	tdp2b	96	47.472	Tetraodon_nigroviridis
ENSMUSG00000035958	Tdp2	91	68.328	ENSTTRG00000016376	TDP2	94	68.622	Tursiops_truncatus
ENSMUSG00000035958	Tdp2	94	66.952	ENSUAMG00000025939	TDP2	95	67.449	Ursus_americanus
ENSMUSG00000035958	Tdp2	75	75.357	ENSUMAG00000020111	TDP2	93	75.357	Ursus_maritimus
ENSMUSG00000035958	Tdp2	93	56.510	ENSXETG00000014826	tdp2	95	57.345	Xenopus_tropicalis
ENSMUSG00000035958	Tdp2	69	50.192	ENSXCOG00000010778	-	72	49.808	Xiphophorus_couchianus
ENSMUSG00000035958	Tdp2	69	50.385	ENSXMAG00000022252	-	75	50.579	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000287	magnesium ion binding	-	ISO	Function
GO:0003697	single-stranded DNA binding	21873635.	IBA	Function
GO:0003697	single-stranded DNA binding	-	ISO	Function
GO:0004518	nuclease activity	-	IEA	Function
GO:0004519	endonuclease activity	11478795.	ISA	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006302	double-strand break repair	21873635.	IBA	Process
GO:0006302	double-strand break repair	-	ISO	Process
GO:0006974	cellular response to DNA damage stimulus	-	IEA	Process
GO:0008081	phosphoric diester hydrolase activity	11478795.	ISA	Function
GO:0016235	aggresome	-	ISO	Component
GO:0016604	nuclear body	-	ISO	Component
GO:0016605	PML body	21873635.	IBA	Component
GO:0016605	PML body	-	ISO	Component
GO:0016787	hydrolase activity	-	IEA	Function
GO:0030145	manganese ion binding	-	ISO	Function
GO:0036317	tyrosyl-RNA phosphodiesterase activity	-	ISO	Function
GO:0046872	metal ion binding	-	IEA	Function
GO:0048666	neuron development	-	ISO	Process
GO:0070260	5'-tyrosyl-DNA phosphodiesterase activity	21873635.	IBA	Function
GO:0070260	5'-tyrosyl-DNA phosphodiesterase activity	-	ISO	Function