EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000035960 (Gene tree)
Gene ID
11792
Gene Symbol
Apex1
Alias
HAP1|Ref-1
Full Name
apurinic/apyrimidinic endonuclease 1
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Plus strand
Length
2172 bases
Position
chr14:50924968-50927139
Accession
88042
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000042602Exo_endo_phosPF03372.231.4e-2111
ENSMUSP00000116319Exo_endo_phosPF03372.233.1e-2011
ENSMUSP00000122343Exo_endo_phosPF03372.231.2e-1311
ENSMUSP00000123148Exo_endo_phosPF03372.232e-0711
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
27768875High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem CellsnIC & mESC2016.09He CDOI: 10.1016/j.molcel.2016.09.034
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000049411-1239-ENSMUSP00000042602317 (aa)-P28352
ENSMUST00000128395-1036-ENSMUSP00000116319289 (aa)-F6QA74
ENSMUST00000136753-655-ENSMUSP00000123148177 (aa)-D3Z124
ENSMUST00000154288-935-ENSMUSP00000122343214 (aa)-D3Z6R9
Gene Model
Click here to download ENSMUSG00000035960's gene model file
Pathways
Pathway IDPathway NameSource
mmu03410Base excision repairKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000035960's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000035960Apex110094.340ENSG00000100823APEX19997.987Homo_sapiens
ENSMUSG00000035960Apex18869.892ENSAPOG00000017002apex19965.397Acanthochromis_polyacanthus
ENSMUSG00000035960Apex110095.597ENSAMEG00000005418APEX110095.597Ailuropoda_melanoleuca
ENSMUSG00000035960Apex18871.223ENSACIG00000010653apex19770.588Amphilophus_citrinellus
ENSMUSG00000035960Apex18869.534ENSAOCG00000009649apex19965.300Amphiprion_ocellaris
ENSMUSG00000035960Apex18869.534ENSAPEG00000021453apex19965.300Amphiprion_percula
ENSMUSG00000035960Apex19967.516ENSATEG00000002883apex19767.516Anabas_testudineus
ENSMUSG00000035960Apex110070.093ENSACAG00000008099APEX110070.093Anolis_carolinensis
ENSMUSG00000035960Apex110095.597ENSANAG00000030117APEX110095.597Aotus_nancymaae
ENSMUSG00000035960Apex18771.739ENSACLG00000018441apex19967.302Astatotilapia_calliptera
ENSMUSG00000035960Apex110066.562ENSAMXG00000034699apex110066.562Astyanax_mexicanus
ENSMUSG00000035960Apex110093.396ENSBTAG00000002745APEX110093.396Bos_taurus
ENSMUSG00000035960Apex18044.922WBGene00001372exo-38844.922Caenorhabditis_elegans
ENSMUSG00000035960Apex110095.597ENSCJAG00000009726APEX110095.597Callithrix_jacchus
ENSMUSG00000035960Apex110095.597ENSCAFG00000032033APEX110095.597Canis_familiaris
ENSMUSG00000035960Apex19792.442ENSCAFG00020023002-9692.442Canis_lupus_dingo
ENSMUSG00000035960Apex110095.597ENSCAFG00020014377-10095.597Canis_lupus_dingo
ENSMUSG00000035960Apex110093.082ENSCHIG00000007298-10093.082Capra_hircus
ENSMUSG00000035960Apex19878.947ENSCHIG00000014537-9974.038Capra_hircus
ENSMUSG00000035960Apex110094.025ENSTSYG00000034813APEX110094.025Carlito_syrichta
ENSMUSG00000035960Apex18588.561ENSCAPG00000016235APEX19197.034Cavia_aperea
ENSMUSG00000035960Apex110093.711ENSCPOG00000030909APEX110093.711Cavia_porcellus
ENSMUSG00000035960Apex110081.761ENSCCAG00000031931-10081.761Cebus_capucinus
ENSMUSG00000035960Apex110095.597ENSCCAG00000033056-10095.597Cebus_capucinus
ENSMUSG00000035960Apex110094.340ENSCATG00000015580APEX110094.340Cercocebus_atys
ENSMUSG00000035960Apex110094.340ENSCLAG00000001002APEX110094.340Chinchilla_lanigera
ENSMUSG00000035960Apex110094.025ENSCSAG00000016685-10094.025Chlorocebus_sabaeus
ENSMUSG00000035960Apex110094.025ENSCSAG00000016670-10094.025Chlorocebus_sabaeus
ENSMUSG00000035960Apex110071.473ENSCPBG00000009567APEX110071.473Chrysemys_picta_bellii
ENSMUSG00000035960Apex19154.237ENSCING00000008137-9454.237Ciona_intestinalis
ENSMUSG00000035960Apex110047.634ENSCSAVG00000007144-10052.896Ciona_savignyi
ENSMUSG00000035960Apex110094.654ENSCANG00000030726APEX110094.654Colobus_angolensis_palliatus
ENSMUSG00000035960Apex110094.322ENSCGRG00001017046Apex110094.322Cricetulus_griseus_chok1gshd
ENSMUSG00000035960Apex110094.322ENSCGRG00000008984Apex110094.322Cricetulus_griseus_crigri
ENSMUSG00000035960Apex19964.984ENSCSEG00000017499apex19964.984Cynoglossus_semilaevis
ENSMUSG00000035960Apex19966.984ENSCVAG00000022075apex19966.984Cyprinodon_variegatus
ENSMUSG00000035960Apex110065.931ENSDARG00000045843apex110065.931Danio_rerio
ENSMUSG00000035960Apex110092.093ENSDNOG00000042234APEX19590.252Dasypus_novemcinctus
ENSMUSG00000035960Apex110093.711ENSDORG00000001616Apex110093.711Dipodomys_ordii
ENSMUSG00000035960Apex110093.396ENSETEG00000004855-10093.396Echinops_telfairi
ENSMUSG00000035960Apex17564.017ENSEBUG00000000622-9264.017Eptatretus_burgeri
ENSMUSG00000035960Apex110095.597ENSEASG00005017489APEX17495.597Equus_asinus_asinus
ENSMUSG00000035960Apex110095.597ENSECAG00000022325APEX18295.597Equus_caballus
ENSMUSG00000035960Apex19193.750ENSEEUG00000012569APEX110093.750Erinaceus_europaeus
ENSMUSG00000035960Apex110065.300ENSELUG00000021706apex110065.931Esox_lucius
ENSMUSG00000035960Apex110096.226ENSFCAG00000030869APEX110096.226Felis_catus
ENSMUSG00000035960Apex110094.025ENSFDAG00000006120APEX110094.025Fukomys_damarensis
ENSMUSG00000035960Apex19968.889ENSFHEG00000009031apex18368.889Fundulus_heteroclitus
ENSMUSG00000035960Apex19962.222ENSGMOG00000007943apex19962.222Gadus_morhua
ENSMUSG00000035960Apex19967.937ENSGAFG00000005311apex19967.937Gambusia_affinis
ENSMUSG00000035960Apex19966.246ENSGACG00000019497apex19969.549Gasterosteus_aculeatus
ENSMUSG00000035960Apex110070.846ENSGAGG00000014999APEX110070.846Gopherus_agassizii
ENSMUSG00000035960Apex110094.654ENSGGOG00000002128APEX110094.654Gorilla_gorilla
ENSMUSG00000035960Apex19966.667ENSHBUG00000005894apex19967.405Haplochromis_burtoni
ENSMUSG00000035960Apex110094.340ENSHGLG00000002848APEX110094.340Heterocephalus_glaber_female
ENSMUSG00000035960Apex110094.340ENSHGLG00100017878APEX110094.340Heterocephalus_glaber_male
ENSMUSG00000035960Apex19966.456ENSHCOG00000009961apex19966.456Hippocampus_comes
ENSMUSG00000035960Apex110068.025ENSIPUG00000005799apex110068.025Ictalurus_punctatus
ENSMUSG00000035960Apex110094.340ENSSTOG00000010096APEX110094.340Ictidomys_tridecemlineatus
ENSMUSG00000035960Apex110093.396ENSJJAG00000012067-10093.396Jaculus_jaculus
ENSMUSG00000035960Apex110083.962ENSJJAG00000003660-10083.962Jaculus_jaculus
ENSMUSG00000035960Apex19586.572ENSJJAG00000020465-9686.572Jaculus_jaculus
ENSMUSG00000035960Apex19966.984ENSKMAG00000021171apex19966.984Kryptolebias_marmoratus
ENSMUSG00000035960Apex19964.444ENSLBEG00000010248apex19964.444Labrus_bergylta
ENSMUSG00000035960Apex110066.562ENSLACG00000008617APEX110066.562Latimeria_chalumnae
ENSMUSG00000035960Apex110066.770ENSLOCG00000015516apex19966.770Lepisosteus_oculatus
ENSMUSG00000035960Apex110092.453ENSLAFG00000021872APEX110092.453Loxodonta_africana
ENSMUSG00000035960Apex110094.025ENSMFAG00000002565APEX110094.025Macaca_fascicularis
ENSMUSG00000035960Apex110094.025ENSMMUG00000048039APEX110094.025Macaca_mulatta
ENSMUSG00000035960Apex110094.025ENSMNEG00000036944APEX110094.025Macaca_nemestrina
ENSMUSG00000035960Apex110094.340ENSMLEG00000042125APEX110094.340Mandrillus_leucophaeus
ENSMUSG00000035960Apex19967.302ENSMAMG00000023526apex19967.302Mastacembelus_armatus
ENSMUSG00000035960Apex18771.739ENSMZEG00005014187apex19967.302Maylandia_zebra
ENSMUSG00000035960Apex110094.637ENSMAUG00000013994Apex110094.637Mesocricetus_auratus
ENSMUSG00000035960Apex110095.283ENSMICG00000043554APEX110095.283Microcebus_murinus
ENSMUSG00000035960Apex110095.584ENSMOCG00000013721Apex110095.584Microtus_ochrogaster
ENSMUSG00000035960Apex19963.950ENSMMOG00000010031apex19763.950Mola_mola
ENSMUSG00000035960Apex110084.375ENSMODG00000007125APEX110085.714Monodelphis_domestica
ENSMUSG00000035960Apex18864.158ENSMALG00000011699apex17963.140Monopterus_albus
ENSMUSG00000035960Apex110099.435MGP_CAROLIEiJ_G0019209Apex110099.435Mus_caroli
ENSMUSG00000035960Apex110099.065MGP_PahariEiJ_G0030232Apex110099.054Mus_pahari
ENSMUSG00000035960Apex1100100.000MGP_SPRETEiJ_G0020101Apex1100100.000Mus_spretus
ENSMUSG00000035960Apex110094.688ENSMLUG00000028957APEX110094.688Myotis_lucifugus
ENSMUSG00000035960Apex110094.969ENSNGAG00000002725-10094.969Nannospalax_galili
ENSMUSG00000035960Apex110075.349ENSNGAG00000021748-9971.384Nannospalax_galili
ENSMUSG00000035960Apex18771.377ENSNBRG00000005334apex19166.984Neolamprologus_brichardi
ENSMUSG00000035960Apex110094.969ENSNLEG00000010839APEX110094.969Nomascus_leucogenys
ENSMUSG00000035960Apex110085.804ENSMEUG00000014519APEX110085.804Notamacropus_eugenii
ENSMUSG00000035960Apex110093.082ENSOPRG00000014029APEX110093.082Ochotona_princeps
ENSMUSG00000035960Apex110094.654ENSODEG00000001703-10094.654Octodon_degus
ENSMUSG00000035960Apex110078.140ENSODEG00000004777-9976.052Octodon_degus
ENSMUSG00000035960Apex110070.988ENSODEG00000006583-10070.988Octodon_degus
ENSMUSG00000035960Apex18871.942ENSONIG00000012089apex19967.619Oreochromis_niloticus
ENSMUSG00000035960Apex19083.158ENSOANG00000008836APEX18079.012Ornithorhynchus_anatinus
ENSMUSG00000035960Apex110095.283ENSOCUG00000005022APEX110095.283Oryctolagus_cuniculus
ENSMUSG00000035960Apex19967.610ENSORLG00000012378apex19967.610Oryzias_latipes
ENSMUSG00000035960Apex19967.610ENSORLG00020021371apex19967.610Oryzias_latipes_hni
ENSMUSG00000035960Apex19967.610ENSORLG00015020089apex19967.610Oryzias_latipes_hsok
ENSMUSG00000035960Apex19967.302ENSOMEG00000018876apex19967.302Oryzias_melastigma
ENSMUSG00000035960Apex110094.025ENSOGAG00000013335-10094.025Otolemur_garnettii
ENSMUSG00000035960Apex110089.347ENSOGAG00000029355-10089.347Otolemur_garnettii
ENSMUSG00000035960Apex110086.977ENSOARG00000001876-10089.610Ovis_aries
ENSMUSG00000035960Apex19982.464ENSOARG00000014424-9978.662Ovis_aries
ENSMUSG00000035960Apex110092.138ENSOARG00000019740-10092.138Ovis_aries
ENSMUSG00000035960Apex110094.654ENSPPAG00000038760APEX110094.654Pan_paniscus
ENSMUSG00000035960Apex110096.541ENSPPRG00000011794APEX110096.541Panthera_pardus
ENSMUSG00000035960Apex110096.226ENSPTIG00000014829APEX110096.226Panthera_tigris_altaica
ENSMUSG00000035960Apex110094.654ENSPTRG00000006093APEX110094.654Pan_troglodytes
ENSMUSG00000035960Apex110094.340ENSPANG00000022757APEX110094.340Papio_anubis
ENSMUSG00000035960Apex18768.592ENSPKIG00000003504apex110064.815Paramormyrops_kingsleyae
ENSMUSG00000035960Apex17667.078ENSPMGG00000016596apex17367.078Periophthalmus_magnuspinnatus
ENSMUSG00000035960Apex110097.664ENSPEMG00000019097Apex110097.476Peromyscus_maniculatus_bairdii
ENSMUSG00000035960Apex19565.232ENSPMAG00000007275-10065.232Petromyzon_marinus
ENSMUSG00000035960Apex110084.013ENSPCIG00000023274APEX110085.981Phascolarctos_cinereus
ENSMUSG00000035960Apex19967.937ENSPFOG00000004178apex19967.937Poecilia_formosa
ENSMUSG00000035960Apex19967.619ENSPLAG00000012779apex19967.619Poecilia_latipinna
ENSMUSG00000035960Apex19967.937ENSPMEG00000019623apex19967.937Poecilia_mexicana
ENSMUSG00000035960Apex19967.302ENSPREG00000014298apex19967.302Poecilia_reticulata
ENSMUSG00000035960Apex110094.025ENSPPYG00000005565APEX110094.025Pongo_abelii
ENSMUSG00000035960Apex110091.195ENSPCAG00000010376APEX110091.195Procavia_capensis
ENSMUSG00000035960Apex110095.283ENSPCOG00000021564APEX110095.283Propithecus_coquereli
ENSMUSG00000035960Apex110094.062ENSPVAG00000010736APEX110094.062Pteropus_vampyrus
ENSMUSG00000035960Apex18771.739ENSPNYG00000023940apex19967.302Pundamilia_nyererei
ENSMUSG00000035960Apex110063.889ENSPNAG00000020897apex19665.763Pygocentrus_nattereri
ENSMUSG00000035960Apex110098.423ENSRNOG00000009663Apex110098.423Rattus_norvegicus
ENSMUSG00000035960Apex110094.340ENSRBIG00000038325APEX19994.340Rhinopithecus_bieti
ENSMUSG00000035960Apex110095.283ENSSBOG00000018921-10095.283Saimiri_boliviensis_boliviensis
ENSMUSG00000035960Apex110081.073ENSSBOG00000031372-10081.073Saimiri_boliviensis_boliviensis
ENSMUSG00000035960Apex110083.333ENSSHAG00000013524APEX110084.049Sarcophilus_harrisii
ENSMUSG00000035960Apex110063.407ENSSFOG00015001948apex110063.407Scleropages_formosus
ENSMUSG00000035960Apex19966.032ENSSMAG00000013348apex19966.032Scophthalmus_maximus
ENSMUSG00000035960Apex19966.667ENSSDUG00000016377apex19966.667Seriola_dumerili
ENSMUSG00000035960Apex19967.302ENSSLDG00000023005apex19967.302Seriola_lalandi_dorsalis
ENSMUSG00000035960Apex19968.354ENSSPUG00000000531APEX19968.354Sphenodon_punctatus
ENSMUSG00000035960Apex19965.714ENSSPAG00000000458apex19965.714Stegastes_partitus
ENSMUSG00000035960Apex110062.150ENSSSCG00000039705-10056.037Sus_scrofa
ENSMUSG00000035960Apex110095.597ENSSSCG00000040060-10095.597Sus_scrofa
ENSMUSG00000035960Apex17460.593ENSTGUG00000014378APEX110060.593Taeniopygia_guttata
ENSMUSG00000035960Apex18867.986ENSTRUG00000004268apex19564.062Takifugu_rubripes
ENSMUSG00000035960Apex19964.127ENSTNIG00000005778apex19964.127Tetraodon_nigroviridis
ENSMUSG00000035960Apex110090.881ENSTBEG00000006405APEX110090.881Tupaia_belangeri
ENSMUSG00000035960Apex17494.915ENSTTRG00000007860APEX110094.915Tursiops_truncatus
ENSMUSG00000035960Apex110095.283ENSUAMG00000010457APEX110095.283Ursus_americanus
ENSMUSG00000035960Apex110095.283ENSUMAG00000009178APEX110095.283Ursus_maritimus
ENSMUSG00000035960Apex17489.831ENSVPAG00000005083APEX110089.831Vicugna_pacos
ENSMUSG00000035960Apex110095.597ENSVVUG00000009010APEX110095.597Vulpes_vulpes
ENSMUSG00000035960Apex110066.250ENSXETG00000024773apex110066.250Xenopus_tropicalis
ENSMUSG00000035960Apex19968.571ENSXCOG00000015233apex19968.571Xiphophorus_couchianus
ENSMUSG00000035960Apex19968.571ENSXMAG00000006195apex19968.571Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000723telomere maintenance-ISOProcess
GO:0003677DNA binding-ISOFunction
GO:0003684damaged DNA binding-ISOFunction
GO:0003691double-stranded telomeric DNA binding-ISOFunction
GO:0003713transcription coactivator activity-ISOFunction
GO:0003723RNA binding-IEAFunction
GO:0003906DNA-(apurinic or apyrimidinic site) endonuclease activity21873635.IBAFunction
GO:0003906DNA-(apurinic or apyrimidinic site) endonuclease activity-ISOFunction
GO:0004518nuclease activity-IEAFunction
GO:0004519endonuclease activity-IEAFunction
GO:0004521endoribonuclease activity-ISOFunction
GO:0004527exonuclease activity-IEAFunction
GO:0004528phosphodiesterase I activity21873635.IBAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus14594818.IDAComponent
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005667transcription factor complex-ISOComponent
GO:0005730nucleolus-ISOComponent
GO:0005737cytoplasm14594818.IDAComponent
GO:0005737cytoplasm-ISOComponent
GO:0005739mitochondrion-ISOComponent
GO:0005783endoplasmic reticulum-IEAComponent
GO:0005813centrosome-ISOComponent
GO:0006281DNA repair-ISOProcess
GO:0006284base-excision repair21873635.IBAProcess
GO:0006284base-excision repair-ISOProcess
GO:0006310DNA recombination-IEAProcess
GO:0006974cellular response to DNA damage stimulus-IEAProcess
GO:0007568aging-ISOProcess
GO:0008081phosphoric diester hydrolase activity-ISOFunction
GO:0008309double-stranded DNA exodeoxyribonuclease activity-ISOFunction
GO:0008311double-stranded DNA 3'-5' exodeoxyribonuclease activity21873635.IBAFunction
GO:00084083'-5' exonuclease activity-ISOFunction
GO:0014912negative regulation of smooth muscle cell migration-ISOProcess
GO:0016491oxidoreductase activity-ISOFunction
GO:0016607nuclear speck-ISOComponent
GO:0016787hydrolase activity-IEAFunction
GO:0016829lyase activity-IEAFunction
GO:0016890site-specific endodeoxyribonuclease activity, specific for altered base-ISOFunction
GO:0031490chromatin DNA binding-ISOFunction
GO:0042981regulation of apoptotic process-ISOProcess
GO:0043488regulation of mRNA stability-ISOProcess
GO:0044877protein-containing complex binding-ISOFunction
GO:0045454cell redox homeostasis14594818.IDAProcess
GO:0046872metal ion binding-ISOFunction
GO:0048471perinuclear region of cytoplasm-ISOComponent
GO:0051059NF-kappaB binding-ISOFunction
GO:0070301cellular response to hydrogen peroxide-ISOProcess
GO:0080111DNA demethylation-ISOProcess
GO:0097698telomere maintenance via base-excision repair-ISOProcess
GO:1900087positive regulation of G1/S transition of mitotic cell cycle-ISOProcess

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