EuRBPDB

Description

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000175743	-	1219	-	ENSMUSP00000135439	373 (aa)	-	H3BKL5
ENSMUST00000175719	-	383	-	-	- (aa)	-	-
ENSMUST00000176796	-	3668	-	-	- (aa)	-	-
ENSMUST00000177463	-	840	-	ENSMUSP00000135310	199 (aa)	-	H3BKA1
ENSMUST00000176007	-	727	-	-	- (aa)	-	-
ENSMUST00000176351	-	646	-	ENSMUSP00000134926	98 (aa)	-	H3BJC1
ENSMUST00000176397	-	996	-	ENSMUSP00000135191	331 (aa)	-	H3BJZ9
ENSMUST00000175859	-	917	-	-	- (aa)	-	-
ENSMUST00000039784	-	1762	XM_006511923	ENSMUSP00000042351	424 (aa)	XP_006511986	Q921H8
ENSMUST00000176546	-	768	-	ENSMUSP00000134981	114 (aa)	-	H3BJG8

Gene Model

Pathways

Pathway ID	Pathway Name	Source
mmu00071	Fatty acid degradation	KEGG
mmu00280	Valine, leucine and isoleucine degradation	KEGG
mmu00592	alpha-Linolenic acid metabolism	KEGG
mmu01040	Biosynthesis of unsaturated fatty acids	KEGG
mmu01100	Metabolic pathways	KEGG
mmu01212	Fatty acid metabolism	KEGG
mmu03320	PPAR signaling pathway	KEGG
mmu04146	Peroxisome	KEGG

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000036138	Acaa1a	95	33.945	WBGene00015125	B0303.3	99	31.195	Caenorhabditis_elegans
ENSMUSG00000036138	Acaa1a	91	41.147	FBgn0035203	CG9149	99	41.147	Drosophila_melanogaster
ENSMUSG00000036138	Acaa1a	92	37.656	FBgn0040064	yip2	99	37.656	Drosophila_melanogaster
ENSMUSG00000036138	Acaa1a	94	40.000	FBgn0025352	Thiolase	94	34.368	Drosophila_melanogaster
ENSMUSG00000036138	Acaa1a	90	38.481	ENSG00000167315	ACAA2	99	39.420	Homo_sapiens
ENSMUSG00000036138	Acaa1a	90	34.097	ENSG00000075239	ACAT1	90	34.097	Homo_sapiens
ENSMUSG00000036138	Acaa1a	96	34.416	ENSG00000138029	HADHB	95	34.416	Homo_sapiens
ENSMUSG00000036138	Acaa1a	96	33.117	ENSMUSG00000059447	Hadhb	95	33.117	Mus_musculus
ENSMUSG00000036138	Acaa1a	99	51.039	YIL160C	POT1	99	51.039	Saccharomyces_cerevisiae
ENSMUSG00000036138	Acaa1a	91	34.568	YPL028W	ERG10	99	34.568	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000038	very long-chain fatty acid metabolic process	-	ISO	Process
GO:0003824	catalytic activity	-	IEA	Function
GO:0003985	acetyl-CoA C-acetyltransferase activity	11461119.	TAS	Function
GO:0003988	acetyl-CoA C-acyltransferase activity	21873635.	IBA	Function
GO:0005739	mitochondrion	18614015.	HDA	Component
GO:0005777	peroxisome	21873635.	IBA	Component
GO:0005777	peroxisome	17881773.	IDA	Component
GO:0005777	peroxisome	-	ISO	Component
GO:0005777	peroxisome	11461119.	TAS	Component
GO:0006629	lipid metabolic process	-	IEA	Process
GO:0006631	fatty acid metabolic process	11461119.	TAS	Process
GO:0006635	fatty acid beta-oxidation	21873635.	IBA	Process
GO:0006635	fatty acid beta-oxidation	-	ISO	Process
GO:0008206	bile acid metabolic process	-	ISO	Process
GO:0008775	acetate CoA-transferase activity	-	ISO	Function
GO:0010124	phenylacetate catabolic process	21873635.	IBA	Process
GO:0016401	palmitoyl-CoA oxidase activity	-	ISO	Function
GO:0016740	transferase activity	-	IEA	Function
GO:0016746	transferase activity, transferring acyl groups	-	IEA	Function
GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	-	IEA	Function
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component