EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000036160 (Gene tree)
Gene ID: 20935
Gene Symbol: Surf6
Alias: D2Wsu129e|Surf-6
Full Name: surfeit gene 6
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Minus strand
Length: 14252 bases
Position: chr2:26888628-26902879
Accession: 98447
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000048457	SURF6	PF04935.12	3.2e-37	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27281784	Identification of RNA binding Proteins in Macrophages by Interactome Capture	IC & RAW264.7	2016 Jun 8	Liepelt A	DOI: 10.1074/mcp.M115.056564
23912277	The RNA binding protein repertoire of embryonic stem cells	IC & mESC	2013 Aug 4	Kwon SC	DOI: 10.1038/nsmb.2638
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	RBDmap & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000047632	-	2971	-	ENSMUSP00000048457	355 (aa)	-	P70279
ENSMUST00000114043	-	894	-	ENSMUSP00000109677	208 (aa)	-	A2ALA0
ENSMUST00000129554	-	653	-	-	- (aa)	-	-
ENSMUST00000127691	-	372	-	-	- (aa)	-	-
ENSMUST00000137904	-	680	-	-	- (aa)	-	-
ENSMUST00000140392	-	1372	-	-	- (aa)	-	-
ENSMUST00000142131	-	748	-	-	- (aa)	-	-

Gene Model

Click here to download ENSMUSG00000036160's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000036160's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000036160	Surf6	99	72.778	ENSG00000148296	SURF6	99	72.778	Homo_sapiens
ENSMUSG00000036160	Surf6	99	44.384	ENSAPOG00000021015	surf6	99	41.667	Acanthochromis_polyacanthus
ENSMUSG00000036160	Surf6	99	66.396	ENSAMEG00000011733	SURF6	100	66.396	Ailuropoda_melanoleuca
ENSMUSG00000036160	Surf6	99	43.089	ENSAOCG00000015839	surf6	99	40.659	Amphiprion_ocellaris
ENSMUSG00000036160	Surf6	99	42.547	ENSAPEG00000022442	surf6	99	40.278	Amphiprion_percula
ENSMUSG00000036160	Surf6	99	43.094	ENSATEG00000012640	surf6	99	43.370	Anabas_testudineus
ENSMUSG00000036160	Surf6	88	52.681	ENSAPLG00000005069	SURF6	84	56.071	Anas_platyrhynchos
ENSMUSG00000036160	Surf6	100	69.748	ENSANAG00000021046	SURF6	100	70.868	Aotus_nancymaae
ENSMUSG00000036160	Surf6	99	47.283	ENSACLG00000027819	surf6	99	42.234	Astatotilapia_calliptera
ENSMUSG00000036160	Surf6	99	44.444	ENSAMXG00000012546	surf6	99	42.298	Astyanax_mexicanus
ENSMUSG00000036160	Surf6	100	68.627	ENSBTAG00000011554	SURF6	100	68.627	Bos_taurus
ENSMUSG00000036160	Surf6	100	68.802	ENSCJAG00000017951	SURF6	100	69.081	Callithrix_jacchus
ENSMUSG00000036160	Surf6	100	62.817	ENSCAFG00000005159	-	100	62.674	Canis_familiaris
ENSMUSG00000036160	Surf6	100	69.014	ENSCAFG00000019758	-	100	69.081	Canis_familiaris
ENSMUSG00000036160	Surf6	100	69.014	ENSCAFG00020001156	SURF6	100	69.081	Canis_lupus_dingo
ENSMUSG00000036160	Surf6	100	67.135	ENSCHIG00000025220	SURF6	100	67.227	Capra_hircus
ENSMUSG00000036160	Surf6	100	71.629	ENSTSYG00000008431	SURF6	100	71.629	Carlito_syrichta
ENSMUSG00000036160	Surf6	91	72.000	ENSCAPG00000010696	SURF6	100	72.000	Cavia_aperea
ENSMUSG00000036160	Surf6	100	71.788	ENSCPOG00000030454	SURF6	100	72.346	Cavia_porcellus
ENSMUSG00000036160	Surf6	64	78.696	ENSCCAG00000025688	SURF6	100	78.696	Cebus_capucinus
ENSMUSG00000036160	Surf6	99	72.500	ENSCATG00000042004	SURF6	99	72.500	Cercocebus_atys
ENSMUSG00000036160	Surf6	99	73.109	ENSCLAG00000004429	SURF6	89	73.389	Chinchilla_lanigera
ENSMUSG00000036160	Surf6	99	68.871	ENSCSAG00000015203	-	99	68.785	Chlorocebus_sabaeus
ENSMUSG00000036160	Surf6	99	72.778	ENSCSAG00000018888	-	99	73.056	Chlorocebus_sabaeus
ENSMUSG00000036160	Surf6	99	53.825	ENSCPBG00000021169	SURF6	99	54.521	Chrysemys_picta_bellii
ENSMUSG00000036160	Surf6	59	87.500	ENSCANG00000035022	SURF6	84	87.500	Colobus_angolensis_palliatus
ENSMUSG00000036160	Surf6	100	83.380	ENSCGRG00000017035	Surf6	100	83.380	Cricetulus_griseus_crigri
ENSMUSG00000036160	Surf6	99	44.972	ENSCSEG00000015172	surf6	99	45.961	Cynoglossus_semilaevis
ENSMUSG00000036160	Surf6	74	51.128	ENSCVAG00000015730	surf6	81	51.128	Cyprinodon_variegatus
ENSMUSG00000036160	Surf6	99	40.650	ENSDARG00000035427	surf6	100	40.650	Danio_rerio
ENSMUSG00000036160	Surf6	100	69.382	ENSDNOG00000049519	SURF6	97	69.382	Dasypus_novemcinctus
ENSMUSG00000036160	Surf6	100	74.930	ENSDORG00000010761	Surf6	100	74.930	Dipodomys_ordii
ENSMUSG00000036160	Surf6	91	62.883	ENSETEG00000004239	SURF6	99	65.337	Echinops_telfairi
ENSMUSG00000036160	Surf6	100	67.697	ENSEASG00005009885	SURF6	100	67.697	Equus_asinus_asinus
ENSMUSG00000036160	Surf6	100	68.258	ENSECAG00000021229	SURF6	100	68.258	Equus_caballus
ENSMUSG00000036160	Surf6	63	74.222	ENSEEUG00000001732	-	100	74.222	Erinaceus_europaeus
ENSMUSG00000036160	Surf6	80	68.990	ENSEEUG00000011071	-	99	68.990	Erinaceus_europaeus
ENSMUSG00000036160	Surf6	100	67.606	ENSFCAG00000040914	SURF6	100	67.606	Felis_catus
ENSMUSG00000036160	Surf6	99	50.556	ENSFALG00000001495	SURF6	99	50.278	Ficedula_albicollis
ENSMUSG00000036160	Surf6	90	72.222	ENSFDAG00000007052	SURF6	99	72.222	Fukomys_damarensis
ENSMUSG00000036160	Surf6	99	44.959	ENSFHEG00000002290	surf6	99	46.322	Fundulus_heteroclitus
ENSMUSG00000036160	Surf6	99	49.861	ENSGALG00000038413	SURF6	100	50.416	Gallus_gallus
ENSMUSG00000036160	Surf6	99	44.744	ENSGAFG00000013618	surf6	99	41.783	Gambusia_affinis
ENSMUSG00000036160	Surf6	99	52.255	ENSGAGG00000010286	SURF6	99	52.520	Gopherus_agassizii
ENSMUSG00000036160	Surf6	99	73.056	ENSGGOG00000014426	SURF6	99	73.056	Gorilla_gorilla
ENSMUSG00000036160	Surf6	99	47.283	ENSHBUG00000008764	surf6	99	42.234	Haplochromis_burtoni
ENSMUSG00000036160	Surf6	100	72.905	ENSHGLG00000013027	SURF6	100	72.905	Heterocephalus_glaber_female
ENSMUSG00000036160	Surf6	91	73.231	ENSHGLG00100015654	SURF6	82	73.231	Heterocephalus_glaber_male
ENSMUSG00000036160	Surf6	99	45.879	ENSHCOG00000001639	surf6	99	41.322	Hippocampus_comes
ENSMUSG00000036160	Surf6	99	37.978	ENSIPUG00000008066	surf6	81	42.321	Ictalurus_punctatus
ENSMUSG00000036160	Surf6	100	68.333	ENSSTOG00000020164	SURF6	100	70.278	Ictidomys_tridecemlineatus
ENSMUSG00000036160	Surf6	100	73.596	ENSJJAG00000016287	Surf6	100	75.281	Jaculus_jaculus
ENSMUSG00000036160	Surf6	99	46.089	ENSKMAG00000009936	surf6	100	43.733	Kryptolebias_marmoratus
ENSMUSG00000036160	Surf6	97	44.350	ENSLBEG00000024311	surf6	99	44.633	Labrus_bergylta
ENSMUSG00000036160	Surf6	98	45.070	ENSLACG00000013322	SURF6	99	43.785	Latimeria_chalumnae
ENSMUSG00000036160	Surf6	100	45.989	ENSLOCG00000004072	surf6	100	46.257	Lepisosteus_oculatus
ENSMUSG00000036160	Surf6	100	69.188	ENSLAFG00000026419	SURF6	100	69.188	Loxodonta_africana
ENSMUSG00000036160	Surf6	90	72.783	ENSMMUG00000022339	-	99	72.372	Macaca_mulatta
ENSMUSG00000036160	Surf6	99	72.222	ENSMNEG00000033787	SURF6	99	72.500	Macaca_nemestrina
ENSMUSG00000036160	Surf6	99	72.222	ENSMLEG00000028750	SURF6	99	72.222	Mandrillus_leucophaeus
ENSMUSG00000036160	Surf6	99	40.331	ENSMAMG00000018269	surf6	99	41.274	Mastacembelus_armatus
ENSMUSG00000036160	Surf6	99	47.283	ENSMZEG00005003188	surf6	99	42.234	Maylandia_zebra
ENSMUSG00000036160	Surf6	99	50.693	ENSMGAG00000006371	SURF6	100	50.693	Meleagris_gallopavo
ENSMUSG00000036160	Surf6	100	85.070	ENSMAUG00000020676	Surf6	100	85.070	Mesocricetus_auratus
ENSMUSG00000036160	Surf6	100	72.753	ENSMICG00000046077	SURF6	100	72.753	Microcebus_murinus
ENSMUSG00000036160	Surf6	100	84.789	ENSMOCG00000011956	Surf6	100	84.789	Microtus_ochrogaster
ENSMUSG00000036160	Surf6	99	59.722	ENSMODG00000012744	SURF6	99	60.331	Monodelphis_domestica
ENSMUSG00000036160	Surf6	99	41.322	ENSMALG00000012310	surf6	99	41.436	Monopterus_albus
ENSMUSG00000036160	Surf6	100	97.183	MGP_CAROLIEiJ_G0023325	Surf6	100	97.183	Mus_caroli
ENSMUSG00000036160	Surf6	100	93.803	MGP_PahariEiJ_G0024782	Surf6	100	93.803	Mus_pahari
ENSMUSG00000036160	Surf6	100	98.310	MGP_SPRETEiJ_G0024242	Surf6	100	98.310	Mus_spretus
ENSMUSG00000036160	Surf6	99	64.578	ENSMPUG00000012416	SURF6	94	64.208	Mustela_putorius_furo
ENSMUSG00000036160	Surf6	100	75.493	ENSNGAG00000015358	Surf6	100	75.775	Nannospalax_galili
ENSMUSG00000036160	Surf6	99	42.507	ENSNBRG00000007805	surf6	99	42.424	Neolamprologus_brichardi
ENSMUSG00000036160	Surf6	99	69.167	ENSNLEG00000013079	SURF6	99	69.167	Nomascus_leucogenys
ENSMUSG00000036160	Surf6	70	56.972	ENSMEUG00000006545	-	69	57.540	Notamacropus_eugenii
ENSMUSG00000036160	Surf6	50	79.775	ENSOPRG00000000430	-	100	73.128	Ochotona_princeps
ENSMUSG00000036160	Surf6	100	72.222	ENSODEG00000015789	SURF6	100	72.222	Octodon_degus
ENSMUSG00000036160	Surf6	98	46.027	ENSONIG00000011294	surf6	98	41.504	Oreochromis_niloticus
ENSMUSG00000036160	Surf6	99	45.225	ENSOANG00000011709	-	99	44.944	Ornithorhynchus_anatinus
ENSMUSG00000036160	Surf6	99	43.548	ENSORLG00000003980	surf6	86	40.162	Oryzias_latipes
ENSMUSG00000036160	Surf6	99	43.280	ENSORLG00020009339	surf6	86	39.892	Oryzias_latipes_hni
ENSMUSG00000036160	Surf6	99	43.280	ENSORLG00015016272	surf6	86	39.892	Oryzias_latipes_hsok
ENSMUSG00000036160	Surf6	98	43.956	ENSOMEG00000011772	surf6	86	38.504	Oryzias_melastigma
ENSMUSG00000036160	Surf6	100	71.348	ENSOGAG00000027199	SURF6	100	71.629	Otolemur_garnettii
ENSMUSG00000036160	Surf6	74	58.712	ENSOARG00000003711	SURF6	99	54.012	Ovis_aries
ENSMUSG00000036160	Surf6	99	73.056	ENSPPAG00000032305	SURF6	99	73.056	Pan_paniscus
ENSMUSG00000036160	Surf6	100	67.606	ENSPPRG00000003090	SURF6	100	67.606	Panthera_pardus
ENSMUSG00000036160	Surf6	99	73.056	ENSPTRG00000021514	SURF6	99	73.056	Pan_troglodytes
ENSMUSG00000036160	Surf6	99	71.667	ENSPANG00000026036	SURF6	99	71.667	Papio_anubis
ENSMUSG00000036160	Surf6	99	44.505	ENSPKIG00000025080	surf6	90	44.231	Paramormyrops_kingsleyae
ENSMUSG00000036160	Surf6	99	52.055	ENSPSIG00000011771	SURF6	99	52.329	Pelodiscus_sinensis
ENSMUSG00000036160	Surf6	75	46.739	ENSPMGG00000004798	surf6	99	42.953	Periophthalmus_magnuspinnatus
ENSMUSG00000036160	Surf6	100	84.507	ENSPEMG00000012589	Surf6	100	84.507	Peromyscus_maniculatus_bairdii
ENSMUSG00000036160	Surf6	99	56.284	ENSPCIG00000017358	SURF6	99	59.945	Phascolarctos_cinereus
ENSMUSG00000036160	Surf6	99	47.778	ENSPLAG00000021874	surf6	99	43.978	Poecilia_latipinna
ENSMUSG00000036160	Surf6	79	52.249	ENSPMEG00000009994	surf6	82	46.154	Poecilia_mexicana
ENSMUSG00000036160	Surf6	99	47.778	ENSPMEG00000009276	surf6	99	43.978	Poecilia_mexicana
ENSMUSG00000036160	Surf6	73	52.809	ENSPREG00000021969	surf6	86	47.744	Poecilia_reticulata
ENSMUSG00000036160	Surf6	99	71.944	ENSPPYG00000019728	SURF6	99	73.056	Pongo_abelii
ENSMUSG00000036160	Surf6	85	60.726	ENSPCAG00000002906	SURF6	99	61.056	Procavia_capensis
ENSMUSG00000036160	Surf6	100	71.588	ENSPCOG00000015707	SURF6	100	71.588	Propithecus_coquereli
ENSMUSG00000036160	Surf6	100	62.570	ENSPVAG00000017042	SURF6	100	62.570	Pteropus_vampyrus
ENSMUSG00000036160	Surf6	99	47.283	ENSPNYG00000003445	surf6	99	42.234	Pundamilia_nyererei
ENSMUSG00000036160	Surf6	69	49.804	ENSPNAG00000006939	surf6	69	49.020	Pygocentrus_nattereri
ENSMUSG00000036160	Surf6	100	87.887	ENSRNOG00000005031	Surf6	100	88.202	Rattus_norvegicus
ENSMUSG00000036160	Surf6	99	72.778	ENSRBIG00000028268	SURF6	99	73.056	Rhinopithecus_bieti
ENSMUSG00000036160	Surf6	99	72.778	ENSRROG00000012667	SURF6	99	73.056	Rhinopithecus_roxellana
ENSMUSG00000036160	Surf6	100	62.291	ENSSBOG00000024264	-	100	63.966	Saimiri_boliviensis_boliviensis
ENSMUSG00000036160	Surf6	100	58.152	ENSSHAG00000003742	SURF6	100	60.111	Sarcophilus_harrisii
ENSMUSG00000036160	Surf6	99	43.272	ENSSFOG00015016640	surf6	97	44.855	Scleropages_formosus
ENSMUSG00000036160	Surf6	99	47.527	ENSSMAG00000009846	surf6	99	44.780	Scophthalmus_maximus
ENSMUSG00000036160	Surf6	98	43.802	ENSSDUG00000007947	surf6	99	40.833	Seriola_dumerili
ENSMUSG00000036160	Surf6	99	45.179	ENSSLDG00000015027	surf6	99	40.331	Seriola_lalandi_dorsalis
ENSMUSG00000036160	Surf6	99	49.725	ENSSPUG00000015954	SURF6	99	50.135	Sphenodon_punctatus
ENSMUSG00000036160	Surf6	99	43.360	ENSSPAG00000005916	surf6	99	40.997	Stegastes_partitus
ENSMUSG00000036160	Surf6	100	66.027	ENSSSCG00000032106	SURF6	100	66.197	Sus_scrofa
ENSMUSG00000036160	Surf6	99	48.533	ENSTGUG00000005438	-	100	48.533	Taeniopygia_guttata
ENSMUSG00000036160	Surf6	70	61.538	ENSTGUG00000005445	-	99	61.538	Taeniopygia_guttata
ENSMUSG00000036160	Surf6	99	45.355	ENSTRUG00000023872	surf6	99	40.833	Takifugu_rubripes
ENSMUSG00000036160	Surf6	99	45.604	ENSTNIG00000007503	surf6	99	45.983	Tetraodon_nigroviridis
ENSMUSG00000036160	Surf6	100	67.486	ENSUAMG00000014627	SURF6	100	68.033	Ursus_americanus
ENSMUSG00000036160	Surf6	100	69.296	ENSVVUG00000027289	SURF6	100	69.296	Vulpes_vulpes
ENSMUSG00000036160	Surf6	99	44.290	ENSXETG00000005018	surf6	99	44.382	Xenopus_tropicalis
ENSMUSG00000036160	Surf6	99	46.260	ENSXCOG00000001322	surf6	99	42.297	Xiphophorus_couchianus
ENSMUSG00000036160	Surf6	99	47.500	ENSXMAG00000024608	surf6	99	42.135	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001652	granular component	8639267.	IDA	Component
GO:0003677	DNA binding	21873635.	IBA	Function
GO:0003677	DNA binding	9548374.	IDA	Function
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	9548374.	IDA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005654	nucleoplasm	16855206.	IDA	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	16855206.	IDA	Component
GO:0022625	cytosolic large ribosomal subunit	21873635.	IBA	Component
GO:0042254	ribosome biogenesis	16855206.	IMP	Process
GO:0042255	ribosome assembly	8639267.	NAS	Process
GO:0042273	ribosomal large subunit biogenesis	21873635.	IBA	Process
GO:0042274	ribosomal small subunit biogenesis	21873635.	IBA	Process