EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000036180 (Gene tree)
Gene ID: 234366
Gene Symbol: Gatad2a
Alias: 1110066C11Rik
Full Name: GATA zinc finger domain containing 2A
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Minus strand
Length: 89309
Position: chr8: 69907076-69996384
Accession: 2384585
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000116463	-	3363	-	ENSMUSP00000112164	629 (aa)	-	Q8CHY6
ENSMUST00000211960	-	507	-	ENSMUSP00000148579	99 (aa)	-	A0A1D5RM07
ENSMUST00000212478	-	3622	XM_011242295	ENSMUSP00000148474	629 (aa)	XP_011240597	Q8CHY6
ENSMUST00000177851	-	5007	XM_006509638	ENSMUSP00000137386	614 (aa)	XP_006509701	A0A1I7Q4G8
ENSMUST00000212277	-	551	-	ENSMUSP00000148637	161 (aa)	-	A0A1D5RM58
ENSMUST00000065169	-	3812	XM_006509636	ENSMUSP00000070229	630 (aa)	XP_006509699	E9QMN5

Gene Model

Click here to download ENSMUSG00000036180's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000036180's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000036180	Gatad2a	99	39.939	ENSG00000143614	GATAD2B	99	39.091	Homo_sapiens
ENSMUSG00000036180	Gatad2a	99	39.450	ENSMUSG00000042390	Gatad2b	99	38.720	Mus_musculus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0001568	blood vessel development	17565372.	IMP	Process
GO:0001701	in utero embryonic development	17565372.	IMP	Process
GO:0001842	neural fold formation	17565372.	IMP	Process
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0010172	embryonic body morphogenesis	17565372.	IMP	Process
GO:0012501	programmed cell death	17565372.	IMP	Process
GO:0016581	NuRD complex	21873635.	IBA	Component
GO:0016581	NuRD complex	-	ISO	Component
GO:0021506	anterior neuropore closure	17565372.	IMP	Process
GO:0030674	protein binding, bridging	-	ISO	Function
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function