EuRBPDB

Description

RBDs

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000036202 (Gene tree)
Gene ID: 51869
Gene Symbol: Rif1
Alias: 5730435J01Rik|6530403D07Rik|D2Ertd145e
Full Name: replication timing regulatory factor 1
Gene Type: protein_coding
Species: Mus_musculus
Status: confidence
Strand: Plus strand
Length: 49552 bases
Position: chr2:52072832-52122383
Accession: 1098622
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSMUSP00000108313	Rif1_N	PF12231.8	3.7e-73	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27768875	High Resolution Mapping of RNA Binding Regions in the Nuclear Proteome of Embryonic Stem Cells	nIC & mESC	2016.09	He C	DOI: 10.1016/j.molcel.2016.09.034

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000145130	-	2789	-	-	- (aa)	-	-
ENSMUST00000126218	-	304	-	ENSMUSP00000153998	44 (aa)	-	A0A2I3BQB0
ENSMUST00000125322	-	3601	-	ENSMUSP00000154086	740 (aa)	-	A0A2I3BQI4
ENSMUST00000152178	-	2784	-	ENSMUSP00000154009	535 (aa)	-	A0A2I3BQ21
ENSMUST00000112693	-	8509	XM_006498177	ENSMUSP00000108313	2426 (aa)	XP_006498242	Q6PR54
ENSMUST00000125116	-	822	-	-	- (aa)	-	-
ENSMUST00000125376	-	3885	-	ENSMUSP00000154538	731 (aa)	-	A0A2I3BRD9

Gene Model

Click here to download ENSMUSG00000036202's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu04550	Signaling pathways regulating pluripotency of stem cells	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000036202's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000036202	Rif1	100	70.040	ENSG00000080345	RIF1	97	84.801	Homo_sapiens
ENSMUSG00000036202	Rif1	100	69.802	ENSAMEG00000008461	RIF1	100	69.802	Ailuropoda_melanoleuca
ENSMUSG00000036202	Rif1	68	49.167	ENSACIG00000017765	rif1	73	49.015	Amphilophus_citrinellus
ENSMUSG00000036202	Rif1	64	48.494	ENSAOCG00000017231	rif1	63	48.415	Amphiprion_ocellaris
ENSMUSG00000036202	Rif1	70	54.061	ENSAPEG00000013228	rif1	65	53.231	Amphiprion_percula
ENSMUSG00000036202	Rif1	72	44.208	ENSATEG00000022887	rif1	67	46.884	Anabas_testudineus
ENSMUSG00000036202	Rif1	88	65.318	ENSAPLG00000007092	RIF1	96	65.318	Anas_platyrhynchos
ENSMUSG00000036202	Rif1	85	57.612	ENSACAG00000003714	RIF1	90	57.612	Anolis_carolinensis
ENSMUSG00000036202	Rif1	100	69.345	ENSANAG00000024840	RIF1	99	69.265	Aotus_nancymaae
ENSMUSG00000036202	Rif1	51	51.104	ENSAMXG00000010910	rif1	52	50.933	Astyanax_mexicanus
ENSMUSG00000036202	Rif1	94	68.983	ENSBTAG00000021020	RIF1	99	68.983	Bos_taurus
ENSMUSG00000036202	Rif1	100	68.783	ENSCJAG00000003138	RIF1	99	68.742	Callithrix_jacchus
ENSMUSG00000036202	Rif1	100	67.721	ENSCAFG00000005670	RIF1	97	67.814	Canis_familiaris
ENSMUSG00000036202	Rif1	100	68.462	ENSCAFG00020016401	RIF1	99	68.555	Canis_lupus_dingo
ENSMUSG00000036202	Rif1	100	69.212	ENSCHIG00000020327	RIF1	99	69.160	Capra_hircus
ENSMUSG00000036202	Rif1	97	81.720	ENSTSYG00000008861	RIF1	99	81.720	Carlito_syrichta
ENSMUSG00000036202	Rif1	79	79.070	ENSCAPG00000008957	RIF1	99	79.070	Cavia_aperea
ENSMUSG00000036202	Rif1	100	67.072	ENSCPOG00000037898	RIF1	99	67.072	Cavia_porcellus
ENSMUSG00000036202	Rif1	100	68.597	ENSCCAG00000024760	RIF1	99	68.516	Cebus_capucinus
ENSMUSG00000036202	Rif1	100	70.189	ENSCATG00000033353	RIF1	99	70.108	Cercocebus_atys
ENSMUSG00000036202	Rif1	96	67.490	ENSCLAG00000001517	RIF1	99	67.490	Chinchilla_lanigera
ENSMUSG00000036202	Rif1	100	70.056	ENSCSAG00000016089	RIF1	99	69.976	Chlorocebus_sabaeus
ENSMUSG00000036202	Rif1	97	69.620	ENSCHOG00000007187	RIF1	97	69.620	Choloepus_hoffmanni
ENSMUSG00000036202	Rif1	89	68.129	ENSCPBG00000025885	RIF1	94	69.298	Chrysemys_picta_bellii
ENSMUSG00000036202	Rif1	100	68.712	ENSCANG00000028962	RIF1	100	69.282	Colobus_angolensis_palliatus
ENSMUSG00000036202	Rif1	100	80.573	ENSCGRG00001024589	Rif1	100	80.908	Cricetulus_griseus_chok1gshd
ENSMUSG00000036202	Rif1	99	81.258	ENSCGRG00000010713	Rif1	100	81.596	Cricetulus_griseus_crigri
ENSMUSG00000036202	Rif1	62	50.958	ENSCSEG00000003945	rif1	65	50.958	Cynoglossus_semilaevis
ENSMUSG00000036202	Rif1	64	47.496	ENSCVAG00000022479	rif1	61	50.967	Cyprinodon_variegatus
ENSMUSG00000036202	Rif1	71	47.484	ENSDARG00000062650	rif1	65	50.849	Danio_rerio
ENSMUSG00000036202	Rif1	99	67.674	ENSDNOG00000011194	RIF1	97	67.594	Dasypus_novemcinctus
ENSMUSG00000036202	Rif1	92	68.981	ENSETEG00000012421	RIF1	91	68.882	Echinops_telfairi
ENSMUSG00000036202	Rif1	91	87.622	ENSEASG00005023434	RIF1	98	87.622	Equus_asinus_asinus
ENSMUSG00000036202	Rif1	97	85.202	ENSECAG00000012679	RIF1	99	85.202	Equus_caballus
ENSMUSG00000036202	Rif1	66	49.064	ENSELUG00000006826	rif1	58	48.591	Esox_lucius
ENSMUSG00000036202	Rif1	100	68.324	ENSFCAG00000029742	RIF1	99	68.444	Felis_catus
ENSMUSG00000036202	Rif1	78	62.048	ENSFALG00000013874	RIF1	91	62.048	Ficedula_albicollis
ENSMUSG00000036202	Rif1	100	69.200	ENSFDAG00000006538	RIF1	99	69.119	Fukomys_damarensis
ENSMUSG00000036202	Rif1	63	49.757	ENSFHEG00000013721	rif1	65	49.479	Fundulus_heteroclitus
ENSMUSG00000036202	Rif1	56	49.428	ENSGMOG00000003517	rif1	83	49.200	Gadus_morhua
ENSMUSG00000036202	Rif1	80	58.015	ENSGALG00000012484	RIF1	85	58.015	Gallus_gallus
ENSMUSG00000036202	Rif1	64	53.586	ENSGAFG00000017196	rif1	64	57.843	Gambusia_affinis
ENSMUSG00000036202	Rif1	60	53.540	ENSGACG00000008579	rif1	60	52.100	Gasterosteus_aculeatus
ENSMUSG00000036202	Rif1	89	67.449	ENSGAGG00000012595	RIF1	99	68.622	Gopherus_agassizii
ENSMUSG00000036202	Rif1	89	85.957	ENSGGOG00000040178	RIF1	96	85.957	Gorilla_gorilla
ENSMUSG00000036202	Rif1	74	50.542	ENSHBUG00000007125	rif1	69	50.542	Haplochromis_burtoni
ENSMUSG00000036202	Rif1	94	68.157	ENSHGLG00100009807	RIF1	99	68.072	Heterocephalus_glaber_male
ENSMUSG00000036202	Rif1	64	49.358	ENSHCOG00000015943	rif1	59	49.475	Hippocampus_comes
ENSMUSG00000036202	Rif1	100	71.314	ENSSTOG00000020712	RIF1	99	71.314	Ictidomys_tridecemlineatus
ENSMUSG00000036202	Rif1	99	69.416	ENSJJAG00000023000	Rif1	100	69.539	Jaculus_jaculus
ENSMUSG00000036202	Rif1	62	51.331	ENSLBEG00000023196	rif1	58	51.331	Labrus_bergylta
ENSMUSG00000036202	Rif1	66	62.319	ENSLACG00000005425	RIF1	68	62.319	Latimeria_chalumnae
ENSMUSG00000036202	Rif1	64	52.955	ENSLOCG00000002657	rif1	82	49.521	Lepisosteus_oculatus
ENSMUSG00000036202	Rif1	100	68.543	ENSLAFG00000009796	RIF1	100	68.462	Loxodonta_africana
ENSMUSG00000036202	Rif1	100	70.108	ENSMFAG00000032233	RIF1	99	70.028	Macaca_fascicularis
ENSMUSG00000036202	Rif1	100	70.108	ENSMMUG00000008611	RIF1	99	70.028	Macaca_mulatta
ENSMUSG00000036202	Rif1	100	70.149	ENSMNEG00000031616	RIF1	99	70.068	Macaca_nemestrina
ENSMUSG00000036202	Rif1	100	70.269	ENSMLEG00000042945	RIF1	99	70.189	Mandrillus_leucophaeus
ENSMUSG00000036202	Rif1	59	50.674	ENSMAMG00000001745	rif1	84	50.358	Mastacembelus_armatus
ENSMUSG00000036202	Rif1	65	50.000	ENSMZEG00005020920	rif1	70	49.693	Maylandia_zebra
ENSMUSG00000036202	Rif1	83	60.955	ENSMGAG00000012732	RIF1	90	61.473	Meleagris_gallopavo
ENSMUSG00000036202	Rif1	95	94.262	ENSMAUG00000013158	Rif1	99	94.262	Mesocricetus_auratus
ENSMUSG00000036202	Rif1	100	70.517	ENSMICG00000046127	RIF1	99	70.517	Microcebus_murinus
ENSMUSG00000036202	Rif1	100	78.642	ENSMOCG00000009381	Rif1	100	78.642	Microtus_ochrogaster
ENSMUSG00000036202	Rif1	63	48.722	ENSMMOG00000006519	rif1	63	48.083	Mola_mola
ENSMUSG00000036202	Rif1	100	56.574	ENSMODG00000003703	RIF1	99	56.695	Monodelphis_domestica
ENSMUSG00000036202	Rif1	58	51.699	ENSMALG00000016759	rif1	65	51.699	Monopterus_albus
ENSMUSG00000036202	Rif1	100	95.136	MGP_CAROLIEiJ_G0023555	Rif1	100	95.136	Mus_caroli
ENSMUSG00000036202	Rif1	100	90.161	MGP_PahariEiJ_G0025006	Rif1	100	90.161	Mus_pahari
ENSMUSG00000036202	Rif1	100	98.063	MGP_SPRETEiJ_G0024476	Rif1	100	98.063	Mus_spretus
ENSMUSG00000036202	Rif1	100	68.795	ENSMPUG00000000371	RIF1	99	68.795	Mustela_putorius_furo
ENSMUSG00000036202	Rif1	89	67.787	ENSMLUG00000003376	RIF1	100	67.787	Myotis_lucifugus
ENSMUSG00000036202	Rif1	100	73.901	ENSNGAG00000009268	Rif1	99	73.901	Nannospalax_galili
ENSMUSG00000036202	Rif1	62	50.685	ENSNBRG00000014257	rif1	69	48.897	Neolamprologus_brichardi
ENSMUSG00000036202	Rif1	100	68.413	ENSNLEG00000010955	RIF1	99	68.333	Nomascus_leucogenys
ENSMUSG00000036202	Rif1	79	75.446	ENSMEUG00000007601	-	85	75.446	Notamacropus_eugenii
ENSMUSG00000036202	Rif1	100	67.789	ENSODEG00000003950	RIF1	99	67.951	Octodon_degus
ENSMUSG00000036202	Rif1	53	49.473	ENSONIG00000013657	rif1	61	49.172	Oreochromis_niloticus
ENSMUSG00000036202	Rif1	76	72.778	ENSOANG00000006078	-	78	72.778	Ornithorhynchus_anatinus
ENSMUSG00000036202	Rif1	100	67.685	ENSOCUG00000017435	RIF1	99	67.685	Oryctolagus_cuniculus
ENSMUSG00000036202	Rif1	64	47.566	ENSORLG00020001302	rif1	68	47.570	Oryzias_latipes_hni
ENSMUSG00000036202	Rif1	64	47.566	ENSORLG00015000009	rif1	67	47.725	Oryzias_latipes_hsok
ENSMUSG00000036202	Rif1	64	48.010	ENSOMEG00000021513	rif1	68	47.857	Oryzias_melastigma
ENSMUSG00000036202	Rif1	100	68.324	ENSOGAG00000006141	RIF1	99	68.324	Otolemur_garnettii
ENSMUSG00000036202	Rif1	100	69.385	ENSOARG00000008930	RIF1	99	69.333	Ovis_aries
ENSMUSG00000036202	Rif1	100	69.972	ENSPPAG00000023754	RIF1	99	69.892	Pan_paniscus
ENSMUSG00000036202	Rif1	100	68.189	ENSPPRG00000003618	RIF1	99	68.297	Panthera_pardus
ENSMUSG00000036202	Rif1	100	68.229	ENSPTIG00000020652	RIF1	99	68.337	Panthera_tigris_altaica
ENSMUSG00000036202	Rif1	100	70.092	ENSPTRG00000012534	RIF1	99	70.012	Pan_troglodytes
ENSMUSG00000036202	Rif1	100	69.988	ENSPANG00000008525	RIF1	99	69.908	Papio_anubis
ENSMUSG00000036202	Rif1	71	48.788	ENSPKIG00000004267	rif1	71	51.849	Paramormyrops_kingsleyae
ENSMUSG00000036202	Rif1	72	43.038	ENSPMGG00000016141	rif1	76	44.532	Periophthalmus_magnuspinnatus
ENSMUSG00000036202	Rif1	99	80.964	ENSPEMG00000000446	Rif1	99	81.005	Peromyscus_maniculatus_bairdii
ENSMUSG00000036202	Rif1	89	73.373	ENSPCIG00000009185	RIF1	93	67.876	Phascolarctos_cinereus
ENSMUSG00000036202	Rif1	57	52.222	ENSPFOG00000000554	-	65	51.852	Poecilia_formosa
ENSMUSG00000036202	Rif1	64	51.397	ENSPFOG00000017804	rif1	67	51.237	Poecilia_formosa
ENSMUSG00000036202	Rif1	64	51.362	ENSPLAG00000017945	rif1	69	51.202	Poecilia_latipinna
ENSMUSG00000036202	Rif1	53	50.197	ENSPMEG00000006897	-	63	49.803	Poecilia_mexicana
ENSMUSG00000036202	Rif1	65	50.507	ENSPREG00000018052	rif1	65	53.584	Poecilia_reticulata
ENSMUSG00000036202	Rif1	100	70.120	ENSPPYG00000012846	RIF1	99	70.040	Pongo_abelii
ENSMUSG00000036202	Rif1	83	79.612	ENSPCAG00000009032	RIF1	83	79.612	Procavia_capensis
ENSMUSG00000036202	Rif1	100	70.942	ENSPCOG00000027888	RIF1	99	70.942	Propithecus_coquereli
ENSMUSG00000036202	Rif1	93	82.400	ENSPVAG00000014276	RIF1	95	82.400	Pteropus_vampyrus
ENSMUSG00000036202	Rif1	65	47.846	ENSPNYG00000012940	rif1	69	47.462	Pundamilia_nyererei
ENSMUSG00000036202	Rif1	63	52.377	ENSPNAG00000016685	rif1	64	52.031	Pygocentrus_nattereri
ENSMUSG00000036202	Rif1	100	86.390	ENSRNOG00000054901	Rif1	100	86.349	Rattus_norvegicus
ENSMUSG00000036202	Rif1	100	69.157	ENSRBIG00000003704	RIF1	99	68.956	Rhinopithecus_bieti
ENSMUSG00000036202	Rif1	100	70.000	ENSRROG00000028206	RIF1	99	69.920	Rhinopithecus_roxellana
ENSMUSG00000036202	Rif1	97	83.871	ENSSBOG00000029530	RIF1	99	83.871	Saimiri_boliviensis_boliviensis
ENSMUSG00000036202	Rif1	72	60.312	ENSSHAG00000018552	RIF1	74	59.967	Sarcophilus_harrisii
ENSMUSG00000036202	Rif1	65	51.193	ENSSFOG00015021539	rif1	74	49.926	Scleropages_formosus
ENSMUSG00000036202	Rif1	51	49.097	ENSSMAG00000011704	rif1	63	47.731	Scophthalmus_maximus
ENSMUSG00000036202	Rif1	63	50.280	ENSSDUG00000015632	rif1	68	48.870	Seriola_dumerili
ENSMUSG00000036202	Rif1	63	78.498	ENSSARG00000007161	-	59	78.498	Sorex_araneus
ENSMUSG00000036202	Rif1	87	69.643	ENSSPUG00000003062	RIF1	94	69.643	Sphenodon_punctatus
ENSMUSG00000036202	Rif1	59	56.389	ENSSPAG00000018359	rif1	74	56.389	Stegastes_partitus
ENSMUSG00000036202	Rif1	100	69.398	ENSSSCG00000016395	RIF1	99	69.317	Sus_scrofa
ENSMUSG00000036202	Rif1	65	49.042	ENSTRUG00000015808	rif1	70	47.712	Takifugu_rubripes
ENSMUSG00000036202	Rif1	82	82.803	ENSTBEG00000016082	RIF1	81	82.803	Tupaia_belangeri
ENSMUSG00000036202	Rif1	100	69.936	ENSTTRG00000011190	RIF1	99	69.695	Tursiops_truncatus
ENSMUSG00000036202	Rif1	86	82.458	ENSUAMG00000026385	RIF1	99	67.892	Ursus_americanus
ENSMUSG00000036202	Rif1	100	69.141	ENSUMAG00000000337	RIF1	99	69.249	Ursus_maritimus
ENSMUSG00000036202	Rif1	100	67.913	ENSVPAG00000002162	RIF1	99	67.886	Vicugna_pacos
ENSMUSG00000036202	Rif1	100	68.430	ENSVVUG00000011293	RIF1	99	68.430	Vulpes_vulpes
ENSMUSG00000036202	Rif1	65	47.786	ENSXMAG00000000506	rif1	65	47.928	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	24735877.	IMP	Process
GO:0000723	telomere maintenance	21873635.	IBA	Process
GO:0000723	telomere maintenance	24735877.	IMP	Process
GO:0000781	chromosome, telomeric region	15042697.	IDA	Component
GO:0000790	nuclear chromatin	24735877.	IMP	Component
GO:0000793	condensed chromosome	-	ISO	Component
GO:0001939	female pronucleus	15042697.	IDA	Component
GO:0001940	male pronucleus	15042697.	IDA	Component
GO:0005515	protein binding	17093407.20362541.23306437.23306439.23333305.24735877.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	15042697.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005694	chromosome	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005856	cytoskeleton	-	IEA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006281	DNA repair	-	IEA	Process
GO:0006348	chromatin silencing at telomere	24735877.	IMP	Process
GO:0006974	cellular response to DNA damage stimulus	-	ISO	Process
GO:0007049	cell cycle	-	IEA	Process
GO:0016604	nuclear body	-	ISO	Component
GO:0019827	stem cell population maintenance	16518401.	IMP	Process
GO:0031965	nuclear membrane	-	ISO	Component
GO:0035861	site of double-strand break	23306437.23306439.	IDA	Component
GO:0035861	site of double-strand break	23333305.	IMP	Component
GO:0035861	site of double-strand break	-	ISO	Component
GO:0043247	telomere maintenance in response to DNA damage	-	ISO	Process
GO:0045830	positive regulation of isotype switching	23306439.23333305.23333306.	IMP	Process
GO:0051233	spindle midzone	-	ISO	Component
GO:0051574	positive regulation of histone H3-K9 methylation	24735877.	IMP	Process
GO:1990830	cellular response to leukemia inhibitory factor	20439489.	IEP	Process
GO:2000042	negative regulation of double-strand break repair via homologous recombination	23306437.23333305.	IMP	Process
GO:2000042	negative regulation of double-strand break repair via homologous recombination	-	ISO	Process
GO:2001034	positive regulation of double-strand break repair via nonhomologous end joining	23306437.23333305.	IMP	Process
GO:2001034	positive regulation of double-strand break repair via nonhomologous end joining	-	ISO	Process