EuRBPDB

Description

RBPome

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSMUSG00000036270 (Gene tree)
Gene ID: 234699
Gene Symbol: Edc4
Alias: -
Full Name: enhancer of mRNA decapping 4
Gene Type: protein_coding
Species: Mus_musculus
Status: putative
Strand: Plus strand
Length: 14028
Position: chr8: 105880881-105894908
Accession: 2446249
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27452465	The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart Disease	IC & HL_1	2016 Jul 21	Liao Y	DOI: 10.1016/j.celrep.2016.06.084

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSMUST00000139154	-	738	-	-	- (aa)	-	-
ENSMUST00000136048	-	4560	-	ENSMUSP00000114285	1318 (aa)	-	D6RE33
ENSMUST00000132680	-	1280	-	ENSMUSP00000114209	427 (aa)	-	F6ZJ27
ENSMUST00000040254	-	4780	XM_006530901	ENSMUSP00000039134	1406 (aa)	XP_006530964	G5E896
ENSMUST00000156357	-	802	-	-	- (aa)	-	-
ENSMUST00000145618	-	795	-	ENSMUSP00000118162	265 (aa)	-	F6V5I7
ENSMUST00000119261	-	4645	XM_006530904	ENSMUSP00000113854	1390 (aa)	XP_006530967	A0A0R4J1Q0

Gene Model

Click here to download ENSMUSG00000036270's gene model file

Pathways

Pathway ID	Pathway Name	Source
mmu03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000036270's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSMUSG00000036270	Edc4	100	94.950	ENSG00000038358	EDC4	99	98.148	Homo_sapiens

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000932	P-body	21873635.	IBA	Component
GO:0000932	P-body	20826699.	ISO	Component
GO:0005515	protein binding	20639877.23583643.28254886.	IPI	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0031087	deadenylation-independent decapping of nuclear-transcribed mRNA	21873635.	IBA	Process
GO:0036464	cytoplasmic ribonucleoprotein granule	-	ISO	Component