EuRBPDB

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  • Description
  • RBDs
  • RBPome
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSMUSG00000036550 (Gene tree)
Gene ID
234594
Gene Symbol
Cnot1
Alias
6030411K04Rik
Full Name
CCR4-NOT transcription complex%2C subunit 1
Gene Type
protein_coding
Species
Mus_musculus
Status
confidence
Strand
Minus strand
Length
88014 bases
Position
chr8:95719451-95807464
Accession
2442402
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSMUSP00000148807Not1PF04054.152.2e-15211
ENSMUSP00000096073Not1PF04054.152.2e-15211
ENSMUSP00000063565Not1PF04054.153.1e-12111
RNA binding proteome (RBPome)
PIDTitleMethod TimeAuthorDoi
23912277The RNA binding protein repertoire of embryonic stem cellsIC & mESC2013 Aug 4Kwon SCDOI: 10.1038/nsmb.2638
27452465The Cardiomyocyte RNA Binding Proteome: Links to Intermediary Metabolism and Heart DiseaseIC & HL_12016 Jul 21Liao YDOI: 10.1016/j.celrep.2016.06.084
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSMUST00000211937-500--- (aa)--
ENSMUST00000212228-2925--- (aa)--
ENSMUST00000212323-3277-ENSMUSP00000148574213 (aa)-A0A1D5RM03
ENSMUST00000098473-8390XM_006530870ENSMUSP000000960732376 (aa)XP_006530933Q6ZQ08
ENSMUST00000212415-956-ENSMUSP00000148575122 (aa)-A0A1D5RM04
ENSMUST00000211973-2469-ENSMUSP00000148831823 (aa)-A0A1D5RML9
ENSMUST00000212556-521--- (aa)--
ENSMUST00000213046-550-ENSMUSP0000014870992 (aa)-A0A1D5RMB6
ENSMUST00000212712-656--- (aa)--
ENSMUST00000211887-8364XM_006530872ENSMUSP000001488072369 (aa)XP_006530935A0A1D5RMJ8
ENSMUST00000213006-7479-ENSMUSP000001487351614 (aa)-A0A1D5RMD8
ENSMUST00000212302-3809--- (aa)--
ENSMUST00000212369-479--- (aa)--
ENSMUST00000068452-8152-ENSMUSP000000635652326 (aa)-B7ZWL1
ENSMUST00000212195-696--- (aa)--
ENSMUST00000212340-2381--- (aa)--
ENSMUST00000212535-1546--- (aa)--
Gene Model
Click here to download ENSMUSG00000036550's gene model file
Pathways
Pathway IDPathway NameSource
mmu03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSMUSG00000036550's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSMUSG00000036550Cnot110099.411ENSG00000125107CNOT1100100.000Homo_sapiens
ENSMUSG00000036550Cnot19796.774ENSAPOG00000005042cnot110096.774Acanthochromis_polyacanthus
ENSMUSG00000036550Cnot110099.410ENSAMEG00000017298CNOT110099.410Ailuropoda_melanoleuca
ENSMUSG00000036550Cnot19089.958ENSACIG00000016003cnot110090.285Amphilophus_citrinellus
ENSMUSG00000036550Cnot110090.534ENSAPEG00000022342cnot110090.660Amphiprion_percula
ENSMUSG00000036550Cnot19796.914ENSATEG00000012892cnot110096.914Anabas_testudineus
ENSMUSG00000036550Cnot110097.437ENSAPLG00000007162CNOT110097.437Anas_platyrhynchos
ENSMUSG00000036550Cnot19295.872ENSACAG00000001602CNOT19896.104Anolis_carolinensis
ENSMUSG00000036550Cnot110098.022ENSANAG00000038198CNOT110098.022Aotus_nancymaae
ENSMUSG00000036550Cnot19796.914ENSACLG00000014234cnot110096.914Astatotilapia_calliptera
ENSMUSG00000036550Cnot110090.809ENSAMXG00000013170cnot110091.319Astyanax_mexicanus
ENSMUSG00000036550Cnot110099.537ENSBTAG00000020782CNOT110099.537Bos_taurus
ENSMUSG00000036550Cnot18240.689WBGene00002845let-7119254.430Caenorhabditis_elegans
ENSMUSG00000036550Cnot110099.369ENSCJAG00000011318CNOT110099.369Callithrix_jacchus
ENSMUSG00000036550Cnot110099.160ENSCAFG00000008426CNOT110099.160Canis_familiaris
ENSMUSG00000036550Cnot110099.441ENSCAFG00020010156CNOT110099.441Canis_lupus_dingo
ENSMUSG00000036550Cnot110099.537ENSCHIG00000010452CNOT110099.537Capra_hircus
ENSMUSG00000036550Cnot110099.537ENSTSYG00000006888CNOT110099.537Carlito_syrichta
ENSMUSG00000036550Cnot110094.907ENSCPOG00000013026CNOT110094.907Cavia_porcellus
ENSMUSG00000036550Cnot110097.811ENSCCAG00000026333CNOT110097.811Cebus_capucinus
ENSMUSG00000036550Cnot110099.453ENSCATG00000032625CNOT110099.453Cercocebus_atys
ENSMUSG00000036550Cnot110099.579ENSCLAG00000006289CNOT110099.579Chinchilla_lanigera
ENSMUSG00000036550Cnot110099.453ENSCSAG00000004731CNOT110099.453Chlorocebus_sabaeus
ENSMUSG00000036550Cnot181100.000ENSCHOG00000009712CNOT183100.000Choloepus_hoffmanni
ENSMUSG00000036550Cnot19895.574ENSCPBG00000026222CNOT19998.472Chrysemys_picta_bellii
ENSMUSG00000036550Cnot110058.995ENSCING00000009149-10058.468Ciona_intestinalis
ENSMUSG00000036550Cnot18963.173ENSCSAVG00000002414-9578.808Ciona_savignyi
ENSMUSG00000036550Cnot110097.603ENSCANG00000040534CNOT110097.603Colobus_angolensis_palliatus
ENSMUSG00000036550Cnot110099.832ENSCGRG00001016365Cnot110099.832Cricetulus_griseus_chok1gshd
ENSMUSG00000036550Cnot110099.832ENSCGRG00000001714Cnot110099.832Cricetulus_griseus_crigri
ENSMUSG00000036550Cnot110083.027ENSCVAG00000018930cnot110082.901Cyprinodon_variegatus
ENSMUSG00000036550Cnot110090.004ENSDARG00000004174cnot110089.962Danio_rerio
ENSMUSG00000036550Cnot110096.929ENSDNOG00000013250CNOT110096.929Dasypus_novemcinctus
ENSMUSG00000036550Cnot19946.190FBgn0085436Not19948.104Drosophila_melanogaster
ENSMUSG00000036550Cnot18497.440ENSETEG00000012806CNOT18497.440Echinops_telfairi
ENSMUSG00000036550Cnot18182.212ENSEBUG00000011534cnot19582.212Eptatretus_burgeri
ENSMUSG00000036550Cnot19798.889ENSEASG00005005819CNOT110098.802Equus_asinus_asinus
ENSMUSG00000036550Cnot110099.621ENSECAG00000009889CNOT110099.626Equus_caballus
ENSMUSG00000036550Cnot19098.981ENSEEUG00000006015CNOT19098.981Erinaceus_europaeus
ENSMUSG00000036550Cnot110089.913ENSELUG00000014085cnot110089.635Esox_lucius
ENSMUSG00000036550Cnot110099.245ENSFCAG00000025155CNOT110099.245Felis_catus
ENSMUSG00000036550Cnot110097.475ENSFALG00000007285CNOT110097.475Ficedula_albicollis
ENSMUSG00000036550Cnot110099.495ENSFDAG00000013399CNOT110099.495Fukomys_damarensis
ENSMUSG00000036550Cnot110090.172ENSFHEG00000020574cnot110090.172Fundulus_heteroclitus
ENSMUSG00000036550Cnot19289.518ENSGMOG00000012864cnot110089.842Gadus_morhua
ENSMUSG00000036550Cnot110097.517ENSGALG00000002301CNOT110097.517Gallus_gallus
ENSMUSG00000036550Cnot110089.146ENSGAFG00000015005cnot110089.104Gambusia_affinis
ENSMUSG00000036550Cnot19290.218ENSGACG00000002606cnot110095.631Gasterosteus_aculeatus
ENSMUSG00000036550Cnot110097.560ENSGAGG00000022646CNOT110097.560Gopherus_agassizii
ENSMUSG00000036550Cnot110099.369ENSGGOG00000009547CNOT110099.369Gorilla_gorilla
ENSMUSG00000036550Cnot19796.914ENSHBUG00000001729cnot110096.914Haplochromis_burtoni
ENSMUSG00000036550Cnot110099.411ENSHGLG00000014322CNOT110099.411Heterocephalus_glaber_female
ENSMUSG00000036550Cnot110089.317ENSHCOG00000006501cnot110089.456Hippocampus_comes
ENSMUSG00000036550Cnot110088.819ENSIPUG00000011915cnot110089.281Ictalurus_punctatus
ENSMUSG00000036550Cnot110099.495ENSSTOG00000005490CNOT110099.495Ictidomys_tridecemlineatus
ENSMUSG00000036550Cnot110098.968ENSJJAG00000000633Cnot110098.968Jaculus_jaculus
ENSMUSG00000036550Cnot110090.193ENSKMAG00000006149cnot110090.071Kryptolebias_marmoratus
ENSMUSG00000036550Cnot19596.407ENSLBEG00000004740cnot110096.407Labrus_bergylta
ENSMUSG00000036550Cnot110094.907ENSLACG00000010869CNOT110094.907Latimeria_chalumnae
ENSMUSG00000036550Cnot110092.896ENSLOCG00000006324cnot110092.938Lepisosteus_oculatus
ENSMUSG00000036550Cnot110099.285ENSLAFG00000000098CNOT110099.285Loxodonta_africana
ENSMUSG00000036550Cnot110099.441ENSMFAG00000035888CNOT110099.441Macaca_fascicularis
ENSMUSG00000036550Cnot110099.411ENSMMUG00000014625CNOT110099.411Macaca_mulatta
ENSMUSG00000036550Cnot110096.862ENSMNEG00000031820CNOT110099.486Macaca_nemestrina
ENSMUSG00000036550Cnot110098.237ENSMLEG00000040933CNOT110098.237Mandrillus_leucophaeus
ENSMUSG00000036550Cnot110089.445ENSMAMG00000016524cnot110089.440Mastacembelus_armatus
ENSMUSG00000036550Cnot19796.914ENSMZEG00005016210cnot110096.914Maylandia_zebra
ENSMUSG00000036550Cnot110097.427ENSMGAG00000001908CNOT110097.427Meleagris_gallopavo
ENSMUSG00000036550Cnot110099.327ENSMICG00000007071CNOT110099.327Microcebus_murinus
ENSMUSG00000036550Cnot110099.874ENSMOCG00000017969Cnot110099.874Microtus_ochrogaster
ENSMUSG00000036550Cnot19793.548ENSMMOG00000019134cnot110093.548Mola_mola
ENSMUSG00000036550Cnot110097.644ENSMODG00000014199CNOT110097.644Monodelphis_domestica
ENSMUSG00000036550Cnot110090.152ENSMALG00000008645cnot110090.194Monopterus_albus
ENSMUSG00000036550Cnot195100.000MGP_CAROLIEiJ_G0031430Cnot192100.000Mus_caroli
ENSMUSG00000036550Cnot110099.958MGP_PahariEiJ_G0023028Cnot110099.958Mus_pahari
ENSMUSG00000036550Cnot1100100.000MGP_SPRETEiJ_G0032549Cnot1100100.000Mus_spretus
ENSMUSG00000036550Cnot110099.537ENSMPUG00000004830CNOT110099.537Mustela_putorius_furo
ENSMUSG00000036550Cnot110098.948ENSMLUG00000003728CNOT110098.948Myotis_lucifugus
ENSMUSG00000036550Cnot110099.621ENSNGAG00000018628Cnot110099.621Nannospalax_galili
ENSMUSG00000036550Cnot19496.914ENSNBRG00000019358cnot110096.914Neolamprologus_brichardi
ENSMUSG00000036550Cnot110099.355ENSNLEG00000003566CNOT110099.355Nomascus_leucogenys
ENSMUSG00000036550Cnot18697.763ENSMEUG00000006145CNOT18797.763Notamacropus_eugenii
ENSMUSG00000036550Cnot186100.000ENSOPRG00000005604CNOT186100.000Ochotona_princeps
ENSMUSG00000036550Cnot110099.453ENSODEG00000016337CNOT110099.453Octodon_degus
ENSMUSG00000036550Cnot110090.558ENSONIG00000007358cnot110090.151Oreochromis_niloticus
ENSMUSG00000036550Cnot19298.043ENSOANG00000012109CNOT110098.119Ornithorhynchus_anatinus
ENSMUSG00000036550Cnot110099.453ENSOCUG00000006911CNOT110099.453Oryctolagus_cuniculus
ENSMUSG00000036550Cnot110090.588ENSORLG00000013734cnot110090.542Oryzias_latipes
ENSMUSG00000036550Cnot110090.734ENSORLG00020017012cnot110090.488Oryzias_latipes_hni
ENSMUSG00000036550Cnot110090.562ENSORLG00015007091cnot110090.060Oryzias_latipes_hsok
ENSMUSG00000036550Cnot110089.884ENSOMEG00000015124cnot110090.137Oryzias_melastigma
ENSMUSG00000036550Cnot110099.369ENSOGAG00000000543CNOT110099.369Otolemur_garnettii
ENSMUSG00000036550Cnot110099.537ENSOARG00000001567CNOT110099.537Ovis_aries
ENSMUSG00000036550Cnot110099.411ENSPPAG00000022013CNOT110099.411Pan_paniscus
ENSMUSG00000036550Cnot110099.537ENSPPRG00000004867CNOT110099.537Panthera_pardus
ENSMUSG00000036550Cnot110099.537ENSPTIG00000012589CNOT110099.537Panthera_tigris_altaica
ENSMUSG00000036550Cnot110099.398ENSPTRG00000008183CNOT110099.398Pan_troglodytes
ENSMUSG00000036550Cnot110095.977ENSPANG00000020901CNOT110095.977Papio_anubis
ENSMUSG00000036550Cnot110092.178ENSPKIG00000023538CNOT110092.347Paramormyrops_kingsleyae
ENSMUSG00000036550Cnot19793.118ENSPKIG00000002914CNOT19993.118Paramormyrops_kingsleyae
ENSMUSG00000036550Cnot110097.433ENSPSIG00000005499CNOT110097.433Pelodiscus_sinensis
ENSMUSG00000036550Cnot110081.379ENSPMAG00000009381cnot110081.279Petromyzon_marinus
ENSMUSG00000036550Cnot110097.552ENSPCIG00000007343CNOT110098.472Phascolarctos_cinereus
ENSMUSG00000036550Cnot19989.788ENSPFOG00000003497cnot110089.831Poecilia_formosa
ENSMUSG00000036550Cnot19596.008ENSPLAG00000014018cnot110096.008Poecilia_latipinna
ENSMUSG00000036550Cnot19596.008ENSPMEG00000005868cnot110096.008Poecilia_mexicana
ENSMUSG00000036550Cnot19596.008ENSPREG00000018793cnot110096.008Poecilia_reticulata
ENSMUSG00000036550Cnot110099.369ENSPPYG00000007410CNOT110099.369Pongo_abelii
ENSMUSG00000036550Cnot19097.189ENSPCAG00000003241CNOT19097.189Procavia_capensis
ENSMUSG00000036550Cnot110099.355ENSPCOG00000027139CNOT110099.355Propithecus_coquereli
ENSMUSG00000036550Cnot110096.970ENSPVAG00000004243CNOT110096.970Pteropus_vampyrus
ENSMUSG00000036550Cnot19796.914ENSPNYG00000012919cnot110096.914Pundamilia_nyererei
ENSMUSG00000036550Cnot110089.798ENSPNAG00000000246cnot110090.219Pygocentrus_nattereri
ENSMUSG00000036550Cnot110099.916ENSRNOG00000012271Cnot110099.916Rattus_norvegicus
ENSMUSG00000036550Cnot110097.334ENSRBIG00000044598CNOT110097.334Rhinopithecus_bieti
ENSMUSG00000036550Cnot110099.453ENSRROG00000000906CNOT110099.453Rhinopithecus_roxellana
ENSMUSG00000036550Cnot15731.373YCR093WCDC396834.074Saccharomyces_cerevisiae
ENSMUSG00000036550Cnot110095.154ENSSBOG00000029155CNOT110095.154Saimiri_boliviensis_boliviensis
ENSMUSG00000036550Cnot110097.813ENSSHAG00000012187CNOT110097.813Sarcophilus_harrisii
ENSMUSG00000036550Cnot110092.377ENSSFOG00015017614cnot110092.117Scleropages_formosus
ENSMUSG00000036550Cnot19796.914ENSSMAG00000013844cnot110096.914Scophthalmus_maximus
ENSMUSG00000036550Cnot19796.774ENSSDUG00000021491cnot110096.774Seriola_dumerili
ENSMUSG00000036550Cnot19796.774ENSSLDG00000014816cnot110096.774Seriola_lalandi_dorsalis
ENSMUSG00000036550Cnot185100.000ENSSARG00000000762CNOT188100.000Sorex_araneus
ENSMUSG00000036550Cnot110090.538ENSSPAG00000018802cnot110090.328Stegastes_partitus
ENSMUSG00000036550Cnot110099.411ENSSSCG00000002799CNOT110099.411Sus_scrofa
ENSMUSG00000036550Cnot110097.352ENSTGUG00000005919CNOT110097.352Taeniopygia_guttata
ENSMUSG00000036550Cnot110089.089ENSTNIG00000018706cnot110088.852Tetraodon_nigroviridis
ENSMUSG00000036550Cnot180100.000ENSTBEG00000000720CNOT180100.000Tupaia_belangeri
ENSMUSG00000036550Cnot19599.359ENSTTRG00000008460CNOT19599.359Tursiops_truncatus
ENSMUSG00000036550Cnot110099.537ENSUAMG00000009251CNOT110099.537Ursus_americanus
ENSMUSG00000036550Cnot110099.537ENSUMAG00000021291CNOT110099.537Ursus_maritimus
ENSMUSG00000036550Cnot19796.882ENSVPAG00000008846CNOT19796.882Vicugna_pacos
ENSMUSG00000036550Cnot110098.407ENSVVUG00000024037CNOT110099.031Vulpes_vulpes
ENSMUSG00000036550Cnot110090.198ENSXETG00000015900cnot110089.987Xenopus_tropicalis
ENSMUSG00000036550Cnot110089.314ENSXCOG00000013552cnot110089.272Xiphophorus_couchianus
ENSMUSG00000036550Cnot110089.356ENSXMAG00000006031cnot110089.314Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000122negative regulation of transcription by RNA polymerase II-ISOProcess
GO:0000932P-body21873635.IBAComponent
GO:0000932P-body20133598.IDAComponent
GO:0000932P-body-ISOComponent
GO:0001829trophectodermal cell differentiation22367759.IMPProcess
GO:0004535poly(A)-specific ribonuclease activity-ISOFunction
GO:0005515protein binding17452450.20133598.IPIFunction
GO:0005634nucleus-IEAComponent
GO:0005737cytoplasm-IEAComponent
GO:0005829cytosol-ISOComponent
GO:0006417regulation of translation-IEAProcess
GO:0007275multicellular organism development-IEAProcess
GO:0010606positive regulation of cytoplasmic mRNA processing body assembly-ISOProcess
GO:0017148negative regulation of translation21873635.IBAProcess
GO:0017148negative regulation of translation-ISOProcess
GO:0019904protein domain specific binding-ISOFunction
GO:0030014CCR4-NOT complex-ISOComponent
GO:0030015CCR4-NOT core complex-IEAComponent
GO:0030331estrogen receptor binding-ISOFunction
GO:0031047gene silencing by RNA-IEAProcess
GO:0033147negative regulation of intracellular estrogen receptor signaling pathway-ISOProcess
GO:0035195gene silencing by miRNA-ISOProcess
GO:0042974retinoic acid receptor binding-ISOFunction
GO:0048387negative regulation of retinoic acid receptor signaling pathway-ISOProcess
GO:0060090molecular adaptor activity21873635.IBAFunction
GO:0060090molecular adaptor activity-ISOFunction
GO:0060213positive regulation of nuclear-transcribed mRNA poly(A) tail shortening-ISOProcess
GO:0061014positive regulation of mRNA catabolic process-ISOProcess
GO:0070016armadillo repeat domain binding-ISOFunction
GO:1900153positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay-ISOProcess
GO:2000036regulation of stem cell population maintenance21873635.IBAProcess
GO:2000036regulation of stem cell population maintenance22367759.IMPProcess
GO:2000036regulation of stem cell population maintenance-ISOProcess

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